NO02G03020.1, NO02G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G03020.1
Unique NameNO02G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1882
Alignment locationchr2:810618..812621 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:810618..812621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO02G03020.1 vs.
Match: EWM30377.1 (cell division protein kinase 9 [Nannochloropsis gaditana])

HSP 1 Score: 482.3 bits (1240), Expect = 1.900e-132
Identity = 296/517 (57.25%), Postives = 349/517 (67.50%), Query Frame = 0 
Query:   20 PASSIKPKVK-PPPPPPPLRLPNPPPPP----PTKR----PIAEGGRGNEPPVKKVSLPPPPPPRPAAPPPARLGPQQQQQANKPPSAATNRPGIPTHVTPPPVIPMAVPRAPTLV-GATDMASKYEMLEQIGSGTYGYVFRARVRGTDKVVALKRIKMDDPRPEAHRDGFPITALREIKLLSCMSHENVVRLEEIATSNSSSSASSSSSSQGEENDFGLVSHVPSSIYMVFEYCEADLLDVLKAVRNHTLYLTQDHFHSFTRQLLEGMFYIHKNRILHRDIKAANILVTRDCRLKIGDWGLARTCHPPPYPAPMVAEDRGG------VRSA--SEREKTSRYTDNVVTLWYRAPELLMGVTSYTTAIDMWSIGCLIAELFLLRTLLQGRDELEQLNLIFNLCGTPSPDTWPALGQGQAQAPPPPPSRPPPS-----RPLHPSYRPRIVKQKLSCTPGGKEGADLVDKLLALNPNSRWSAEQALDHDYLWMEDPKEPGELPPIIHLRRAQANAGGKG 514
            P  S+ P  + PPPPP P     PPPPP    P KR    P     +       +  +PPPPPPR  A         Q +      S +   PG     T  P I      AP +V GAT+MASKYE+LEQIGSGTYGYVFR RVRG+D VVALK+IK+DDPRPE  RDGFPITALREIK+LSCMSH N+VRLEEI TS+ ++S +  S S            VPSSIYMVFEYCE DLLDVLKAVR     LT+DH  SFTRQLLEGM YIH NR++HRDIKAANILVTR+CRLKI DWGLAR+  P   PA   A++  G      V SA  SE+EK SRYTDNVVTLWYRAPELLMGV+SYTTAID+WSIGCL+AELFLLRTL QGRDELEQ++LIF  CGTP+P +W        +AP   P+    +     RP  P+ RPR +K++L+ T GG +GADLVDKLLAL+P+ R +A QALDH++LW ++PK+P ELPP++ LRR    AGGKG
Sbjct:    5 PQVSVPPSRRPPPPPPIPRPKTKPPPPPLPDRPRKRRIECPSMNVAKDQGIETSREKVPPPPPPRNIA--------SQTRPVFDKTSGSGTVPGQQVSATSSPQIAQEQTVAPAVVIGATNMASKYEILEQIGSGTYGYVFRGRVRGSDNVVALKKIKLDDPRPEPQRDGFPITALREIKILSCMSHPNIVRLEEIVTSSDTNSQNGESRS------------VPSSIYMVFEYCEGDLLDVLKAVREGRFQLTRDHVCSFTRQLLEGMLYIHSNRVVHRDIKAANILVTRNCRLKIADWGLARSWRPLTEPAEATADEDVGANVHHAVASARKSEKEKGSRYTDNVVTLWYRAPELLMGVSSYTTAIDIWSIGCLVAELFLLRTLFQGRDELEQMHLIFRSCGTPAPKSW-------MRAPTSRPATQTTALSSSHRPPLPA-RPRRLKEELAGTSGGPDGADLVDKLLALDPSCRLTAIQALDHEFLWQDEPKDPEELPPLVPLRRMVPTAGGKG 493
The following BLAST results are available for this feature:
BLAST of NO02G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30377.11.900e-13257.25cell division protein kinase 9 [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03020NO02G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G03020.1NO02G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G03020.1.cds1NO02G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G03020.1.cds2NO02G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G03020.1 ID=NO02G03020.1|Name=NO02G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
AGGGGAGGGGTCGGCGAGGGGAGGGAAGAAATGAATGGTGACTGTGATAT
GAGCATAGCAATGGAGATTGAGCTAGAATAGGACCAGAATGACGACGGGC
AGCTTTTGTGTGCTGCTGTGGCAACCCCAACGGTGCATCGAGTCGCATAA
ACACCGTACAAGTGCCCGTGTGCCTCCTTAGCAGTGGAGCGAACGTTTGG
GCGGCGTTCTCGCACGTCGGCGTTTGATGATGGCTTCGTTCGACGCACCC
CTCGATTTCCTCCTCGCCGTGTCGCCCGGTCATAGACACAGACCTCACTA
CATCCCACTCGACCACAGATGCCTCCTCCTTCCCCTCTTCCTCCTCCTCC
CCCACCGCCACTGCCTCATGCAGCACCAGCTTCATCGATCAAGCCCAAGG
TGAAGCCCCCTCCCCCTCCCCCCCCCTTGCGTCTTCCTAATCCTCCTCCT
CCTCCTCCCACGAAGAGACCGATTGCTGAAGGAGGACGCGGCAACGAGCC
ACCTGTGAAAAAAGTGTCACTACCACCGCCGCCTCCTCCACGACCGGCAG
CGCCACCACCAGCTCGGCTCGGACCGCAGCAGCAACAGCAGGCCAACAAA
CCGCCCTCGGCAGCCACAAATCGACCAGGCATCCCCACGCATGTCACCCC
ACCCCCCGTTATACCAATGGCGGTGCCCAGAGCGCCAACTTTGGTGGGGG
CCACGGACATGGCGTCTAAGTACGAAATGTTGGAGCAAATTGGGAGTGGC
ACCTACGGCTACGTGTTTCGAGCCCGCGTGCGGGGCACGGACAAGGTGGT
TGCCCTGAAGAGGATCAAGATGGACGACCCCCGGCCTGAGGCACATCGGG
ATGGGTTCCCAATCACAGCCCTCCGTGAAATCAAGCTCCTCAGCTGTATG
TCTCACGAGAACGTGGTCCGCCTCGAGGAAATTGCTACCTCCAACAGCAG
TAGTAGCGCCTCCTCTTCTTCCTCATCCCAGGGAGAAGAGAACGACTTCG
GGCTCGTCTCGCACGTTCCCTCTTCTATCTACATGGTCTTTGAGTACTGC
GAAGCTGATCTCTTGGACGTGCTCAAAGCCGTGCGCAACCACACCCTTTA
CCTCACCCAGGACCACTTCCATTCCTTCACCCGCCAGCTCCTCGAAGGCA
TGTTCTATATCCACAAGAATCGTATTCTGCATCGTGATATCAAGGCTGCC
AACATCCTCGTCACTCGTGACTGTCGTCTGAAAATAGGCGATTGGGGCCT
CGCTCGCACTTGTCATCCGCCCCCTTATCCCGCGCCGATGGTGGCGGAGG
ATCGCGGGGGTGTGCGATCGGCGAGTGAGAGGGAGAAGACGAGTAGGTAT
ACCGACAACGTGGTGACGCTTTGGTATCGTGCTCCTGAGTTGTTGATGGG
GGTGACCAGCTACACCACCGCCATTGATATGTGGTCTATCGGCTGTTTGA
TCGCAGAGTTGTTTTTGCTGCGCACGTTGCTGCAAGGCCGCGACGAATTA
GAGCAGCTGAACTTGATTTTTAATCTGTGTGGGACTCCGAGCCCGGACAC
ATGGCCTGCTCTCGGGCAAGGACAAGCGCAAGCCCCCCCTCCTCCTCCCT
CTCGTCCTCCTCCCTCCCGCCCTCTCCACCCGTCTTATCGTCCGCGGATC
GTGAAGCAAAAATTGAGCTGTACGCCAGGGGGAAAAGAAGGGGCCGATCT
GGTTGACAAGCTGTTGGCGCTTAATCCCAACAGTCGGTGGAGTGCAGAGC
AGGCATTAGATCACGATTATTTGTGGATGGAAGACCCAAAAGAGCCAGGA
GAATTGCCGCCGATCATACATTTGAGAAGAGCTCAGGCGAATGCGGGGGG
GAAGGGGTGAGAGAGGAAAGGAAAGAAGAGAC
back to top

protein sequence of NO02G03020.1

