NO02G02220.1, NO02G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02220.1
Unique NameNO02G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1597
Alignment locationchr2:623842..626074 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:623842..626074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02220.1 vs.
Match: EWM30432.1 (serine protease family s09x [Nannochloropsis gaditana])

HSP 1 Score: 530.0 bits (1364), Expect = 6.900e-147
Identity = 251/354 (70.90%), Postives = 298/354 (84.18%), Query Frame = 0 
Query:   82 TMGGALSQLLRSTWLANLMWMSGSILALGLGALYYFQDQLLYHPSIPGMPQTPRENPPGYRSPADHGIHDYEEHFIKTDDGATIHAWLLLHPDSLSLPTVVYFHGNAGNMGFRLPHGSNLFKQCRVNVLLMDYRGYGSSKGIPSEHGLLSDARAVLATLQAHPRVASDRIVLYGKSLGGAVALAVTEVKPDDVLALVLENTFLSIPAMVDVLMPLVKVFKGFILRIGWHSDRRVALLSQPMLFMSGLNDELVPPAHMRELKERATSSVWTQLYTVADGTHNDTWHKGGIAYYRTYRDFIGRVMELLEEGKVGRRRKEGGKGACAET-----GLRGKVEERKVVGGSVPIVPSNS 431
            TMGGA + +LRS+W++NL+W  G +LALGLG LYYFQD LLYHPSIPGMP++PRENPPGYRSPA+HGIH++EEHF+KT+DGATIHAWLLL PDS S+PTVVYFHGNAGNMGFRLPHGSNL+KQCRVNV+++DYRGYGSSKG PSE GL +D RAVL TL+AH RVA D+IVLYGKSLGGAVALA+ E +PD+VLA+VLENTFLSIPAMVDVLMPLVK+FKG ILRIGW +DRRV+ L+ P+LFMSGL DELVPP+HMR+LKE A  SVW QLYTVADG HNDTW +GGIAYYR +RDF+G+V EL+ EGK G  +    +  CA T      + G+  +  + GGS+P++P  S
Sbjct:    2 TMGGAFTHILRSSWVSNLLWTGGGLLALGLGTLYYFQDNLLYHPSIPGMPKSPRENPPGYRSPAEHGIHNFEEHFLKTEDGATIHAWLLLQPDSASIPTVVYFHGNAGNMGFRLPHGSNLYKQCRVNVMMVDYRGYGSSKGTPSEEGLKADGRAVLTTLRAHRRVAPDQIVLYGKSLGGAVALALAEERPDEVLAVVLENTFLSIPAMVDVLMPLVKIFKGLILRIGWRNDRRVSQLAHPILFMSGLADELVPPSHMRQLKELAVRSVWAQLYTVADGQHNDTWFRGGIAYYRNFRDFLGKVAELVAEGKAG-SKATNAQNVCASTSSVTANVGGEGLQEGIAGGSIPVMPPAS 354
The following BLAST results are available for this feature:
BLAST of NO02G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30432.16.900e-14770.90serine protease family s09x [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02220NO02G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02220.1NO02G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02220.1.cds1NO02G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02220.1.cds2NO02G02220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02220.1 ID=NO02G02220.1|Name=NO02G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
