|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:325342..328763 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01050.2 vs.
Match: XP_005855041.1 (periplasmic protease, partial [Nannochloropsis gaditana CCMP526]; EKU21317.1 periplasmic protease, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 246.9 bits (629), Expect = 1.600e-61 Identity = 171/294 (58.16%), Postives = 201/294 (68.37%), Query Frame = 0
Query: 290 LPAKQLSSLSLKFLLPLFILYFFRHLITFKATMQTLMIISILAEIAGRLGLLKDLKFPSPPFPSSLSPSSRGLSSTRGPPIFNFELMNGKFQVDKIRLSLLTGDMMGEALATATAARKAALTAAVMAATSGVSGKGGEGGGGGGGGGGGGGGEGGEGVVTEVRHTTVYG-DGENSSSSSSSGSSSGSRNAASCSQVSP-TPTSINESTNTSYPRKTTTSTVPVPPSIPPSPRPRAYVVSVKGDMFLSQGAYLTSLVSFLLEVARPQPGGDELILLLESGGGAAYEYGLASAQLE 582
+P KQL +L K +L +LY RHL TFK TMQ LMI+SILAEIAGRLGLLKDLK PSPPFPSSLS + R L+S RGPP+F FEL+NG++Q D+IRLSLLTGD G+AL A +RKAALTAAV AA G G GG +G + TE RHT YG G+ + SSS S+ A S SP T++N P T ST P++ P+PRPRAYVV++KGDMFLSQGAYLTS+VSFLLE AR PGGDEL+LLLESGGGAAYEYGL++AQLE
Sbjct: 1 MPRKQLFALGFKIVLVGGVLYSLRHLFTFKTTMQCLMIVSILAEIAGRLGLLKDLKLPSPPFPSSLS-TPRALASVRGPPLFQFELINGRYQADRIRLSLLTGDTTGQALTAAAVSRKAALTAAVAAAM------------GNGSSSSGGSNQGP--LWTEARHTQTYGMTGKEELREVGNASSSSSQPGAVSSAHSPLNRTAVN-------PNGTQGSTAAPLPAL-PTPRPRAYVVTLKGDMFLSQGAYLTSVVSFLLETARSGPGGDELVLLLESGGGAAYEYGLSAAQLE 271
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01050.2 ID=NO02G01050.2|Name=NO02G01050.2|organism=Nannochloropsis oceanica|type=mRNA|length=3245bp CCGCATTCTTTGCTTCGATTGCCTGTTCTATCTACACGCTTACGATACAA CCACACCCAACGCATACGAGCTCAGGGGAAGGGAGGAGCTTAACGTGCCG GTTCTCATCATGACAGACGCAGCAATAAAAACCATTTCTGATGAGCAGAG CAGGCAAAGAAGACGAAGAATAGCCTCCCTATTTCCGGGAAGGTCGCTAG TCCTCCTCCAGCTCCTCCTGCTGGGCTTCTTGGGACTATCGTCCGTGCCC CACGGCACTGCTGCACCTGCACCACTGGACTATGAGAATGAAAACTTGGA AACGTCATCCCGGGCGGGCATGAATGCAAACGCCACGACAACGAACGTGG CAACTGCTGTATCTCAACCCCCTCCAGTGGACGGGCTGCCTGTGACGCCC ACTTCCGAGGGAGGCCTCCAAGGAATGCTTCAAGTGAAAGCTCAGGAAGA AAAGTTGGATGCTGATCAGCTTGGGGCTGCGTCCACTGGTGCCCCGGCGG