>NO02G03020.1-protein ID=NO02G03020.1-protein|Name=NO02G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MPPPSPLPPPPPPPLPHAAPASSIKPKVKPPPPPPPLRLPNPPPPPPTKR
PIAEGGRGNEPPVKKVSLPPPPPPRPAAPPPARLGPQQQQQANKPPSAAT
NRPGIPTHVTPPPVIPMAVPRAPTLVGATDMASKYEMLEQIGSGTYGYVF
RARVRGTDKVVALKRIKMDDPRPEAHRDGFPITALREIKLLSCMSHENVV
RLEEIATSNSSSSASSSSSSQGEENDFGLVSHVPSSIYMVFEYCEADLLD
VLKAVRNHTLYLTQDHFHSFTRQLLEGMFYIHKNRILHRDIKAANILVTR
DCRLKIGDWGLARTCHPPPYPAPMVAEDRGGVRSASEREKTSRYTDNVVT
LWYRAPELLMGVTSYTTAIDMWSIGCLIAELFLLRTLLQGRDELEQLNLI
FNLCGTPSPDTWPALGQGQAQAPPPPPSRPPPSRPLHPSYRPRIVKQKLS
CTPGGKEGADLVDKLLALNPNSRWSAEQALDHDYLWMEDPKEPGELPPII
HLRRAQANAGGKG*
back to top

mRNA from alignment at chr2:810618..812621-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G03020.1 ID=NO02G03020.1|Name=NO02G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp|location=Sequence derived from alignment at chr2:810618..812621- (Nannochloropsis oceanica)
AGGGGAGGGGTCGGCGAGGGGAGGGAAGAAATGAATGGTGACTGTGATAT
GAGCATAGCAATGGAGATTGAGCTAGAATAGGACCAGAATGACGACGGGC
AGCTTTTGTGTGCTGCTGTGGCAACCCCAACGGTGCATCGAGTCGCATAA
ACACCGTACAAGTGCCCGTGTGCCTCCTTAGCAGTGGAGCGAACGTTTGG
GCGGCGTTCTCGCACGTCGGCGTTTGATGATGGCTTCGTTCGACGCACCC
CTCGATTTCCTCCTCGCCGTGTCGCCCGGTCATAGACACAGACCTCACTA
CATCCCACTCGACCACAGATGCCTCCTCCTTCCCCTCTTCCTCCTCCTCC
CCCACCGCCACTGCCTCATGCAGCACCAGCTTCATCGATCAAGCCCAAGG
TGAAGCCCCCTCCCCCTCCCCCCCCCTTGCGTCTTCCTAATCCTCCTCCT
CCTCCTCCCACGAAGAGACCGATTGCTGAAGGAGGACGCGGCAACGAGCC
ACCTGTGAAAAAAGTGTCACTACCACCGCCGCCTCCTCCACGACCGGCAG
CGCCACCACCAGCTCGGCTCGGACCGCAGCAGCAACAGCAGGCCAACAAA
CCGCCCTCGGCAGCCACAAATCGACCAGGCATCCCCACGCATGTCACCCC
ACCCCCCGTTATACCAATGGCGGTGCCCAGAGCGCCAACTTTGGTGGGGG
CCACGGACATGGCGTCTAAGTACGAAATGTTGGAGCAAATTGGGAGTGGC
ACCTACGGCTACGTGTTTCGAGCCCGCGTGCGGGGCACGGACAAGGTGGT
TGCCCTGAAGAGGATCAAGATGGACGACCCCCGGCCTGAGGCACATCGGG
ATGGGGTAGGTTTGTGTGTATGGAATGCTTCTGATCGTTTCCCTAATCTC
GTCTCTCTCCTCTTCGCTTGCTCCAAAATAAGCTTACTCCGCTCATTCTT
CCCTTTCCCCCCACTCTTTTAATTGAGTTCCCAATCACAGCCCTCCGTGA
AATCAAGCTCCTCAGCTGTATGTCTCACGAGAACGTGGTCCGCCTCGAGG
AAATTGCTACCTCCAACAGCAGTAGTAGCGCCTCCTCTTCTTCCTCATCC
CAGGGAGAAGAGAACGACTTCGGGCTCGTCTCGCACGTTCCCTCTTCTAT
CTACATGGTCTTTGAGTACTGCGAAGCTGATCTCTTGGACGTGCTCAAAG
CCGTGCGCAACCACACCCTTTACCTCACCCAGGACCACTTCCATTCCTTC
ACCCGCCAGCTCCTCGAAGGCATGTTCTATATCCACAAGAATCGTATTCT
GCATCGTGATATCAAGGCTGCCAACATCCTCGTCACTCGTGACTGTCGTC
TGAAAATAGGCGATTGGGGCCTCGCTCGCACTTGTCATCCGCCCCCTTAT
CCCGCGCCGATGGTGGCGGAGGATCGCGGGGGTGTGCGATCGGCGAGTGA