CCAAAGCAAAGGCTCCCTGACTGTACATGCGAGCGGGCAAGAAGAAGGAG
CAAAGGACATCCATTCTACGCCCAAGAAAGTTTCTTTGGGCACTATTCAT
TCTCAAGCTCACATCCTCAACACTTTTGGCACTTTCTTCCCTCCCCGTAT
GGAACGCCGCCCTCACCCAGGTTGGTGGTGGGAAGACCACAGCCGCCTGC
GCAGCTCACAACCCCGCTTCTGCACAGCTCACGGATCTCTCCAACCCAGG
CGGCACCATCACAGGCAAAACCATGGGTGGCGCCCTTTCCCAACTCCTCC
GTTCCACCTGGCTAGCCAATCTCATGTGGATGAGCGGTAGCATCCTCGCC
CTCGGCCTCGGCGCACTCTATTACTTCCAAGACCAACTCCTCTACCATCC
CTCCATTCCCGGCATGCCCCAAACTCCTCGGGAGAACCCTCCTGGGTATC
GCTCCCCTGCCGACCACGGTATTCATGACTACGAAGAGCATTTCATCAAG
ACCGACGACGGTGCAACAATACACGCCTGGCTCCTTCTCCACCCTGACTC
TCTCTCTCTTCCCACGGTCGTTTATTTCCACGGCAACGCGGGTAATATGG
GATTTCGCCTCCCGCATGGCAGCAATCTCTTCAAGCAATGCCGTGTCAAT
GTCCTATTGATGGACTATCGGGGTTATGGTTCAAGCAAAGGCATTCCTAG
TGAGCATGGTCTGCTCTCTGATGCCCGCGCAGTGCTGGCCACCCTACAAG
CCCACCCTCGAGTCGCCTCAGATAGAATTGTTCTGTATGGCAAATCCCTA
GGAGGGGCTGTCGCACTCGCAGTCACAGAAGTAAAACCTGACGACGTTCT
GGCTTTGGTCCTGGAAAATACGTTTTTGAGCATCCCTGCCATGGTGGACG
TATTAATGCCTCTTGTCAAAGTGTTCAAAGGTTTCATTCTGCGGATCGGG
TGGCACAGCGACAGACGCGTTGCCTTGCTGTCGCAGCCGATGCTTTTCAT
GTCCGGCTTGAACGACGAATTGGTCCCTCCGGCGCACATGCGTGAGTTGA
AAGAGCGGGCGACGAGTAGTGTGTGGACGCAGCTGTACACGGTGGCAGAT
GGGACGCATAATGACACGTGGCATAAGGGAGGAATAGCGTATTATCGCAC
TTATCGAGATTTCATAGGCAGGGTCATGGAGCTTCTGGAAGAGGGAAAGG
TGGGGAGGAGGAGGAAAGAAGGGGGGAAAGGTGCATGTGCAGAAACGGGA
CTGAGGGGCAAGGTGGAGGAGCGGAAGGTGGTGGGAGGATCAGTTCCAAT
CGTACCGTCGAACAGCAGCAGCAGCAGCAGAAGTGACGCGAAGAAAAATG
AGTAAACTAGCGGTTGTAACAGCGAGAAGCGGACAAAAAATAAGAGAGCA
ATCAGATGTGAATTTACAATCAACGTCAGCAGCAGTGACCAGGAAAACAG
CAGCAGCAGCAGCAGCGGCAACAGCAGCAGCAAAGATGATTGTAATGATG
CTTGAAAATATCCTCTCCAAAAATACTGTACAAACTTAGTTGAAACACAA
AAGCTAAGCCCAAAAGACATTATTGTAGAAATAAGATGACACTCGAT
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protein sequence of NO02G02220.1

>NO02G02220.1-protein ID=NO02G02220.1-protein|Name=NO02G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MRAGKKKEQRTSILRPRKFLWALFILKLTSSTLLALSSLPVWNAALTQVG
GGKTTAACAAHNPASAQLTDLSNPGGTITGKTMGGALSQLLRSTWLANLM
WMSGSILALGLGALYYFQDQLLYHPSIPGMPQTPRENPPGYRSPADHGIH
DYEEHFIKTDDGATIHAWLLLHPDSLSLPTVVYFHGNAGNMGFRLPHGSN
LFKQCRVNVLLMDYRGYGSSKGIPSEHGLLSDARAVLATLQAHPRVASDR
IVLYGKSLGGAVALAVTEVKPDDVLALVLENTFLSIPAMVDVLMPLVKVF
KGFILRIGWHSDRRVALLSQPMLFMSGLNDELVPPAHMRELKERATSSVW
