NO02G02370.3, NO02G02370.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G02370.3
Unique Name	NO02G02370.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3176
Alignment location	chr2:657869..661136 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:657869..661136 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G02370.3 vs.
Match: EWM30429.1 (ca2 :cation antiporter family [Nannochloropsis gaditana])

HSP 1 Score: 164.5 bits (415), Expect = 6.600e-37
Identity = 118/275 (42.91%), Postives = 154/275 (56.00%), Query Frame = 0

Query:   50 MQRPSVKKGQHKKPPPSSSPPSHAAATSS--LFSFHVLA--LLSVYAFAAFFFFYFWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQRAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQLELTGKHEFNGTWLDNVRHKS-GRVRIVPRVIWEVPAFVNPEQVAEVVGLLVDEAKERNYDGCVPGRNNFEEGPYFQIS-SHREINLYFHDFLSLPVFLCTVFPFFLLPSLNPFLPP 319
            MQR  VKK   ++  P SS PS   A S+   + F ++A  ++S+           W+   T   A++ET + TL HL+ CA      E           +   QR QEVLAY TPWNRQGF VAETYAHKLT+L+PVWYQLR    Q ++  +  + LELTG HEFN TWL NVR+KS  RVRIVPRVIWEVPAFV P QV  +  LL +EA++R +DG        E G + +++ S +         LS P  +  + P F +P+  P  PP
Sbjct:    1 MQRAKVKKKPTQQTVPLSSCPSETKAISNTKFWHFAIIAALMISLIVTTVTIVPLNWRQFGTRHNAIFETNDFTLAHLQNCAQSDAVLE-----------QPPEQRPQEVLAYTTPWNRQGFAVAETYAHKLTFLSPVWYQLRA--PQLQRNDYDGRGLELTGGHEFNNTWLRNVRNKSKNRVRIVPRVIWEVPAFVLPTQVPIITQLLAEEARDRGFDGYTLEFPVDEHGIFAELTRSLKNALSEAIPLLSSPTLIVAI-PAFQMPT-RPQTPP 260

The following BLAST results are available for this feature:

BLAST of NO02G02370.3 vs.

BLAST of NO02G02370.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30429.1	6.600e-37	42.91	ca2 :cation antiporter family [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G02370	NO02G02370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02370.3	NO02G02370.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G02370.3.cds1	NO02G02370.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G02370.3.cds2	NO02G02370.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:657869..661136-
coding sequence from alignment at chr2:657869..661136-

mRNA sequence

>NO02G02370.3 ID=NO02G02370.3|Name=NO02G02370.3|organism=Nannochloropsis oceanica|type=mRNA|length=3176bp
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA
CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC
GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG
CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA
TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC
TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG
CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA
CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG
TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT
GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA
TGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGA
TTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGTCACTG
CCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAA
TCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCC
AATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTT
CCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCC
ATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCA
CGTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTT
CCCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGC
CCCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAA
GGAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGT
TGGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACAC
GAGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGA
GTGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAG
GGAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCG
GCGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGG
GATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCT
GGTAGGGGGAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGCTAGAAG
GAGTGTAAGCTAATGATGTAAATGCTTGTGACTTAAAAAAAATCTCTGGG
ACTGCTTCGTGATGAAACAAACACACGCGTGCCCAGGTATCGCTTCGCTG
AACAGGAAAAATGACAAAGTAGGGATAGAACTTGTAAAAAATGACAAAGT
AGGGATAGAACTTGTATTCAATGACA

protein sequence of NO02G02370.3

>NO02G02370.3-protein ID=NO02G02370.3-protein|Name=NO02G02370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MIRQFGVIRVERCITTPLYSCTCSKPTPNVVDSRIQASPSRDSISDSPAM
QRPSVKKGQHKKPPPSSSPPSHAAATSSLFSFHVLALLSVYAFAAFFFFY
FWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQ
RAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQ
RQQLELTGKHEFNGTWLDNVRHKSGRVRIVPRVIWEVPAFVNPEQVAEVV
GLLVDEAKERNYDGCVPGRNNFEEGPYFQISSHREINLYFHDFLSLPVFL
CTVFPFFLLPSLNPFLPPPPLCSGIHSNSQSTPAGFSRISPAASRLPSLR
LFLPPCLPFLSWPFLHFKCLPVRRPRGRCT*

mRNA from alignment at chr2:657869..661136-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G02370.3 ID=NO02G02370.3|Name=NO02G02370.3|organism=Nannochloropsis oceanica|type=mRNA|length=3268bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA
CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC
GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG
CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA
TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC
TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG
CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA
CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG
TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT
GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA
TGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGA
TTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGTCACTG
CCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAA
TCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCC
AATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTT
CCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCC
ATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCA
CGTACGTCGTCCTCGTAGCCACCTTCCTTCCCCCCTCCCTCCCTTCCTGA
ATTCACGACAAAGACTTAATTTCTTCCTTTTTAAAAATAACAGGTGACCC
CCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCCTCATG
ACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGG
ATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGG
GGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGGGGCTA
CCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAGTTTGA
GAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGG
AGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGAGGGAT
GGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCGTTCTT
CTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGATAGCTG
TGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGTAGGGG
GAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGCTAGAAGGAGTGTAA
GCTAATGATGTAAATGCTTGTGACTTAAAAAAAATCTCTGGGACTGCTTC
GTGATGAAACAAACACACGCGTGCCCAGGTATCGCTTCGCTGAACAGGAA
AAATGACAAAGTAGGGATAGAACTTGTAAAAAATGACAAAGTAGGGATAG
AACTTGTATTCAATGACA

Coding sequence (CDS) from alignment at chr2:657869..661136-

>NO02G02370.3 ID=NO02G02370.3|Name=NO02G02370.3|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
ATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTGTATTACGACCCC
TCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACGTTGTCGACAGCA
GGATACAGGCATCGCCATCCCGTGATAGCATCAGCGACAGCCCGGCCATG
CAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCCACCACCATCGTC
TTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCTTCAGCTTTCATG
TCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTTTTCTTCTTCTAT
TTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTACGAGACGCAGAA
CCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCCGCACGGCACCTG
AAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAG
CGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTT
TGTAGTAGCGGAGACATATGCTCACAAACTGACTTATCTTGCCCCCGTCT
GGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAG
CGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCT
CGACAATGTACGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGA
TTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTG
GGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGATGGGTGCGTACC
AGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGATTTCCAGCCATA
GAGAAATCAATCTATATTTCCACGATTTCTTGTCACTGCCGGTCTTTCTC
TGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAATCCCTTCCTCCC
TCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCCAATCGACGCCCG
CGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGG
CTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCCATTCCTGCATTT
CAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCACGTGA

Synonyms

Publications