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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr2 | genome | chr2:657869..661136 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02370.1 vs.
Match: EWM30429.1 (ca2 :cation antiporter family [Nannochloropsis gaditana]) HSP 1 Score: 433.7 bits (1114), Expect = 7.500e-118 Identity = 242/444 (54.50%), Postives = 297/444 (66.89%), Query Frame = 0
Query: 50 MQRPSVKKGQHKKPPPSSSPPSHAAATSS--LFSFHVLA--LLSVYAFAAFFFFYFWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQRAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQLELTGKHEFNGTWLDNVRHKS-GRVRIVPRVIWEVPAFVNPEQVAEVVGLLVDEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPILIVAIPAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGAPNSPLGWMEETIESFVQGRKEGGADKG-ADLVKIKMLLGLPWYGYVGGQAIVGHEFERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTFPTPAFFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW 488
MQR VKK ++ P SS PS A S+ + F ++A ++S+ W+ T A++ET + TL HL+ CA E + QR QEVLAY TPWNRQGF VAETYAHKLT+L+PVWYQLR Q ++ + + LELTG HEFN TWL NVR+KS RVRIVPRVIWEVPAFV P QV + LL +EA++R +DGYTLEFP+D G+FA LT SLK +LS+AIP P LIVAIPAFQMPTRP TP E HVTP +LL+L+PHV RFSLMTYDY + PSGAP SPL W+ T+E + +EG K A +++ KMLLGLPWYGY GGQAI GHEF++ VL+R E VRR W E++QE +F G + +E+ T+PTPAFF RRFAL E+G+AG+AVWE GQGL CFPMLW
Sbjct: 1 MQRAKVKKKPTQQTVPLSSCPSETKAISNTKFWHFAIIAALMISLIVTTVTIVPLNWRQFGTRHNAIFETNDFTLAHLQNCAQSDAVLE-----------QPPEQRPQEVLAYTTPWNRQGFAVAETYAHKLTFLSPVWYQLRAP--QLQRNDYDGRGLELTGGHEFNNTWLRNVRNKSKNRVRIVPRVIWEVPAFVLPTQVPIITQLLAEEARDRGFDGYTLEFPVDEHGIFAELTRSLKNALSEAIPLLSSPTLIVAIPAFQMPTRPQTPPEYHVTPRLLLTLAPHVSRFSLMTYDYAQTPSGAPISPLPWVMRTVE--MLSNREGEQGKADARILRGKMLLGLPWYGYAGGQAITGHEFQKNVLDRAEHVRRVWWDEDTQEHVFVYSASHGEEA--GEEVRATYPTPAFFKRRFALSRELGLAGVAVWEAGQGLVCFPMLW 427
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2997bp AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA TGGGTATACACTCGAATTCCCAATCGACGCCCGCGGGGTTTTCGCGCATC TCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTG CCTCCCATTCTTATCGTGGCCATTCCTGCATTTCAAATGCCTACCCGTCC GGCGACCCCGCGGGAGATGCACGTGACCCCCTCAATGCTTCTCTCCCTTT CACCGCACGTGGACCGTTTTTCCCTCATGACGTACGACTATGGCCGCGAT CCCTCCGGCGCGCCAAACAGCCCCCTGGGATGGATGGAAGAGACCATTGA GAGCTTCGTTCAAGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATT TGGTTAAGATAAAGATGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGT GGTCAGGCGATTGTGGGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACC TGAGAAGGTACGGCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTT TTTCTTTACGAGGGGAGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATG GTAGGGACTTTCCCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGT AAGTGAAATGGGTATGGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGT TAGAGTGTTTTCCGATGCTCTGGTAGGGGGAGGAGTTGATGGTGGTGGTA GCGGTCTTTTGTCGCTAGAAGGAGTGTAAGCTAATGATGTAAATGCTTGT GACTTAAAAAAAATCTCTGGGACTGCTTCGTGATGAAACAAACACACGCG TGCCCAGGTATCGCTTCGCTGAACAGGAAAAATGACAAAGTAGGGATAGA ACTTGTAAAAAATGACAAAGTAGGGATAGAACTTGTATTCAATGACA back to topprotein sequence of NO02G02370.1 >NO02G02370.1-protein ID=NO02G02370.1-protein|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp MIRQFGVIRVERCITTPLYSCTCSKPTPNVVDSRIQASPSRDSISDSPAM QRPSVKKGQHKKPPPSSSPPSHAAATSSLFSFHVLALLSVYAFAAFFFFY FWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQ RAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQ RQQLELTGKHEFNGTWLDNVRHKSGRVRIVPRVIWEVPAFVNPEQVAEVV GLLVDEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPIL IVAIPAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGA PNSPLGWMEETIESFVQGRKEGGADKGADLVKIKMLLGLPWYGYVGGQAI VGHEFERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTF PTPAFFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW* back to topmRNA from alignment at chr2:657869..661136- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3268bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica) AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA
CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC
GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG
CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA
TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC
TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG
CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA
CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG
TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT
GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA
TGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGA
TTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGTCACTG
CCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAA
TCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCC
AATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTT
CCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCC
ATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCA
CGTACGTCGTCCTCGTAGCCACCTTCCTTCCCCCCTCCCTCCCTTCCTGA
ATTCACGACAAAGACTTAATTTCTTCCTTTTTAAAAATAACAGGTGACCC
CCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCCTCATG
ACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGG
ATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGG
GGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGGGGCTA
CCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAGTTTGA
GAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGG
AGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGAGGGAT
GGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCGTTCTT
CTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGATAGCTG
TGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGTAGGGG
GAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGCTAGAAGGAGTGTAA
GCTAATGATGTAAATGCTTGTGACTTAAAAAAAATCTCTGGGACTGCTTC
GTGATGAAACAAACACACGCGTGCCCAGGTATCGCTTCGCTGAACAGGAA
AAATGACAAAGTAGGGATAGAACTTGTAAAAAATGACAAAGTAGGGATAG
AACTTGTATTCAATGACA back to topCoding sequence (CDS) from alignment at chr2:657869..661136- >NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica) ATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTGTATTACGACCCC TCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACGTTGTCGACAGCA GGATACAGGCATCGCCATCCCGTGATAGCATCAGCGACAGCCCGGCCATG CAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCCACCACCATCGTC TTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCTTCAGCTTTCATG TCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTTTTCTTCTTCTAT TTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTACGAGACGCAGAA CCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCCGCACGGCACCTG AAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAG CGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTT TGTAGTAGCGGAGACATATGCTCACAAACTGACTTATCTTGCCCCCGTCT GGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAG CGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCT CGACAATGTACGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGA TTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTG GGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGATGGGTATACACT CGAATTCCCAATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCC TCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTT ATCGTGGCCATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCG GGAGATGCACGTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGG ACCGTTTTTCCCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCG CCAAACAGCCCCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCA AGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAA AGATGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATT GTGGGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACG GCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAG GGGAGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTC CCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGG TATGGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTC CGATGCTCTGGTAG back to top
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