NO02G01400.1, NO02G01400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G01400.1
Unique Name	NO02G01400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2082
Alignment location	chr2:417623..419814 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:417623..419814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO02G01400.1 vs.
Match: GAX93342.1 (Hypothetical protein PINS_001252 [Pythium insidiosum])

HSP 1 Score: 249.2 bits (635), Expect = 3.700e-62
Identity = 153/520 (29.42%), Postives = 274/520 (52.69%), Query Frame = 0

Query:   87 LAIVTSGSVPTPLDTDSVNYLDTLGSGN--RAAACAEEFLRKGYHVIFLYRDGSLRPFSRVLAKRMKKTHALTDQVQLNSKTGRVELVMDADEEARMTQVLMAYESVKLRLLEVSFSDLFEYLYLLREACRAAAPLRHGALLFMAAGLTKMFIPRHELTRPSATFLDQGKEALKLYPVPHIIRAARQSWCPQAFLVAFKLENDTLSLVEGAHRLLERHGVHLVVGNVVRERNRRVLIVTERDEIKLVSPHENELEPSMVKAVVRNHKQFALEKEALKSSRSLLGLSAKFTMLRENKSVVDTDAYGRKQVPFKVGLRIKADRH-KADSPIYELKAVYSTKGGSARANLWQRVIEEEGEGEEEGGEGESRKSSSDTATPTSSTAALANPVTPTTIAKGKGELLLTFSPAGNPETILSLWGDTYKGWLEEEVKHLLAAASHIPLTTYLKILASPLTADFTDLADLLAQLRTSIASAWKKREKTQFVQSYNNLMSLAFDRALMPLEGLMDAQELLDRRREMEME 604
            +A+VTSG+   PLD     ++D        +  ACAE  L  GY VIF++R+ S +PF+R   K ++    L     L+ +  ++ L +D ++ +R   ++  Y   K RLL VSF+ + +YL+LLR + +A    +  A++ +AA + + ++P  +   P+++    G+ ++    VP++IR  R+ WCP+AF+V FK       ++E AH  LE+ GV +V G    E   ++L+V+ ++E  +  P + ++  +   ++   H+ F   +E L+  + LL L+AKF ML+E +  ++ DA G K V F  G++I ADR     +P+YELK ++  K   ARA++W+  IE            +S  S  D                           ++ FSPAGNPETI S+WGD + GW E+E+  +     ++ L++ L ++AS ++ D+T  ++L+  + + I +AW   E+T+  QS  N++++  +R L+    +   +E++ + R    +
Sbjct:   62 IALVTSGATAVPLDPAVHTFVDQSSQVQEYQGPACAEYLLHLGYAVIFVHREDSQQPFTRHFRKYIQNGAFLE---MLHLQNDQIVLDVDQNQRSRFANIVHHYRDSKDRLLNVSFTSVQQYLHLLRLSTKAINAAKSRAIVILAASVMEFYVPVQQNRSPTSSQRRNGEFSVNFVRVPNLIRKIRKKWCPKAFVVTFKHHLKDNEMIEQAHEDLEKWGVDVVAGTNRHEYPHQILLVSAQEESIVSCPEDEDINDAFASSIAELHRNFRRTREILEKGKQLLILTAKFAMLKE-RDAINEDADGNKNVKFGKGVKICADRRVSGKAPVYELKHIFQNKSHCARAHVWESKIEH-----------KSGASGLDV--------------------------VVAFSPAGNPETIKSVWGDFWSGWAEKELIEVKDQLVNVSLSSALGVVASSISGDYTPASNLIQYMWSKIGTAWTDGEQTRIRQSLQNMIAVGLNRGLVEATDITPLEEIIRKPRTQRFD 540

The following BLAST results are available for this feature:

BLAST of NO02G01400.1 vs.