GGGGAGACGACGACGAGGAGGAGGAGGAGGAGGAAGAGGAGAGGGAGGAG GGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGAAAGAAGAAGAAGAAAT GGAGCAGAAAGACTGTAAGGAGGACGAGGAGGAAAAAGAAGAAAGTGATG AAAAAGAAAAAGATCGTGATGACGAAGAGGATGACGATGAAGAGGATGGC GAGGACGATGTGGAAAAAGGAGGAGGCGAAGAAGAAGAAGAAGAAGAAGA GGAAGAAGCTGACGAGAAGGTATTCGATCCTGACTTTAAGCGTCGTGGGT TCACACCTATCAGGAGCTATGGCGTTGGGCAAAAGCAGTCGCTCGTTGCT CGTCTCGTCATGAAAGCCAGCAAAGCCCTAAACATCACCTCCACCTCCAC CTCTTCTTCCTCCTCCAACACTACCACCTCTAACACCACCTCCCTCTCCA CCGCTCCTCTCCGAGCTCTACGCTCCCTTCCCGCCAAGCAACTCTCCTCC CTCTCCCTCAAGTTCCTCCTCCCCCTCTTCATACTCTACTTCTTCCGGCA CCTCATCACTTTCAAAGCCACCATGCAAACCCTCATGATCATCTCGATCC TCGCTGAAATCGCCGGCCGTCTCGGCCTACTCAAAGACCTGAAATTCCCC TCCCCCCCCTTCCCCTCCTCCCTTTCCCCCTCTTCACGGGGCCTCTCCTC CACCCGCGGTCCCCCTATTTTTAATTTCGAGTTAATGAACGGTAAATTTC AAGTAGATAAAATAAGATTGAGTCTCCTCACTGGTGATATGATGGGTGAA GCCTTGGCTACTGCAACGGCTGCGCGTAAGGCTGCCCTGACAGCAGCTGT GATGGCTGCGACTAGCGGTGTGAGTGGGAAAGGAGGAGAAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTG GTGACAGAGGTGAGGCATACGACGGTGTATGGTGACGGCGAGAACAGCAG CAGTAGCAGCAGCAGTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTT GCTCGCAAGTTTCTCCCACCCCTACCTCGATCAATGAGAGCACCAACACC TCCTATCCAAGAAAGACAACCACGTCAACTGTCCCCGTCCCTCCTTCCAT CCCTCCCTCCCCTCGTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACA TGTTCCTCTCTCAAGGTGCATATCTCACCTCCCTCGTTTCATTTTTATTG GAAGTGGCACGTCCTCAACCGGGAGGGGATGAATTAATATTATTGTTGGA GTCGGGAGGTGGTGCAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCG AGGTGAGAATGGGGGGGAGGGCGGGAGGAGAGGAGGGGAAAGGCGCTCGA TGGATACGTGTAATTGTGGGAGTCGGATGAATCAGGGGAGAGAGGGGGAA GTGAAGGCTAGAATGAGCGTTTGCGTATGGGCTTGTGTCGGCAGAGCGAG GTCTACCCACGTAATCCACTACCACATCGTCACCTCATTGATTTCTTCCC TCCCTCTCCTCTTCCTTCCTCCCTTTCCTCCCCCTTTCACCAACTACACC CACAGAGACTTAGGAGGGCAGGGGTGAAGCTGACGGTGTGCGTGGACAAA GTCGCTGCCAGTGGGGGATACATGATGGCGGTGGTGGCCGACACGTTGAT TGCCGCGCCCTTTGCGACAGTTGGCAGCATCGGGGCCACCACCAGTGTGC CTGTCCTCAACGTCGGGGGTTTCTTGAGGCGGGTGGGGATCCAAGCATAC