NO02G02370.1, NO02G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02370.1
Unique NameNO02G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2997
Alignment locationchr2:657869..661136 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:657869..661136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO02G02370.1 vs.
Match: EWM30429.1 (ca2 :cation antiporter family [Nannochloropsis gaditana])

HSP 1 Score: 433.7 bits (1114), Expect = 7.500e-118
Identity = 242/444 (54.50%), Postives = 297/444 (66.89%), Query Frame = 0
Query:   50 MQRPSVKKGQHKKPPPSSSPPSHAAATSS--LFSFHVLA--LLSVYAFAAFFFFYFWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQRAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQRQQLELTGKHEFNGTWLDNVRHKS-GRVRIVPRVIWEVPAFVNPEQVAEVVGLLVDEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPILIVAIPAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGAPNSPLGWMEETIESFVQGRKEGGADKG-ADLVKIKMLLGLPWYGYVGGQAIVGHEFERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTFPTPAFFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW 488
            MQR  VKK   ++  P SS PS   A S+   + F ++A  ++S+           W+   T   A++ET + TL HL+ CA      E           +   QR QEVLAY TPWNRQGF VAETYAHKLT+L+PVWYQLR    Q ++  +  + LELTG HEFN TWL NVR+KS  RVRIVPRVIWEVPAFV P QV  +  LL +EA++R +DGYTLEFP+D  G+FA LT SLK +LS+AIP    P LIVAIPAFQMPTRP TP E HVTP +LL+L+PHV RFSLMTYDY + PSGAP SPL W+  T+E  +   +EG   K  A +++ KMLLGLPWYGY GGQAI GHEF++ VL+R E VRR  W E++QE +F      G +    +E+  T+PTPAFF RRFAL  E+G+AG+AVWE GQGL CFPMLW
Sbjct:    1 MQRAKVKKKPTQQTVPLSSCPSETKAISNTKFWHFAIIAALMISLIVTTVTIVPLNWRQFGTRHNAIFETNDFTLAHLQNCAQSDAVLE-----------QPPEQRPQEVLAYTTPWNRQGFAVAETYAHKLTFLSPVWYQLRAP--QLQRNDYDGRGLELTGGHEFNNTWLRNVRNKSKNRVRIVPRVIWEVPAFVLPTQVPIITQLLAEEARDRGFDGYTLEFPVDEHGIFAELTRSLKNALSEAIPLLSSPTLIVAIPAFQMPTRPQTPPEYHVTPRLLLTLAPHVSRFSLMTYDYAQTPSGAPISPLPWVMRTVE--MLSNREGEQGKADARILRGKMLLGLPWYGYAGGQAITGHEFQKNVLDRAEHVRRVWWDEDTQEHVFVYSASHGEEA--GEEVRATYPTPAFFKRRFALSRELGLAGVAVWEAGQGLVCFPMLW 427          
The following BLAST results are available for this feature:
BLAST of NO02G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30429.17.500e-11854.50ca2 :cation antiporter family [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02370NO02G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02370.1NO02G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02370.1.cds1NO02G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02370.1.cds2NO02G02370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02370.1.cds3NO02G02370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2997bp
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC
TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG
GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC
ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG
CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA
TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA
AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC
AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC
TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT
CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA
TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA
GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG
GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT
TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA
AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG
CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC
CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT
GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG
TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA
GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG
GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG
TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA
CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG
CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC
ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG
TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG
GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG
TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG
TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC
AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC
ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT
TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT
TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA
CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC
GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG
CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA
TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC
TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG
CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA
CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG
TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT
GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA
TGGGTATACACTCGAATTCCCAATCGACGCCCGCGGGGTTTTCGCGCATC
TCACCAGCAGCCTCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTG
CCTCCCATTCTTATCGTGGCCATTCCTGCATTTCAAATGCCTACCCGTCC
GGCGACCCCGCGGGAGATGCACGTGACCCCCTCAATGCTTCTCTCCCTTT
CACCGCACGTGGACCGTTTTTCCCTCATGACGTACGACTATGGCCGCGAT
CCCTCCGGCGCGCCAAACAGCCCCCTGGGATGGATGGAAGAGACCATTGA
GAGCTTCGTTCAAGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATT
TGGTTAAGATAAAGATGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGT
GGTCAGGCGATTGTGGGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACC
TGAGAAGGTACGGCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTT
TTTCTTTACGAGGGGAGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATG
GTAGGGACTTTCCCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGT
AAGTGAAATGGGTATGGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGT
TAGAGTGTTTTCCGATGCTCTGGTAGGGGGAGGAGTTGATGGTGGTGGTA
GCGGTCTTTTGTCGCTAGAAGGAGTGTAAGCTAATGATGTAAATGCTTGT
GACTTAAAAAAAATCTCTGGGACTGCTTCGTGATGAAACAAACACACGCG
TGCCCAGGTATCGCTTCGCTGAACAGGAAAAATGACAAAGTAGGGATAGA
ACTTGTAAAAAATGACAAAGTAGGGATAGAACTTGTATTCAATGACA
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protein sequence of NO02G02370.1

>NO02G02370.1-protein ID=NO02G02370.1-protein|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MIRQFGVIRVERCITTPLYSCTCSKPTPNVVDSRIQASPSRDSISDSPAM