BLAST of NO02G01400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
GAX93342.1	3.700e-62	29.42	Hypothetical protein PINS_001252 [Pythium insidios...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G01400	NO02G01400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01400.1	NO02G01400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G01400.1.cds1	NO02G01400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G01400.1.cds2	NO02G01400.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:417623..419814+
coding sequence from alignment at chr2:417623..419814+

mRNA sequence

>NO02G01400.1 ID=NO02G01400.1|Name=NO02G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp
ATGTGGTTTAACCAGGCGGGAAGGAACCCCAAGCCGGATGATGATGCTTA
CATAGCCGCCTTTTTCGAGGACCTGGACGGGGCCAGCCCTGGAGACAGAG
GTAACTGCTCAACCACACTGGCGGCCTCATCCTCGGATGCCGCCACTCAA
ATCCGCACCTTTATCGAGCAGGAGGAGCAGGAGCAGTCACCAGGGTCTCA
AACCTTTCCCCCGATTTCCCACGATGAGTTCACCTCTGCCCTATTGCCCA
TCACGCGCCTGGCCATTGTCACGAGCGGTTCTGTTCCGACTCCCCTGGAC
ACGGATTCAGTCAATTACCTGGACACTTTGGGGTCGGGTAATCGTGCGGC
AGCATGTGCGGAAGAATTTTTGAGGAAAGGGTATCATGTCATATTCTTGT
ACCGAGACGGATCTTTACGCCCCTTTTCCCGAGTCCTGGCCAAGCGTATG
AAAAAAACACATGCGCTGACAGATCAAGTGCAATTAAATTCGAAGACGGG
CCGCGTGGAGCTGGTGATGGATGCGGATGAGGAAGCGCGCATGACCCAAG
TCCTCATGGCGTATGAGTCGGTCAAGCTGCGTCTACTCGAAGTGTCCTTT
TCTGATCTGTTTGAGTACTTATATCTTTTGCGAGAAGCCTGCCGCGCCGC
CGCGCCATTGCGCCATGGAGCCTTGCTCTTTATGGCTGCTGGATTGACGA
AAATGTTTATTCCTCGCCATGAGTTGACTCGACCTTCAGCTACTTTCCTT
GATCAGGGCAAGGAGGCCTTGAAGCTCTACCCCGTGCCACACATAATTCG
CGCCGCGCGGCAATCCTGGTGTCCTCAGGCTTTTCTCGTGGCCTTCAAAC
TGGAGAACGACACCCTAAGCCTGGTCGAAGGGGCGCATCGCTTGCTGGAG
AGGCATGGCGTGCATCTTGTGGTCGGCAACGTCGTCCGCGAGAGGAATCG
CCGCGTCCTAATCGTGACTGAGCGAGATGAAATTAAGCTGGTCTCTCCGC
ATGAAAACGAGTTAGAGCCTAGTATGGTCAAAGCCGTGGTGCGAAATCAC
AAGCAATTTGCCTTGGAGAAAGAAGCCCTCAAATCCAGTCGTTCCTTACT
CGGGCTCTCTGCGAAGTTTACCATGCTGAGGGAAAACAAGAGCGTTGTGG
ACACGGATGCATACGGGAGGAAGCAAGTTCCTTTTAAAGTCGGTTTGCGG
ATTAAGGCGGATCGACACAAGGCGGACTCGCCGATTTATGAGCTCAAGGC
CGTTTATTCCACCAAGGGAGGTTCTGCACGGGCCAATTTGTGGCAACGTG
TGATCGAGGAGGAGGGCGAGGGAGAGGAGGAGGGAGGGGAAGGAGAGAGC
AGAAAGAGTAGCAGCGACACGGCAACCCCTACTTCTTCTACTGCTGCTTT
AGCCAATCCCGTGACACCCACGACCATCGCCAAAGGAAAAGGAGAGCTTC
TTCTAACCTTCTCGCCCGCAGGCAACCCCGAAACCATCCTCAGCCTGTGG
GGCGACACTTACAAAGGCTGGCTCGAAGAAGAAGTCAAACACCTACTTGC
TGCCGCCAGTCATATTCCTCTCACCACCTACTTGAAGATCCTCGCCTCAC
CGTTGACTGCTGATTTCACCGACCTAGCGGACCTCCTGGCACAACTCCGC
ACCTCAATCGCGAGTGCGTGGAAGAAGCGGGAAAAGACGCAGTTCGTCCA
GAGTTATAACAATTTGATGAGTCTGGCATTCGATCGGGCCTTGATGCCTT
TGGAAGGATTGATGGACGCTCAGGAGTTGCTGGACCGACGGAGGGAGATG
GAGATGGAGGAGGAGTGGGGGAGAGGGGGGTCAGTGTCTTCCTGCTCGAC
CTCCTCCTCCCTGTCAGTTCGATTTGGCCGTTCCCCTAGAGGATCCATTG
GTGTTGCGGGAACGGTTGGGGAAGGAGGGGAAGTGAAGGTGTTGAAGCTG
TTCAAGCCTATTTTTCGTGGTCTTTCTCTGGGCAGCATGTTGCAGGAGAA
CAAGCAGCGTTTCCCGCGACGTAGAAGCACCCTGACGACCGCAGGAGGAA
GAGGGGGGGGCGGGAAAGAGGAAGTAGACTGA