ACAGTCAAGTCAGGTAAACACAAAGGCAGCGGAGGCATGTTTCTTGTGGG GGATGCCAAAGGCGACCAGCAAGCGCTCGCCAAACTCCAAGAAGACTTAA GCAAAGTGCACGAGGCGTTCAAGGCCCACATCGCAAGGTGGCGCGAAATG GTAGACGTGGAAGTGGTAGGCACAGGGGAGGTCTGGCAAGGTCGGGAGGC GAAGGCCCTGGGGTTGGTTGATGAGGTGATGACCAGCGAGGAGTATTTGG CGTGGAGACTTCTCACTCACGATGTGATCAAAGTGACGCCTGCTCCGGAG GGGAGGAGGTTTCCCGGCTTCTTGCTGCCTGGACGAGGGGGAGGAAGGGA TGGAGGAGGAGCGGGGATGCCTATTGGTGCGAGTTTGGGCTTGGTGAGGG AGTGCGTGAAGTGGGTTAAGAGGGGTAGGCGGAGGAGGAGGGTGGGGATG GGGGGGAAGGTGGCCGTGGAGGGGAGGGAGGAGGAGGAGGAGGAGGACGA GGAGGAGGAGGGGGCGAAAAGGGCTATAGTGGGGGATTTGGTGGGACGTG CGGTATCGTGGTTGATGGGGCGGCCGCAGCCTCCGATATTTTGTTAAGGG GAAAGGGCTGGGAAGGGATAGAGACTGAAATAAGGAGGATCGGAGGGAGA AGGGAGAAATGACACAAATACGCTTATGCATATATATCGTTTATAGGTGG AGGGAGCGCGGGAAAGTGCAAGGTTTGTTTTGGCTTGCTTTGAGCGAGCC ATATAATCAGAACATGGGCTTCTGGCTCCGCTTTTCCGAGTCGAGACCCG CCACGGAGCAAACTTAGAAAAAAAGCTTGTCAATAGATTTTCTGCTAATG ATTGGCGAAATACCTTAACATTTATTTATATGACATGAGGCCATTGAGGA ATGAATACCTAAAGAACAAAAAAGATAGTGCAAGTTACGGACATA back to topprotein sequence of NO02G01050.2 >NO02G01050.2-protein ID=NO02G01050.2-protein|Name=NO02G01050.2|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp MTDAAIKTISDEQSRQRRRRIASLFPGRSLVLLQLLLLGFLGLSSVPHGT AAPAPLDYENENLETSSRAGMNANATTTNVATAVSQPPPVDGLPVTPTSE GGLQGMLQVKAQEEKLDADQLGAASTGAPAGGDDDEEEEEEEEEREEGEE GEEEEEEEKEEEEMEQKDCKEDEEEKEESDEKEKDRDDEEDDDEEDGEDD VEKGGGEEEEEEEEEEADEKVFDPDFKRRGFTPIRSYGVGQKQSLVARLV MKASKALNITSTSTSSSSSNTTTSNTTSLSTAPLRALRSLPAKQLSSLSL KFLLPLFILYFFRHLITFKATMQTLMIISILAEIAGRLGLLKDLKFPSPP FPSSLSPSSRGLSSTRGPPIFNFELMNGKFQVDKIRLSLLTGDMMGEALA TATAARKAALTAAVMAATSGVSGKGGEGGGGGGGGGGGGGGEGGEGVVTE VRHTTVYGDGENSSSSSSSGSSSGSRNAASCSQVSPTPTSINESTNTSYP RKTTTSTVPVPPSIPPSPRPRAYVVSVKGDMFLSQGAYLTSLVSFLLEVA RPQPGGDELILLLESGGGAAYEYGLASAQLEVRMGGRAGGEEGKGARWIR VIVGVG* back to topmRNA from alignment at chr2:325342..328763+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01050.2 ID=NO02G01050.2|Name=NO02G01050.2|organism=Nannochloropsis oceanica|type=mRNA|length=3422bp|location=Sequence derived from alignment at chr2:325342..328763+ (Nannochloropsis oceanica) CCGCATTCTTTGCTTCGATTGCCTGTTCTATCTACACGCTTACGATACAA