QRPSVKKGQHKKPPPSSSPPSHAAATSSLFSFHVLALLSVYAFAAFFFFY
FWQGKQTHEKAMYETQNLTLDHLRQCASIRTAPEDTHFAASMSWSEQSNQ
RAQEVLAYVTPWNRQGFVVAETYAHKLTYLAPVWYQLRKQHQQQEQQQHQ
RQQLELTGKHEFNGTWLDNVRHKSGRVRIVPRVIWEVPAFVNPEQVAEVV
GLLVDEAKERNYDGYTLEFPIDARGVFAHLTSSLKASLSQAIPPSLPPIL
IVAIPAFQMPTRPATPREMHVTPSMLLSLSPHVDRFSLMTYDYGRDPSGA
PNSPLGWMEETIESFVQGRKEGGADKGADLVKIKMLLGLPWYGYVGGQAI
VGHEFERKVLERPEKVRRFEWGEESQELIFSLRGEGGRDGRRQDEMVGTF
PTPAFFWRRFALVSEMGMAGIAVWEVGQGLECFPMLW*
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mRNA from alignment at chr2:657869..661136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3268bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
AACGTGAAATTTCCTGCTGTTTCGCTTCTTTGTCGTCATAATCGTTTTTC TACACGTACGCCTCCATACCTTAAACCTTACCATGCTTTCATGATACCAG GTCGGGCGTTATTTTCTCTCTTCGTTTTATCTCCTACTTGCAACCCAAAC ATTTCATAGGTTCTGGGATCGTCCTCATCTGCTGCCTCCCTTCATCCCTG CCTCCTTCCCTCCTTCCCTCCCTCGTCATGCATCATCATCAATTACTTCA TCGCAGCCGCCCGGTGTGCCAGGCAACTAACATACTCAGTTAACTTTACA AGTCACCGGCTTCTTGGACCATCACCTTCGCCCATCCAGAGTCAATTGGC AGGACCTCATCCCTCCACCACCTTCCCTCCTCCCGCTTCGTTTCGTTTCC TCTTGGCTCTCGACTCCACCCACCAGCCTCCTGCTTCTCCTGCACCTCCT CCTTTTCGTAAAAATGACATCACTTTTTCGACCGCTCGGTAGGCAAGTAA TACTGCTCCGTTTGGAAGCCCATGGACTCCCGCAAGGGGGTCACCCAAAA GGGCAAGGACAGACCAAAAACCGCGATGCCCATGCTGAACGACACGACGG GCTCCCGATCGATAAAGCGCTTCACGAAGCGACCCATGCTAAAAGCCATT TGGATTGACCTGGAATGTTTATAGGGAGGGATTTGTGGGTGGGTAACTCA AGCGGAGACAACTTTCGGGTCGAACTGAACTATAGAGGTCGCGTGGGCCG CGTCTTGAACTTGCAGGAAAACTTTTTGGGAAAGAAGAGGGGGTGATTTC CAAGCGCAATGCAGCATCAACATGCATTTCTCCGCCTGGGGAGCAGGGAT GTGTACGAAAGCGTATATATAAGCGGTCCGGTCACCAGTCTTAGACGTGG TTCGCCGGACAGAGGGAAGAGGTTGCCAGGCGACCCAGAAAACGAATGCA GCACAGGTGCACTCCCCATCGCCACGCGCCCATGCTTGCACCCTACTCAG GCTCCTGCCCATGTCTGTCCTTGGCTGGCTGGTGGCATAGCGAGTGGGCG TGGCTGTTGTGCGGGGCTGGTCTCGGTACAAGGAGAGAGATCCAGATCCA CCCACGCCTTGCTGAAAATAGCTTCGACTCGGATGATGATTGAGGGATTG CTTGCGGAGGCCAAAGCCGCCGATACACAGCGCAAGCCTTCTAGCCTCCC ACAACCGAAATAAAGCTCCTGAGTAAGAGCTGTACAATGGGAAATGCTTG TCGGTGTTTTAGTTGGGTCATGAGCGTCGTTGTCAAAGCGGTGCGTGGTG GTCACGACGCCGATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTG TATTACGACCCCTCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACG TTGTCGACAGCAGGATACAGGCATCGCCATCCCGTGATAGCATCAGCGAC AGCCCGGCCATGCAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCC ACCACCATCGTCTTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCT TCAGCTTTCATGTCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTT TTCTTCTTCTATTTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTA CGAGACGCAGAACCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCC GCACGGCACCTGAAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAG CAATCAAATCAGCGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAA TCGACAAGGTTTTGTAGTAGCGGAGACATATGCTCACAAACTGACTTATC TTGCCCCCGTCTGGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAG CAGCAGCATCAGCGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAA CGGCACGTGGCTCGACAATGTACGACACAAATCAGGCCGCGTGCGTATTG TCCCGCGGGTGATTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTT GCCGAGGTCGTGGGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGA TGGGTGCGTACCAGGGAGAAACAATTTCGAAGAAGGGCCTTATTTTCAGA TTTCCAGCCATAGAGAAATCAATCTATATTTCCACGATTTCTTGTCACTG CCGGTCTTTCTCTGCACTGTCTTCCCATTTTTCCTCCTTCCATCCCTCAA TCCCTTCCTCCCTCCTCCACCACTCTGTTCAGGTATACACTCGAATTCCC AATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCCTCAAGGCTT CCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTTATCGTGGCC ATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCGGGAGATGCA CGTACGTCGTCCTCGTAGCCACCTTCCTTCCCCCCTCCCTCCCTTCCTGA ATTCACGACAAAGACTTAATTTCTTCCTTTTTAAAAATAACAGGTGACCC CCTCAATGCTTCTCTCCCTTTCACCGCACGTGGACCGTTTTTCCCTCATG ACGTACGACTATGGCCGCGATCCCTCCGGCGCGCCAAACAGCCCCCTGGG ATGGATGGAAGAGACCATTGAGAGCTTCGTTCAAGGGAGGAAGGAGGGGG GGGCAGATAAGGGGGCGGATTTGGTTAAGATAAAGATGTTGTTGGGGCTA CCCTGGTATGGGTATGTGGGTGGTCAGGCGATTGTGGGACACGAGTTTGA GAGAAAAGTCTTAGAGAGACCTGAGAAGGTACGGCGTTTTGAGTGGGGGG AGGAGAGTCAGGAGCTTATTTTTTCTTTACGAGGGGAGGGAGGGAGGGAT GGAAGGAGGCAAGACGAGATGGTAGGGACTTTCCCGACGCCGGCGTTCTT CTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGGTATGGCCGGGATAGCTG TGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTCCGATGCTCTGGTAGGGG GAGGAGTTGATGGTGGTGGTAGCGGTCTTTTGTCGCTAGAAGGAGTGTAA GCTAATGATGTAAATGCTTGTGACTTAAAAAAAATCTCTGGGACTGCTTC GTGATGAAACAAACACACGCGTGCCCAGGTATCGCTTCGCTGAACAGGAA AAATGACAAAGTAGGGATAGAACTTGTAAAAAATGACAAAGTAGGGATAG AACTTGTATTCAATGACA
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Coding sequence (CDS) from alignment at chr2:657869..661136-

>NO02G02370.1 ID=NO02G02370.1|Name=NO02G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr2:657869..661136- (Nannochloropsis oceanica)
ATGATTCGCCAATTTGGCGTAATTCGCGTTGAGCGCTGTATTACGACCCC
TCTTTATTCCTGCACCTGCTCTAAACCCACTCCCAACGTTGTCGACAGCA
GGATACAGGCATCGCCATCCCGTGATAGCATCAGCGACAGCCCGGCCATG
CAGCGCCCCAGCGTCAAAAAAGGGCAGCACAAAAAGCCACCACCATCGTC
TTCACCGCCATCGCACGCAGCAGCCACCTCCTCCCTCTTCAGCTTTCATG
TCCTGGCCCTTCTCTCTGTTTACGCTTTTGCCGCTTTTTTCTTCTTCTAT
TTCTGGCAGGGTAAGCAGACTCATGAAAAGGCCATGTACGAGACGCAGAA
CCTAACGCTAGACCACCTACGACAGTGTGCCTCGATCCGCACGGCACCTG
AAGACACTCACTTCGCTGCCTCCATGTCCTGGAGTGAGCAATCAAATCAG
CGGGCACAAGAGGTGCTAGCCTATGTCACACCCTGGAATCGACAAGGTTT
TGTAGTAGCGGAGACATATGCTCACAAACTGACTTATCTTGCCCCCGTCT
GGTATCAGCTAAGAAAACAACATCAGCAGCAAGAGCAGCAGCAGCATCAG
CGACAGCAGTTGGAGCTGACGGGCAAACACGAGTTCAACGGCACGTGGCT
CGACAATGTACGACACAAATCAGGCCGCGTGCGTATTGTCCCGCGGGTGA
TTTGGGAGGTACCGGCGTTTGTAAACCCAGAACAGGTTGCCGAGGTCGTG
GGGCTGTTGGTGGACGAGGCGAAGGAGAGGAATTACGATGGGTATACACT
CGAATTCCCAATCGACGCCCGCGGGGTTTTCGCGCATCTCACCAGCAGCC
TCAAGGCTTCCCTCTCTCAGGCTATTCCTCCCTCCTTGCCTCCCATTCTT
ATCGTGGCCATTCCTGCATTTCAAATGCCTACCCGTCCGGCGACCCCGCG
GGAGATGCACGTGACCCCCTCAATGCTTCTCTCCCTTTCACCGCACGTGG
ACCGTTTTTCCCTCATGACGTACGACTATGGCCGCGATCCCTCCGGCGCG
CCAAACAGCCCCCTGGGATGGATGGAAGAGACCATTGAGAGCTTCGTTCA
AGGGAGGAAGGAGGGGGGGGCAGATAAGGGGGCGGATTTGGTTAAGATAA
AGATGTTGTTGGGGCTACCCTGGTATGGGTATGTGGGTGGTCAGGCGATT
GTGGGACACGAGTTTGAGAGAAAAGTCTTAGAGAGACCTGAGAAGGTACG
GCGTTTTGAGTGGGGGGAGGAGAGTCAGGAGCTTATTTTTTCTTTACGAG
GGGAGGGAGGGAGGGATGGAAGGAGGCAAGACGAGATGGTAGGGACTTTC
CCGACGCCGGCGTTCTTCTGGAGGAGGTTTGCGTTGGTAAGTGAAATGGG
TATGGCCGGGATAGCTGTGTGGGAGGTAGGACAGGGGTTAGAGTGTTTTC
CGATGCTCTGGTAG
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Synonyms
Publications