GAGGGAGAAGACGAGTAGGTATACCGACAACGTGGTGACGCTTTGGTATC
GTGCTCCTGAGTTGTTGATGGGGGTGACCAGCTACACCACCGCCATTGAT
ATGTGGTCTATCGGCTGTTTGATCGCAGAGTTGTTTTTGCTGCGCACGTT
GCTGCAAGGCCGCGACGAATTAGAGCAGCTGAACTTGATTTTTAATCTGT
GTGGGACTCCGAGCCCGGACACATGGCCTGCTCTCGGGCAAGGACAAGCG
CAAGCCCCCCCTCCTCCTCCCTCTCGTCCTCCTCCCTCCCGCCCTCTCCA
CCCGTCTTATCGTCCGCGGATCGTGAAGCAAAAATTGAGCTGTACGCCAG
GGGGAAAAGAAGGGGCCGATCTGGTTGACAAGCTGTTGGCGCTTAATCCC
AACAGTCGGTGGAGTGCAGAGCAGGCATTAGATCACGATTATTTGTGGAT
GGAAGACCCAAAAGAGCCAGGAGAATTGCCGCCGATCATACATTTGAGAA
GAGCTCAGGCGAATGCGGGGGGGAAGGGGTGAGAGAGGAAAGGAAAGAAG
AGAC
back to top

Coding sequence (CDS) from alignment at chr2:810618..812621-

>NO02G03020.1 ID=NO02G03020.1|Name=NO02G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr2:810618..812621- (Nannochloropsis oceanica)
ATGCCTCCTCCTTCCCCTCTTCCTCCTCCTCCCCCACCGCCACTGCCTCA
TGCAGCACCAGCTTCATCGATCAAGCCCAAGGTGAAGCCCCCTCCCCCTC
CCCCCCCCTTGCGTCTTCCTAATCCTCCTCCTCCTCCTCCCACGAAGAGA
CCGATTGCTGAAGGAGGACGCGGCAACGAGCCACCTGTGAAAAAAGTGTC
ACTACCACCGCCGCCTCCTCCACGACCGGCAGCGCCACCACCAGCTCGGC
TCGGACCGCAGCAGCAACAGCAGGCCAACAAACCGCCCTCGGCAGCCACA
AATCGACCAGGCATCCCCACGCATGTCACCCCACCCCCCGTTATACCAAT
GGCGGTGCCCAGAGCGCCAACTTTGGTGGGGGCCACGGACATGGCGTCTA
AGTACGAAATGTTGGAGCAAATTGGGAGTGGCACCTACGGCTACGTGTTT
CGAGCCCGCGTGCGGGGCACGGACAAGGTGGTTGCCCTGAAGAGGATCAA
GATGGACGACCCCCGGCCTGAGGCACATCGGGATGGGTTCCCAATCACAG
CCCTCCGTGAAATCAAGCTCCTCAGCTGTATGTCTCACGAGAACGTGGTC
CGCCTCGAGGAAATTGCTACCTCCAACAGCAGTAGTAGCGCCTCCTCTTC
TTCCTCATCCCAGGGAGAAGAGAACGACTTCGGGCTCGTCTCGCACGTTC
CCTCTTCTATCTACATGGTCTTTGAGTACTGCGAAGCTGATCTCTTGGAC
GTGCTCAAAGCCGTGCGCAACCACACCCTTTACCTCACCCAGGACCACTT
CCATTCCTTCACCCGCCAGCTCCTCGAAGGCATGTTCTATATCCACAAGA
ATCGTATTCTGCATCGTGATATCAAGGCTGCCAACATCCTCGTCACTCGT
GACTGTCGTCTGAAAATAGGCGATTGGGGCCTCGCTCGCACTTGTCATCC
GCCCCCTTATCCCGCGCCGATGGTGGCGGAGGATCGCGGGGGTGTGCGAT
CGGCGAGTGAGAGGGAGAAGACGAGTAGGTATACCGACAACGTGGTGACG
CTTTGGTATCGTGCTCCTGAGTTGTTGATGGGGGTGACCAGCTACACCAC
CGCCATTGATATGTGGTCTATCGGCTGTTTGATCGCAGAGTTGTTTTTGC
TGCGCACGTTGCTGCAAGGCCGCGACGAATTAGAGCAGCTGAACTTGATT
TTTAATCTGTGTGGGACTCCGAGCCCGGACACATGGCCTGCTCTCGGGCA
AGGACAAGCGCAAGCCCCCCCTCCTCCTCCCTCTCGTCCTCCTCCCTCCC
GCCCTCTCCACCCGTCTTATCGTCCGCGGATCGTGAAGCAAAAATTGAGC
TGTACGCCAGGGGGAAAAGAAGGGGCCGATCTGGTTGACAAGCTGTTGGC
GCTTAATCCCAACAGTCGGTGGAGTGCAGAGCAGGCATTAGATCACGATT
ATTTGTGGATGGAAGACCCAAAAGAGCCAGGAGAATTGCCGCCGATCATA
CATTTGAGAAGAGCTCAGGCGAATGCGGGGGGGAAGGGGTGA
back to top
Synonyms
Publications