protein sequence of NO02G01400.1

>NO02G01400.1-protein ID=NO02G01400.1-protein|Name=NO02G01400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=694bp
MWFNQAGRNPKPDDDAYIAAFFEDLDGASPGDRGNCSTTLAASSSDAATQ
IRTFIEQEEQEQSPGSQTFPPISHDEFTSALLPITRLAIVTSGSVPTPLD
TDSVNYLDTLGSGNRAAACAEEFLRKGYHVIFLYRDGSLRPFSRVLAKRM
KKTHALTDQVQLNSKTGRVELVMDADEEARMTQVLMAYESVKLRLLEVSF
SDLFEYLYLLREACRAAAPLRHGALLFMAAGLTKMFIPRHELTRPSATFL
DQGKEALKLYPVPHIIRAARQSWCPQAFLVAFKLENDTLSLVEGAHRLLE
RHGVHLVVGNVVRERNRRVLIVTERDEIKLVSPHENELEPSMVKAVVRNH
KQFALEKEALKSSRSLLGLSAKFTMLRENKSVVDTDAYGRKQVPFKVGLR
IKADRHKADSPIYELKAVYSTKGGSARANLWQRVIEEEGEGEEEGGEGES
RKSSSDTATPTSSTAALANPVTPTTIAKGKGELLLTFSPAGNPETILSLW
GDTYKGWLEEEVKHLLAAASHIPLTTYLKILASPLTADFTDLADLLAQLR
TSIASAWKKREKTQFVQSYNNLMSLAFDRALMPLEGLMDAQELLDRRREM
EMEEEWGRGGSVSSCSTSSSLSVRFGRSPRGSIGVAGTVGEGGEVKVLKL
FKPIFRGLSLGSMLQENKQRFPRRRSTLTTAGGRGGGGKEEVD*