TQLYTVADGTHNDTWHKGGIAYYRTYRDFIGRVMELLEEGKVGRRRKEGG
KGACAETGLRGKVEERKVVGGSVPIVPSNSSSSSRSDAKKNE*
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mRNA from alignment at chr2:623842..626074+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02220.1 ID=NO02G02220.1|Name=NO02G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2233bp|location=Sequence derived from alignment at chr2:623842..626074+ (Nannochloropsis oceanica)
CCAAAGCAAAGGCTCCCTGACTGTACATGCGAGCGGGCAAGAAGAAGGAG
CAAAGGACATCCATTCTACGCCCAAGAAAGTTTCTTTGGGCACTATTCAT
TCTCAAGCTCACATCCTCAACACTTTTGGCACTTTCTTCCCTCCCCGTAT
GGAACGCCGCCCTCACCCAGGTTGGTGGTGGGAAGACCACAGCCGCCTGC
GCAGCTCACAACCCCGCTTCTGCACAGCTCACGGATCTCTCCAACCCAGG
CGGCACCATCACAGGTACGTAGCGAGAAACCAGCCATCCGATCCTCTCTC
TCTCCATGGGCTGGGCTATCTGCCTCGTTACTCTCTTTTGTGTGTGTGGC
GGTGCCGGCGGCGTTGTCGCTTTGGCACTGACGCGATCTATTTCACCAGT
CAACTAAGCCCCTGTGTGATGTGATGTATGCGAGCACGCCGTGAAGGGTG
GTTGGGCGCAGTGGATACGAGAGCACCTCTGCTCCAAGCTGGATCCCCCT
CCCTACCTCCCTTTATTCTTCCCTCCCTGCCCTCCCTCCCAACCTCCGTG
ACCCTTTTCTTCCTCAAAATGACAAGAGCTAAGGATTAAAATATATGCAT
TGGAGCTGGACTGAAAGTGTGCTGTCTTACGAGGCAATGCACGTGATGCT
CTTTAGTAATTTTCAACATGAAGCTTCTTGTATTGAGAATCTATTTATCT
GGCCATGATGCAGATGGTTGCGTCGGACGGGCGAGGAAAGGGTGGGCGAG
TGTGTCATGTTGTCCTGGAATATCGTGCCGTTGCCTACGCCTTTCCTTAT
CTTATGCTCCCTTGTGTCACCCTCGCCTTCTTCTCTTTTTCTTCCTCCAA
ACCACCCACATTCCCTCGTCCCCACCACCACCATACCTCGTCTCAAATAG
GCAAAACCATGGGTGGCGCCCTTTCCCAACTCCTCCGTTCCACCTGGCTA
GCCAATCTCATGTGGATGAGCGGTAGCATCCTCGCCCTCGGCCTCGGCGC
ACTCTATTACTTCCAAGACCAACTCCTCTACCATCCCTCCATTCCCGGCA
TGCCCCAAACTCCTCGGGAGAACCCTCCTGGGTATCGCTCCCCTGCCGAC
CACGGTATTCATGACTACGAAGAGCATTTCATCAAGACCGACGACGGTGC
AACAATACACGCCTGGCTCCTTCTCCACCCTGACTCTCTCTCTCTTCCCA
CGGTCGTTTATTTCCACGGCAACGCGGGTAATATGGGATTTCGCCTCCCG
CATGGCAGCAATCTCTTCAAGCAATGCCGTGTCAATGTCCTATTGATGGA
CTATCGGGGTTATGGTTCAAGCAAAGGCATTCCTAGTGAGCATGGTCTGC
TCTCTGATGCCCGCGCAGTGCTGGCCACCCTACAAGCCCACCCTCGAGTC
GCCTCAGATAGAATTGTTCTGTATGGCAAATCCCTAGGAGGGGCTGTCGC
ACTCGCAGTCACAGAAGTAAAACCTGACGACGTTCTGGCTTTGGTCCTGG
AAAATACGTTTTTGAGCATCCCTGCCATGGTGGACGTATTAATGCCTCTT
GTCAAAGTGTTCAAAGGTTTCATTCTGCGGATCGGGTGGCACAGCGACAG
ACGCGTTGCCTTGCTGTCGCAGCCGATGCTTTTCATGTCCGGCTTGAACG
ACGAATTGGTCCCTCCGGCGCACATGCGTGAGTTGAAAGAGCGGGCGACG
AGTAGTGTGTGGACGCAGCTGTACACGGTGGCAGATGGGACGCATAATGA
