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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:299454..301955 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00950.1 vs.
Match: EWM30581.1 (phosphoribosylaminoimidazole carboxylase [Nannochloropsis gaditana]) HSP 1 Score: 916.4 bits (2367), Expect = 4.300e-263 Identity = 469/546 (85.90%), Postives = 499/546 (91.39%), Query Frame = 0
Query: 1 MDGRRVGVLGGGQLGRMMAEAGHRLGIQLNILDPAGKDSPAGQVAGTSINGSFRDEDKVLELAGISDLLTVEIEHINCDALDAAIAQGTPVQPLPQTLRVIQDKYAQKVYLAARGIPLPEFCDVPNLEAAYAAGREFGYPLMLKAKRLAYDGKGNAVAKTKEDVAGAFEQLGGGDVYAEKWAPFVKELAVMVVRSASEVRPYPVVETVQKDNICHTTITPAQLSATASDKALAVASQAIAALEGAGIFGVELFLMPDDTILLNEIAPRPHNSGHYTIEACETDQFENHLRAVLDLPLGGTALKVGAAVMLNILGEGNTQETKKMMQKALAIPGAGIHWYGKGEAKKGRKMAHITFTGHSLFEIKARTAVYGAFLGSLSLAPSVGIIMGSDSDLPCMKDAADILETFAVPYELTIVSAHRTPTRMYTYAQEAAQRGLQVIIAGAGGAAHLPGMVAALTPLPVIGVPVKTAALSGVDSLYSICQMPKGIPVATVAIGNAANAGLLAVRILGSARPELLNKMEVWLRGQEGQVLAKAEKLEKGGWREYL 547
MD RRVGVLGGGQLGRMMAEAGHRLGI LNILDPAGK SPAGQVA TSI GSFRDE+KVLELA ISDLLTVEIEH+NC+ALDAAIA GTPVQPLPQT+RVIQDK+ QKVYL ARG+PLPEFCDVP LEAAY AGR FGYPLMLKAKRLAYDGKGNA+AKTK+DVA AFEQLGG DVYAEKWAPF KELAVMVVRSA+EVRPYPVVETVQKDNICHTTITPAQ+SA AS KA+ VAS+AIAALEG GIFGVELFLMPDD+ILLNEIAPRPHNSGHYT+EACETDQFENHLRA+L LPLGGTALKVGAAVMLNILGEG+T ETK MM+KALAIPGAGIHWYGKGEAKKGRKMAHITFTG SLFEI+AR + YG L S SLA +VGIIMGSDSDLP MKDAA +LETF V YELTIVSAHRTP RMY YA+ A QRGL+VIIAGAGGAAHLPGMVAALTPLPVIGVPVK++ LSGVDSLYSICQMPKG+PVATVAIGNAANAGLLAVRILGS ++L KME WLR QEGQVL KAE+LEK GW+EYL
Sbjct: 62 MDERRVGVLGGGQLGRMMAEAGHRLGIHLNILDPAGKASPAGQVASTSIEGSFRDEEKVLELASISDLLTVEIEHVNCEALDAAIAAGTPVQPLPQTIRVIQDKFQQKVYLQARGVPLPEFCDVPTLEAAYEAGRIFGYPLMLKAKRLAYDGKGNAIAKTKDDVAAAFEQLGGRDVYAEKWAPFRKELAVMVVRSATEVRPYPVVETVQKDNICHTTITPAQISAAASKKAMEVASEAIAALEGTGIFGVELFLMPDDSILLNEIAPRPHNSGHYTMEACETDQFENHLRAILGLPLGGTALKVGAAVMLNILGEGSTAETKMMMEKALAIPGAGIHWYGKGEAKKGRKMAHITFTGPSLFEIQARASAYG-LLASFSLASAVGIIMGSDSDLPTMKDAAGVLETFGVNYELTIVSAHRTPGRMYEYARNAVQRGLRVIIAGAGGAAHLPGMVAALTPLPVIGVPVKSSTLSGVDSLYSICQMPKGVPVATVAIGNAANAGLLAVRILGSGERDILEKMEGWLREQEGQVLVKAERLEKNGWKEYL 606