CCACACCCAACGCATACGAGCTCAGGGGAAGGGAGGAGCTTAACGTGCCG
GTTCTCATCATGACAGACGCAGCAATAAAAACCATTTCTGATGAGCAGAG
CAGGCAAAGAAGACGAAGAATAGCCTCCCTATTTCCGGGAAGGTCGCTAG
TCCTCCTCCAGCTCCTCCTGCTGGGCTTCTTGGGACTATCGTCCGTGCCC
CACGGCACTGCTGCACCTGCACCACTGGACTATGAGAATGAAAACTTGGA
AACGTCATCCCGGGCGGGCATGAATGCAAACGCCACGACAACGAACGTGG
CAACTGCTGTATCTCAACCCCCTCCAGTGGACGGGCTGCCTGTGACGCCC
ACTTCCGAGGGAGGCCTCCAAGGAATGCTTCAAGTGAAAGCTCAGGAAGA
AAAGTTGGATGCTGATCAGCTTGGGGCTGCGTCCACTGGTGCCCCGGCGG
GGGGAGACGACGACGAGGAGGAGGAGGAGGAGGAAGAGGAGAGGGAGGAG
GGGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGAAAGAAGAAGAAGAAAT
GGAGCAGAAAGACTGTAAGGAGGACGAGGAGGAAAAAGAAGAAAGTGATG
AAAAAGAAAAAGATCGTGATGACGAAGAGGATGACGATGAAGAGGATGGC
GAGGACGATGTGGAAAAAGGAGGAGGCGAAGAAGAAGAAGAAGAAGAAGA
GGAAGAAGCTGACGAGAAGGTATTCGATCCTGACTTTAAGCGTCGTGGGT
TCACACCTATCAGGAGCTATGGCGTTGGGCAAAAGCAGTCGCTCGTTGCT
CGTCTCGTCATGAAAGCCAGCAAAGCCCTAAACATCACCTCCACCTCCAC
CTCTTCTTCCTCCTCCAACACTACCACCTCTAACACCACCTCCCTCTCCA
CCGCTCCTCTCCGAGCTCTACGCTCCCTTCCCGCCAAGCAACTCTCCTCC
CTCTCCCTCAAGTTCCTCCTCCCCCTCTTCATACTCTACTTCTTCCGGCA
CCTCATCACTTTCAAAGCCACCATGCAAACCCTCATGATCATCTCGATCC
TCGCTGAAATCGCCGGCCGTCTCGGCCTACTCAAAGACCTGAAATTCCCC
TCCCCCCCCTTCCCCTCCTCCCTTTCCCCCTCTTCACGGGGCCTCTCCTC
CACCCGCGGTCCCCCTATTTTTAATTTCGAGTTAATGAACGGTAAATTTC
AAGTAGATAAAATAAGATTGAGTCTCCTCACTGGTGATATGATGGGTGAA
GCCTTGGCTACTGCAACGGCTGCGCGTAAGGCTGCCCTGACAGCAGCTGT
GATGGCTGCGACTAGCGGTGTGAGTGGGAAAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTG
GTGACAGAGGTGAGGCATACGACGGTGTATGGTGACGGCGAGAACAGCAG
CAGTAGCAGCAGCAGTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTT
GCTCGCAAGTTTCTCCCACCCCTACCTCGATCAATGAGAGCACCAACACC
TCCTATCCAAGAAAGACAACCACGTCAACTGTCCCCGTCCCTCCTTCCAT
CCCTCCCTCCCCTCGTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACA
TGTTCCTCTCTCAAGGTGCATATCTCACCTCCCTCGTTTCATTTTTATTG
