NO02G02370.2, NO02G02370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02370.2
Unique NameNO02G02370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2932
Alignment locationchr2:657869..661136 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:657869..661136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02370.2 vs.
Match: EWM30429.1 (ca2 :cation antiporter family [Nannochloropsis gaditana])

HSP 1 Score: 418.3 bits (1074), Expect = 2.600e-113
Identity = 214/340 (62.94%), Postives = 254/340 (74.71%), Query Frame = 0 
Query:   46 QRAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQLELTGKHEFNGTWLDNVRHKS-GRVRIVPRVIWEVPAFVNPEQVAEVVGLLVDEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPILIVAIPAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGAPNSPLGWMEETIESFVQGRKEGGADKG-ADLVKIKMLLGLPWYGYVGGQAIVGHEFERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTFPTPAFFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW 384
            QR QEVLAY TPWNRQGF VAETYAHKLT+L+PVWYQLR    Q ++  +  + LELTG HEFN TWL NVR+KS  RVRIVPRVIWEVPAFV P QV  +  LL +EA++R +DGYTLEFP+D  G+FA LT SLK +LS+AIP    P LIVAIPAFQMPTRP TP E HVTP +LL+L+PHV RFSLMTYDY + PSGAP SPL W+  T+E  +   +EG   K  A +++ KMLLGLPWYGY GGQAI GHEF++ VL+R E VRR  W E++QE +F      G +    +E+  T+PTPAFF RRFAL  E+G+AG+AVWE GQGL CFPMLW
Sbjct:   94 QRPQEVLAYTTPWNRQGFAVAETYAHKLTFLSPVWYQLRAP--QLQRNDYDGRGLELTGGHEFNNTWLRNVRNKSKNRVRIVPRVIWEVPAFVLPTQVPIITQLLAEEARDRGFDGYTLEFPVDEHGIFAELTRSLKNALSEAIPLLSSPTLIVAIPAFQMPTRPQTPPEYHVTPRLLLTLAPHVSRFSLMTYDYAQTPSGAPISPLPWVMRTVE--MLSNREGEQGKADARILRGKMLLGLPWYGYAGGQAITGHEFQKNVLDRAEHVRRVWWDEDTQEHVFVYSASHGEEA--GEEVRATYPTPAFFKRRFALSRELGLAGVAVWEAGQGLVCFPMLW 427
The following BLAST results are available for this feature:
BLAST of NO02G02370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30429.12.600e-11362.94ca2 :cation antiporter family [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02370NO02G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02370.2NO02G02370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02370.2.cds1NO02G02370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02370.2.cds2NO02G02370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02370.2.cds3NO02G02370.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02370.2.cds4NO02G02370.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02370.2 ID=NO02G02370.2|Name=NO02G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=2932bp
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGTGTGCCTCGATCCGCACGGCACCTGAAG
ACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAGCGG
GCACAAGAGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTTTGT
AGTAGCGGAGACATATGCTCACAAACTGACTTATCTTGCCCCCGTCTGGT
ATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAGCGA
CAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCTCGA
CAATGTACGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGATTT
GGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTGGGG
CTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGATGGGTATACACTCGA
ATTCCCAATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCA
AGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATC
GTGGCCATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGA
GATGCACGTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACC
GTTTTTCCCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCA
AACAGCCCCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGG
GAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGA
TGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTG
GGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCG
TTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGG
AGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCG
ACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTAT
GGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGA
TGCTCTGGTAGGGGGAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGC
TAGAAGGAGTGTAAGCTAATGATGTAAATGCTTGTGACTTAAAAAAAATC
TCTGGGACTGCTTCGTGATGAAACAAACACACGCGTGCCCAGGTATCGCT
TCGCTGAACAGGAAAAATGACAAAGTAGGGATAGAACTTGTAAAAAATGA
CAAAGTAGGGATAGAACTTGTATTCAATGACA
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protein sequence of NO02G02370.2

>NO02G02370.2-protein ID=NO02G02370.2-protein|Name=NO02G02370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MSWPFSLFTLLPLFSSSISGRCASIRTAPEDTHFAASMSWSEQSNQRAQE
VLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQL
ELTGKHEFNGTWLDNVRHKSGRVRIVPRVIWEVPAFVNPEQVAEVVGLLV
DEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPILIVAI
PAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGAPNSP
LGWMEETIESFVQGRKEGGADKGADLVKIKMLLGLPWYGYVGGQAIVGHE
FERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTFPTPA
FFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW*
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mRNA from alignment at chr2:657869..661136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02370.2 ID=NO02G02370.2|Name=NO02G02370.2|organism=Nannochloropsis oceanica|type=mRNA|length=3268bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA
CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC
GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG
CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA
TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC
TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG
CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA
CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG
TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT
GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA
TGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGA
TTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGTCACTG
CCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAA
TCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCC
AATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTT
CCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCC
ATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCA
CGTACGTCGTCCTCGTAGCCACCTTCCTTCCCCCCTCCCTCCCTTCCTGA
ATTCACGACAAAGACTTAATTTCTTCCTTTTTAAAAATAACAGGTGACCC
CCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCCTCATG
ACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGG
ATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGG
GGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGGGGCTA
CCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAGTTTGA
GAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGG
AGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGAGGGAT
GGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCGTTCTT
CTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGATAGCTG
TGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGTAGGGG
GAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGCTAGAAGGAGTGTAA
GCTAATGATGTAAATGCTTGTGACTTAAAAAAAATCTCTGGGACTGCTTC
GTGATGAAACAAACACACGCGTGCCCAGGTATCGCTTCGCTGAACAGGAA
AAATGACAAAGTAGGGATAGAACTTGTAAAAAATGACAAAGTAGGGATAG
AACTTGTATTCAATGACA
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Coding sequence (CDS) from alignment at chr2:657869..661136-

>NO02G02370.2 ID=NO02G02370.2|Name=NO02G02370.2|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
ATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTTTTCTTCTTC
TATTTCTGGCAGGTGTGCCTCGATCCGCACGGCACCTGAAGACACTCACT
TCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAGCGGGCACAAGAG
GTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTTTGTAGTAGCGGA
GACATATGCTCACAAACTGACTTATCTTGCCCCCGTCTGGTATCAGCTAA
GAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAGCGACAGCAGTTG
GAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCTCGACAATGTACG
ACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGATTTGGGAGGTAC
CGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTGGGGCTGTTGGTG
GACGAGGCGAAGGAGAGGAATTACGATGGGTATACACTCGAATTCCCAAT
CGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTTCCC
TCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCCATT
CCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCACGT
GACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCC
TCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCC
CTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGA
GGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGG
GGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAG
TTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTG
GGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGA
GGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCG
TTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGAT
AGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGT
AG
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Synonyms
Publications