CACGTGGCATAAGGGAGGAATAGCGTATTATCGCACTTATCGAGATTTCA
TAGGCAGGGTCATGGAGCTTCTGGAAGAGGGAAAGGTGGGGAGGAGGAGG
AAAGAAGGGGGGAAAGGTGCATGTGCAGAAACGGGACTGAGGGGCAAGGT
GGAGGAGCGGAAGGTGGTGGGAGGATCAGTTCCAATCGTACCGTCGAACA
GCAGCAGCAGCAGCAGAAGTGACGCGAAGAAAAATGAGTAAACTAGCGGT
TGTAACAGCGAGAAGCGGACAAAAAATAAGAGAGCAATCAGATGTGAATT
TACAATCAACGTCAGCAGCAGTGACCAGGAAAACAGCAGCAGCAGCAGCA
GCGGCAACAGCAGCAGCAAAGATGATTGTAATGATGCTTGAAAATATCCT
CTCCAAAAATACTGTACAAACTTAGTTGAAACACAAAAGCTAAGCCCAAA
AGACATTATTGTAGAAATAAGATGACACTCGAT
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Coding sequence (CDS) from alignment at chr2:623842..626074+

>NO02G02220.1 ID=NO02G02220.1|Name=NO02G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=1329bp|location=Sequence derived from alignment at chr2:623842..626074+ (Nannochloropsis oceanica)
ATGCGAGCGGGCAAGAAGAAGGAGCAAAGGACATCCATTCTACGCCCAAG
AAAGTTTCTTTGGGCACTATTCATTCTCAAGCTCACATCCTCAACACTTT
TGGCACTTTCTTCCCTCCCCGTATGGAACGCCGCCCTCACCCAGGTTGGT
GGTGGGAAGACCACAGCCGCCTGCGCAGCTCACAACCCCGCTTCTGCACA
GCTCACGGATCTCTCCAACCCAGGCGGCACCATCACAGGCAAAACCATGG
GTGGCGCCCTTTCCCAACTCCTCCGTTCCACCTGGCTAGCCAATCTCATG
TGGATGAGCGGTAGCATCCTCGCCCTCGGCCTCGGCGCACTCTATTACTT
CCAAGACCAACTCCTCTACCATCCCTCCATTCCCGGCATGCCCCAAACTC
CTCGGGAGAACCCTCCTGGGTATCGCTCCCCTGCCGACCACGGTATTCAT
GACTACGAAGAGCATTTCATCAAGACCGACGACGGTGCAACAATACACGC
CTGGCTCCTTCTCCACCCTGACTCTCTCTCTCTTCCCACGGTCGTTTATT
TCCACGGCAACGCGGGTAATATGGGATTTCGCCTCCCGCATGGCAGCAAT
CTCTTCAAGCAATGCCGTGTCAATGTCCTATTGATGGACTATCGGGGTTA
TGGTTCAAGCAAAGGCATTCCTAGTGAGCATGGTCTGCTCTCTGATGCCC
GCGCAGTGCTGGCCACCCTACAAGCCCACCCTCGAGTCGCCTCAGATAGA
ATTGTTCTGTATGGCAAATCCCTAGGAGGGGCTGTCGCACTCGCAGTCAC
AGAAGTAAAACCTGACGACGTTCTGGCTTTGGTCCTGGAAAATACGTTTT
TGAGCATCCCTGCCATGGTGGACGTATTAATGCCTCTTGTCAAAGTGTTC
AAAGGTTTCATTCTGCGGATCGGGTGGCACAGCGACAGACGCGTTGCCTT
GCTGTCGCAGCCGATGCTTTTCATGTCCGGCTTGAACGACGAATTGGTCC
CTCCGGCGCACATGCGTGAGTTGAAAGAGCGGGCGACGAGTAGTGTGTGG
ACGCAGCTGTACACGGTGGCAGATGGGACGCATAATGACACGTGGCATAA
GGGAGGAATAGCGTATTATCGCACTTATCGAGATTTCATAGGCAGGGTCA
TGGAGCTTCTGGAAGAGGGAAAGGTGGGGAGGAGGAGGAAAGAAGGGGGG
AAAGGTGCATGTGCAGAAACGGGACTGAGGGGCAAGGTGGAGGAGCGGAA
GGTGGTGGGAGGATCAGTTCCAATCGTACCGTCGAACAGCAGCAGCAGCA
GCAGAAGTGACGCGAAGAAAAATGAGTAA
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Synonyms
Publications