GAAGTGGCACGTCCTCAACCGGGAGGGGATGAATTAATATTATTGTTGGA
GTCGGGAGGTGGTGCAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCG
AGGTGAGAATGGGGGGGAGGGCGGGAGGAGAGGAGGGGAAAGGCGCTCGA
TGGATACGTGTAATTGTGGGAGTCGGATGAATCAGGGGAGAGAGGGGGAA
GTGAAGGCTAGAATGAGCGTTTGCGTATGGGCTTGTGTCGGCAGAGCGAG
GTCTACCCACGTAATCCACTACCACATCGTCACCTCATTGATTTCTTCCC
TCCCTCTCCTCTTCCTTCCTCCCTTTCCTCCCCCTTTCACCAACTACACC
CACAGAGACTTAGGAGGGCAGGGGTGAAGCTGACGGTGTGCGTGGACAAA
GTCGCTGCCAGTGGGGGATACATGATGGCGGTGGTGGCCGACACGTTGAT
TGCCGCGCCCTTTGCGACAGTTGGCAGCATCGGGGCCACCACCAGTGTGC
CTGTCCTCAACGTCGGGGGTTTCTTGAGGCGGGTGGGGATCCAAGCATAC
ACAGTCAAGTCAGGTAGACAATACCCACTTCCTACTTTCTCCCTTCCATC
CTTCTTCATCCCCTCCCCATCTTTCCCATATTCTTACTTTAGAAGTGGCA
ACGTGCATTTTTGGAGGTTGAGTGGACATGTCCTTCTCCTCTCTGAGCCC
CCCTCCTTCCCTCCCTCCCCCTCTCCCTCCCCTCTTTCAGGTAAACACAA
AGGCAGCGGAGGCATGTTTCTTGTGGGGGATGCCAAAGGCGACCAGCAAG
CGCTCGCCAAACTCCAAGAAGACTTAAGCAAAGTGCACGAGGCGTTCAAG
GCCCACATCGCAAGGTGGCGCGAAATGGTAGACGTGGAAGTGGTAGGCAC
AGGGGAGGTCTGGCAAGGTCGGGAGGCGAAGGCCCTGGGGTTGGTTGATG
AGGTGATGACCAGCGAGGAGTATTTGGCGTGGAGACTTCTCACTCACGAT
GTGATCAAAGTGACGCCTGCTCCGGAGGGGAGGAGGTTTCCCGGCTTCTT
GCTGCCTGGACGAGGGGGAGGAAGGGATGGAGGAGGAGCGGGGATGCCTA
TTGGTGCGAGTTTGGGCTTGGTGAGGGAGTGCGTGAAGTGGGTTAAGAGG
GGTAGGCGGAGGAGGAGGGTGGGGATGGGGGGGAAGGTGGCCGTGGAGGG
GAGGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGGGGCGAAAAGGG
CTATAGTGGGGGATTTGGTGGGACGTGCGGTATCGTGGTTGATGGGGCGG
CCGCAGCCTCCGATATTTTGTTAAGGGGAAAGGGCTGGGAAGGGATAGAG
ACTGAAATAAGGAGGATCGGAGGGAGAAGGGAGAAATGACACAAATACGC
TTATGCATATATATCGTTTATAGGTGGAGGGAGCGCGGGAAAGTGCAAGG
TTTGTTTTGGCTTGCTTTGAGCGAGCCATATAATCAGAACATGGGCTTCT
GGCTCCGCTTTTCCGAGTCGAGACCCGCCACGGAGCAAACTTAGAAAAAA
AGCTTGTCAATAGATTTTCTGCTAATGATTGGCGAAATACCTTAACATTT
ATTTATATGACATGAGGCCATTGAGGAATGAATACCTAAAGAACAAAAAA