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00950.1 ID=NO02G00950.1|Name=NO02G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp
AATCAGATCTTGCAAAAAGCAGAGTGACATTTGGCGACAAATGTGGTCAC
AGCAGCCACTACGGTATTTCGCCTTGCCACATCAGCCATGACCACGCATG
CATTGATCGCTTGAAATAGACCAAAGCCGGAAGCCAACAGTGTAATCCGC
CCCCAGCTCAACGGCCGCCGGCATCTTCGGCCGCTTGACCTTGAAAACTA
CCGCTTGCTTCCGGTGTTGATAGGGAGGGATGGCAATTGTGATCGAGAGG
ATTTTACCACATAAAGATATGTCACCTCATAACGTTGCTGCTATGCTATC
TCAAAATATCATCACATCCCTCCCGCCTGCCCTCTCTCATTCCACTAAAT
CCCTATTCCTTTCACTACAACATAGAAAGAGGCCTAAGTAAAGATAAGAT
GGACGGGCGTCGGGTAGGGGTCCTGGGTGGTGGGCAACTGGGCCGCATGA
TGGCCGAGGCGGGGCATCGGCTAGGAATTCAGCTCAACATCCTCGATCCT
GCCGGCAAGGACTCCCCCGCCGGCCAAGTGGCAGGCACAAGCATCAATGG
CAGCTTCCGGGACGAGGACAAGGTCTTAGAGCTCGCTGGTATATCCGATC
TCCTCACCGTTGAAATCGAGCACATCAACTGCGATGCGCTAGATGCTGCA
ATCGCCCAGGGCACCCCAGTTCAACCCTTGCCTCAAACTTTAAGGGTCAT
TCAGGATAAGTACGCACAGAAGGTTTATTTGGCGGCGCGTGGGATTCCGT
TGCCGGAATTTTGTGATGTGCCCAATTTGGAGGCTGCTTATGCGGCGGGA
CGGGAGTTTGGATATCCTCTGATGTTGAAAGCGAAGCGACTAGCATATGA
TGGGAAGGGGAATGCGGTCGCCAAGACGAAAGAGGACGTCGCTGGGGCGT
TCGAGCAGTTGGGGGGCGGTGATGTGTACGCTGAGAAATGGGCGCCATTT
GTGAAGGAACTGGCCGTGATGGTCGTGAGATCGGCGTCGGAAGTCCGACC
GTACCCTGTTGTGGAGACGGTGCAAAAAGATAATATCTGCCATACCACCA
TCACGCCTGCCCAGCTCTCTGCCACAGCGAGCGACAAGGCTTTGGCGGTG
GCCTCGCAGGCAATTGCGGCGTTAGAGGGGGCAGGTATCTTTGGGGTGGA
GTTGTTTCTGATGCCTGACGACACGATTTTGTTGAATGAGATCGCCCCAA
GGCCGCATAATTCTGGCCATTACACAATAGAGGCCTGTGAAACCGATCAA
TTTGAAAACCACTTGCGGGCCGTTCTGGACTTGCCGCTTGGGGGTACGGC
ATTGAAGGTGGGGGCGGCGGTGATGTTGAATATATTGGGGGAGGGCAACA
CGCAGGAGACGAAGAAGATGATGCAAAAAGCCCTGGCGATTCCTGGAGCG
GGGATACATTGGTATGGAAAGGGGGAGGCGAAGAAGGGGAGGAAGATGGC
ACATATCACCTTCACAGGACACTCTCTTTTTGAAATCAAGGCCCGTACGG
CAGTATATGGGGCATTCCTTGGTTCCTTGTCACTCGCACCGTCGGTGGGG
ATAATCATGGGGTCTGATTCGGACCTTCCCTGCATGAAGGACGCGGCTGA