mRNA from alignment at chr2:417623..419814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G01400.1 ID=NO02G01400.1|Name=NO02G01400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at chr2:417623..419814+ (Nannochloropsis oceanica)
ATGTGGTTTAACCAGGCGGGAAGGAACCCCAAGCCGGATGATGATGCTTA
CATAGCCGCCTTTTTCGAGGACCTGGACGGGGCCAGCCCTGGAGACAGAG
GTAACTGCTCAACCACACTGGCGGCCTCATCCTCGGATGCCGCCACTCAA
ATCCGCACCTTTATCGAGCAGGAGGAGCAGGAGCAGTCACCAGGGTCTCA
AACCTTTCCCCCGATTTCCCACGATGAGTTCACCTCTGCCCTATTGCCCA
TCACGCGCCTGGCCATTGTCACGAGCGGTTCTGTTCCGACTCCCCTGGAC
ACGGATTCAGTCAATTACCTGGACACTTTGGGGTCGGGTAATCGTGCGGC
AGCATGTGCGGAAGAATTTTTGAGGAAAGGGTATCATGTCATATTCTTGT
ACCGAGACGGATCTTTACGCCCCTTTTCCCGAGTCCTGGCCAAGCGTATG
AAAAAAACACATGCGCTGACAGATCAAGTGCAATTAAATTCGAAGACGGG
CCGCGTGGAGCTGGTGATGGATGCGGATGAGGAAGCGCGCATGACCCAAG
TCCTCATGGCGTATGAGTCGGTCAAGCTGCGTCTACTCGAAGTGTCCTTT
TCTGATCTGTTTGAGTACTTATATCTTTTGCGAGAAGCCTGCCGCGCCGC
CGCGCCATTGCGCCATGGAGCCTTGCTCTTTATGGCTGCTGGATTGACGA
AAATGTTTATTCCTCGCCATGAGTTGACTCGACCTTCAGCTACTTTCCTT
GATCAGGGCAAGGAGGCCTTGAAGCTCTACCCCGTGCCACACATAATTCG
CGCCGCGCGGCAATCCTGGTGTCCTCAGGCTTTTCTCGTGGCCTTCAAAC
TGGAGAACGACACCCTAAGCCTGGTCGAAGGGGCGCATCGCTTGCTGGAG
AGGCATGGCGTGCATCTTGTGGTCGGCAACGTCGTCCGCGAGAGGAATCG
CCGCGTCCTAATCGTGACTGAGCGAGATGAAATTAAGCTGGTCTCTCCGC
ATGAAAACGAGTTAGAGCCTAGTATGGTCAAAGCCGTGGTGCGAAATCAC
AAGCAATTTGCCTTGGAGAAAGAAGCCCTCAAATCCAGTCGTTCCTTACT
CGGGCTCTCTGCGAAGTTTACCATGCTGAGGGAAAACAAGAGCGTTGTGG
ACACGGATGCATACGGGAGGAAGCAAGTTCCTTTTAAAGTCGGTTTGCGG
ATTAAGGCGGATCGACACAAGGCGGACTCGCCGATTTATGAGCTCAAGGC
CGTTTATTCCACCAAGGGAGGTTCTGCACGGGCCAATTTGTGGCAACGTG
TGATCGAGGAGGAGGGCGAGGGAGAGGAGGAGGGAGGGGAAGGAGAGAGC
AGAAAGAGTAGCAGCGACACGGCAACCCCTACTTCTTCTACTGCTGCTTT
AGCCAATCCCGTGACACCCACGACCATCGCCAAAGGAAAAGGAGAGCTTC
TTCTAACCTTCTCGCCCGCAGGTAAAATCCAAAGCCTGATTACAGCTTTT
CTCTTCCTTCTTCCTCTTCTTCACGACTGCATGCACCGCTCACCGTCCCC
CCCCCTCCCCTCCTCGCCCACACTCAAACAGGCAACCCCGAAACCATCCT
CAGCCTGTGGGGCGACACTTACAAAGGCTGGCTCGAAGAAGAAGTCAAAC
ACCTACTTGCTGCCGCCAGTCATATTCCTCTCACCACCTACTTGAAGATC
CTCGCCTCACCGTTGACTGCTGATTTCACCGACCTAGCGGACCTCCTGGC
ACAACTCCGCACCTCAATCGCGAGTGCGTGGAAGAAGCGGGAAAAGACGC
AGTTCGTCCAGAGTTATAACAATTTGATGAGTCTGGCATTCGATCGGGCC
TTGATGCCTTTGGAAGGATTGATGGACGCTCAGGAGTTGCTGGACCGACG
GAGGGAGATGGAGATGGAGGAGGAGTGGGGGAGAGGGGGGTCAGTGTCTT
CCTGCTCGACCTCCTCCTCCCTGTCAGTTCGATTTGGCCGTTCCCCTAGA
GGATCCATTGGTGTTGCGGGAACGGTTGGGGAAGGAGGGGAAGTGAAGGT
GTTGAAGCTGTTCAAGCCTATTTTTCGTGGTCTTTCTCTGGGCAGCATGT
TGCAGGAGAACAAGCAGCGTTTCCCGCGACGTAGAAGCACCCTGACGACC
GCAGGAGGAAGAGGGGGGGGCGGGAAAGAGGAAGTAGACTGA