GATAGTGCAAGTTACGGACATA back to topCoding sequence (CDS) from alignment at chr2:325342..328763+ >NO02G01050.2 ID=NO02G01050.2|Name=NO02G01050.2|organism=Nannochloropsis oceanica|type=CDS|length=1821bp|location=Sequence derived from alignment at chr2:325342..328763+ (Nannochloropsis oceanica) ATGACAGACGCAGCAATAAAAACCATTTCTGATGAGCAGAGCAGGCAAAG AAGACGAAGAATAGCCTCCCTATTTCCGGGAAGGTCGCTAGTCCTCCTCC AGCTCCTCCTGCTGGGCTTCTTGGGACTATCGTCCGTGCCCCACGGCACT GCTGCACCTGCACCACTGGACTATGAGAATGAAAACTTGGAAACGTCATC CCGGGCGGGCATGAATGCAAACGCCACGACAACGAACGTGGCAACTGCTG TATCTCAACCCCCTCCAGTGGACGGGCTGCCTGTGACGCCCACTTCCGAG GGAGGCCTCCAAGGAATGCTTCAAGTGAAAGCTCAGGAAGAAAAGTTGGA TGCTGATCAGCTTGGGGCTGCGTCCACTGGTGCCCCGGCGGGGGGAGACG ACGACGAGGAGGAGGAGGAGGAGGAAGAGGAGAGGGAGGAGGGGGAGGAG GGGGAGGAGGAGGAGGAGGAGGAGAAAGAAGAAGAAGAAATGGAGCAGAA AGACTGTAAGGAGGACGAGGAGGAAAAAGAAGAAAGTGATGAAAAAGAAA AAGATCGTGATGACGAAGAGGATGACGATGAAGAGGATGGCGAGGACGAT GTGGAAAAAGGAGGAGGCGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGC TGACGAGAAGGTATTCGATCCTGACTTTAAGCGTCGTGGGTTCACACCTA TCAGGAGCTATGGCGTTGGGCAAAAGCAGTCGCTCGTTGCTCGTCTCGTC ATGAAAGCCAGCAAAGCCCTAAACATCACCTCCACCTCCACCTCTTCTTC CTCCTCCAACACTACCACCTCTAACACCACCTCCCTCTCCACCGCTCCTC TCCGAGCTCTACGCTCCCTTCCCGCCAAGCAACTCTCCTCCCTCTCCCTC AAGTTCCTCCTCCCCCTCTTCATACTCTACTTCTTCCGGCACCTCATCAC TTTCAAAGCCACCATGCAAACCCTCATGATCATCTCGATCCTCGCTGAAA TCGCCGGCCGTCTCGGCCTACTCAAAGACCTGAAATTCCCCTCCCCCCCC TTCCCCTCCTCCCTTTCCCCCTCTTCACGGGGCCTCTCCTCCACCCGCGG TCCCCCTATTTTTAATTTCGAGTTAATGAACGGTAAATTTCAAGTAGATA AAATAAGATTGAGTCTCCTCACTGGTGATATGATGGGTGAAGCCTTGGCT ACTGCAACGGCTGCGCGTAAGGCTGCCCTGACAGCAGCTGTGATGGCTGC GACTAGCGGTGTGAGTGGGAAAGGAGGAGAAGGAGGAGGAGGAGGAGGAG GAGGAGGAGGAGGAGGAGGGGGAGAAGGAGGAGAAGGCGTGGTGACAGAG GTGAGGCATACGACGGTGTATGGTGACGGCGAGAACAGCAGCAGTAGCAG CAGCAGTGGCAGCAGCAGTGGCAGCAGGAATGCAGCGTCTTGCTCGCAAG TTTCTCCCACCCCTACCTCGATCAATGAGAGCACCAACACCTCCTATCCA AGAAAGACAACCACGTCAACTGTCCCCGTCCCTCCTTCCATCCCTCCCTC CCCTCGTCCTCGCGCATACGTCGTGTCCGTCAAAGGCGACATGTTCCTCT CTCAAGGTGCATATCTCACCTCCCTCGTTTCATTTTTATTGGAAGTGGCA CGTCCTCAACCGGGAGGGGATGAATTAATATTATTGTTGGAGTCGGGAGG TGGTGCAGCGTATGAGTACGGCTTGGCCTCGGCTCAACTCGAGGTGAGAA TGGGGGGGAGGGCGGGAGGAGAGGAGGGGAAAGGCGCTCGATGGATACGT GTAATTGTGGGAGTCGGATGA back to top
|