NO02G01360.1, NO02G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G01360.1
Unique NameNO02G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length414
Alignment locationchr2:410642..411055 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:410642..411055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G01360.1 vs.
Match: EWM30510.1 (adp-ribosylation factor gtpase-activating protein agd7 [Nannochloropsis gaditana])

HSP 1 Score: 99.8 bits (247), Expect = 7.200e-18
Identity = 71/135 (52.59%), Postives = 84/135 (62.22%), Query Frame = 0 
Query:    5 SSRPLTGLATKADGWDDDEEDLFGGGNSSSNSGGWEATADHRAPPVAASTN-SECKAT-PPRPLPPPGVAATTVTSTTISSSSGGGTGAADDALDLDVDAFMTNVRVSKPTSSSSQQAPKAAAPKDEDFFSTFGV 138
            +++P T  A K DGWDDD+ED  G      N GGW+  A  RAP  AAS + S  + T PPRPLP  G A       + SSSS     + DDALDLDVDAF++NVR+S  TS+ S Q  KAA  KDEDFFSTFGV
Sbjct:  419 ATQPQTSGARKRDGWDDDDEDFLGAAAHDQN-GGWQ-EASRRAPTAAASMSISGLRNTPPPRPLPSGGSAPV----PSSSSSSAVAAASGDDALDLDVDAFVSNVRIS-DTSAKSAQGTKAALAKDEDFFSTFGV 546
The following BLAST results are available for this feature:
BLAST of NO02G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30510.17.200e-1852.59adp-ribosylation factor gtpase-activating protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G01360NO02G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G01360.1NO02G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G01360.1.cds1NO02G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G01360.1 ID=NO02G01360.1|Name=NO02G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp
ATGCGATCGGTTTCTTCCCGGCCGCTGACAGGATTGGCTACCAAAGCAGA
TGGGTGGGATGATGATGAGGAGGATTTATTTGGAGGGGGGAACAGCAGTA
GCAACAGCGGGGGTTGGGAAGCTACTGCAGATCATCGTGCTCCACCTGTC
GCTGCTTCTACCAATAGCGAGTGCAAAGCTACCCCGCCGAGGCCTTTGCC
GCCACCGGGGGTGGCGGCGACGACAGTAACGTCTACTACTATTTCTTCCT
CCTCAGGTGGTGGTACTGGTGCAGCGGATGATGCGCTGGATTTAGACGTG
GATGCATTTATGACCAATGTCCGTGTTAGCAAGCCCACGTCGTCGTCGTC
GCAGCAGGCGCCCAAGGCGGCCGCACCGAAGGATGAGGACTTCTTTTCCA
CGTTCGGTGTTTGA
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protein sequence of NO02G01360.1

>NO02G01360.1-protein ID=NO02G01360.1-protein|Name=NO02G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MRSVSSRPLTGLATKADGWDDDEEDLFGGGNSSSNSGGWEATADHRAPPV
AASTNSECKATPPRPLPPPGVAATTVTSTTISSSSGGGTGAADDALDLDV
DAFMTNVRVSKPTSSSSQQAPKAAAPKDEDFFSTFGV*
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mRNA from alignment at chr2:410642..411055+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G01360.1 ID=NO02G01360.1|Name=NO02G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=414bp|location=Sequence derived from alignment at chr2:410642..411055+ (Nannochloropsis oceanica)
ATGCGATCGGTTTCTTCCCGGCCGCTGACAGGATTGGCTACCAAAGCAGA
TGGGTGGGATGATGATGAGGAGGATTTATTTGGAGGGGGGAACAGCAGTA
GCAACAGCGGGGGTTGGGAAGCTACTGCAGATCATCGTGCTCCACCTGTC
GCTGCTTCTACCAATAGCGAGTGCAAAGCTACCCCGCCGAGGCCTTTGCC
GCCACCGGGGGTGGCGGCGACGACAGTAACGTCTACTACTATTTCTTCCT
CCTCAGGTGGTGGTACTGGTGCAGCGGATGATGCGCTGGATTTAGACGTG
GATGCATTTATGACCAATGTCCGTGTTAGCAAGCCCACGTCGTCGTCGTC
GCAGCAGGCGCCCAAGGCGGCCGCACCGAAGGATGAGGACTTCTTTTCCA
CGTTCGGTGTTTGA
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Coding sequence (CDS) from alignment at chr2:410642..411055+

>NO02G01360.1 ID=NO02G01360.1|Name=NO02G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at chr2:410642..411055+ (Nannochloropsis oceanica)
ATGCGATCGGTTTCTTCCCGGCCGCTGACAGGATTGGCTACCAAAGCAGA
TGGGTGGGATGATGATGAGGAGGATTTATTTGGAGGGGGGAACAGCAGTA
GCAACAGCGGGGGTTGGGAAGCTACTGCAGATCATCGTGCTCCACCTGTC
GCTGCTTCTACCAATAGCGAGTGCAAAGCTACCCCGCCGAGGCCTTTGCC
GCCACCGGGGGTGGCGGCGACGACAGTAACGTCTACTACTATTTCTTCCT
CCTCAGGTGGTGGTACTGGTGCAGCGGATGATGCGCTGGATTTAGACGTG
GATGCATTTATGACCAATGTCCGTGTTAGCAAGCCCACGTCGTCGTCGTC
GCAGCAGGCGCCCAAGGCGGCCGCACCGAAGGATGAGGACTTCTTTTCCA
CGTTCGGTGTTTGA
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Synonyms
Publications