Coding sequence (CDS) from alignment at chr2:417623..419814+

>NO02G01400.1 ID=NO02G01400.1|Name=NO02G01400.1|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at chr2:417623..419814+ (Nannochloropsis oceanica)
ATGTGGTTTAACCAGGCGGGAAGGAACCCCAAGCCGGATGATGATGCTTA
CATAGCCGCCTTTTTCGAGGACCTGGACGGGGCCAGCCCTGGAGACAGAG
GTAACTGCTCAACCACACTGGCGGCCTCATCCTCGGATGCCGCCACTCAA
ATCCGCACCTTTATCGAGCAGGAGGAGCAGGAGCAGTCACCAGGGTCTCA
AACCTTTCCCCCGATTTCCCACGATGAGTTCACCTCTGCCCTATTGCCCA
TCACGCGCCTGGCCATTGTCACGAGCGGTTCTGTTCCGACTCCCCTGGAC
ACGGATTCAGTCAATTACCTGGACACTTTGGGGTCGGGTAATCGTGCGGC
AGCATGTGCGGAAGAATTTTTGAGGAAAGGGTATCATGTCATATTCTTGT
ACCGAGACGGATCTTTACGCCCCTTTTCCCGAGTCCTGGCCAAGCGTATG
AAAAAAACACATGCGCTGACAGATCAAGTGCAATTAAATTCGAAGACGGG
CCGCGTGGAGCTGGTGATGGATGCGGATGAGGAAGCGCGCATGACCCAAG
TCCTCATGGCGTATGAGTCGGTCAAGCTGCGTCTACTCGAAGTGTCCTTT
TCTGATCTGTTTGAGTACTTATATCTTTTGCGAGAAGCCTGCCGCGCCGC
CGCGCCATTGCGCCATGGAGCCTTGCTCTTTATGGCTGCTGGATTGACGA
AAATGTTTATTCCTCGCCATGAGTTGACTCGACCTTCAGCTACTTTCCTT
GATCAGGGCAAGGAGGCCTTGAAGCTCTACCCCGTGCCACACATAATTCG
CGCCGCGCGGCAATCCTGGTGTCCTCAGGCTTTTCTCGTGGCCTTCAAAC
TGGAGAACGACACCCTAAGCCTGGTCGAAGGGGCGCATCGCTTGCTGGAG
AGGCATGGCGTGCATCTTGTGGTCGGCAACGTCGTCCGCGAGAGGAATCG
CCGCGTCCTAATCGTGACTGAGCGAGATGAAATTAAGCTGGTCTCTCCGC
ATGAAAACGAGTTAGAGCCTAGTATGGTCAAAGCCGTGGTGCGAAATCAC
AAGCAATTTGCCTTGGAGAAAGAAGCCCTCAAATCCAGTCGTTCCTTACT
CGGGCTCTCTGCGAAGTTTACCATGCTGAGGGAAAACAAGAGCGTTGTGG
ACACGGATGCATACGGGAGGAAGCAAGTTCCTTTTAAAGTCGGTTTGCGG
ATTAAGGCGGATCGACACAAGGCGGACTCGCCGATTTATGAGCTCAAGGC
CGTTTATTCCACCAAGGGAGGTTCTGCACGGGCCAATTTGTGGCAACGTG
TGATCGAGGAGGAGGGCGAGGGAGAGGAGGAGGGAGGGGAAGGAGAGAGC
AGAAAGAGTAGCAGCGACACGGCAACCCCTACTTCTTCTACTGCTGCTTT
AGCCAATCCCGTGACACCCACGACCATCGCCAAAGGAAAAGGAGAGCTTC
TTCTAACCTTCTCGCCCGCAGGCAACCCCGAAACCATCCTCAGCCTGTGG
GGCGACACTTACAAAGGCTGGCTCGAAGAAGAAGTCAAACACCTACTTGC
TGCCGCCAGTCATATTCCTCTCACCACCTACTTGAAGATCCTCGCCTCAC
CGTTGACTGCTGATTTCACCGACCTAGCGGACCTCCTGGCACAACTCCGC
ACCTCAATCGCGAGTGCGTGGAAGAAGCGGGAAAAGACGCAGTTCGTCCA
GAGTTATAACAATTTGATGAGTCTGGCATTCGATCGGGCCTTGATGCCTT
TGGAAGGATTGATGGACGCTCAGGAGTTGCTGGACCGACGGAGGGAGATG
GAGATGGAGGAGGAGTGGGGGAGAGGGGGGTCAGTGTCTTCCTGCTCGAC
CTCCTCCTCCCTGTCAGTTCGATTTGGCCGTTCCCCTAGAGGATCCATTG
GTGTTGCGGGAACGGTTGGGGAAGGAGGGGAAGTGAAGGTGTTGAAGCTG
TTCAAGCCTATTTTTCGTGGTCTTTCTCTGGGCAGCATGTTGCAGGAGAA
CAAGCAGCGTTTCCCGCGACGTAGAAGCACCCTGACGACCGCAGGAGGAA
GAGGGGGGGGCGGGAAAGAGGAAGTAGACTGA

Synonyms

Publications