CATCCTGGAGACCTTTGCAGTGCCGTACGAGCTTACCATCGTTTCGGCCC
ATCGTACGCCTACCCGGATGTACACATATGCCCAAGAAGCCGCACAACGA
GGGCTGCAAGTCATAATTGCCGGGGCAGGGGGCGCCGCGCATTTACCTGG
GATGGTGGCCGCTTTGACCCCTCTCCCCGTCATTGGTGTTCCTGTCAAGA
CAGCGGCGCTGTCGGGCGTGGACTCGCTGTATTCGATTTGTCAGATGCCG
AAAGGAATCCCGGTGGCGACGGTCGCAATTGGAAACGCTGCGAATGCTGG
GTTGTTGGCTGTGAGGATTTTGGGGAGTGCCAGGCCGGAATTGTTGAACA
AGATGGAGGTCTGGTTGAGAGGGCAGGAAGGGCAGGTGCTTGCGAAGGCG
GAAAAGCTGGAAAAAGGTGGGTGGCGGGAGTATTTACATGGAGCCAAGTA
GGGGGGAAAAGAGGGAGGGATAGGGATGGTGATGATTTTGATGGTGGTCA
TGATGAAGATGATGAGGATGTGCGTACTCGAAAGGGAAAATTTTGCGGAC
GCGATATTGATTCATTTAGATATTTTATGATTTGAACGAAAATTATACTA
TGTTGGAAGAGGACGAAGATCAGGAAGACAGTCGGACAAGGCAAATGCTT
CCTTCGCCGAAAGAGCACACCAAAGAAGAGAAAATAAGAAAGCAAAATAG
CGGAAAAGGAAAAACGTAGGCCT back to topprotein sequence of NO02G00950.1 >NO02G00950.1-protein ID=NO02G00950.1-protein|Name=NO02G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MDGRRVGVLGGGQLGRMMAEAGHRLGIQLNILDPAGKDSPAGQVAGTSIN
GSFRDEDKVLELAGISDLLTVEIEHINCDALDAAIAQGTPVQPLPQTLRV
IQDKYAQKVYLAARGIPLPEFCDVPNLEAAYAAGREFGYPLMLKAKRLAY
DGKGNAVAKTKEDVAGAFEQLGGGDVYAEKWAPFVKELAVMVVRSASEVR
PYPVVETVQKDNICHTTITPAQLSATASDKALAVASQAIAALEGAGIFGV
ELFLMPDDTILLNEIAPRPHNSGHYTIEACETDQFENHLRAVLDLPLGGT
ALKVGAAVMLNILGEGNTQETKKMMQKALAIPGAGIHWYGKGEAKKGRKM
AHITFTGHSLFEIKARTAVYGAFLGSLSLAPSVGIIMGSDSDLPCMKDAA
DILETFAVPYELTIVSAHRTPTRMYTYAQEAAQRGLQVIIAGAGGAAHLP
GMVAALTPLPVIGVPVKTAALSGVDSLYSICQMPKGIPVATVAIGNAANA
GLLAVRILGSARPELLNKMEVWLRGQEGQVLAKAEKLEKGGWREYLHGAK
* back to topmRNA from alignment at chr2:299454..301955- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00950.1 ID=NO02G00950.1|Name=NO02G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2502bp|location=Sequence derived from alignment at chr2:299454..301955- (Nannochloropsis oceanica)
AATCAGATCTTGCAAAAAGCAGAGTGACATTTGGCGACAAATGTGGTCAC
AGCAGCCACTACGGTATTTCGCCTTGCCACATCAGCCATGACCACGCATG
CATTGATCGCTTGAAATAGACCAAAGCCGGAAGCCAACAGTGTAATCCGC
CCCCAGCTCAACGGCCGCCGGCATCTTCGGCCGCTTGACCTTGAAAACTA
CCGCTTGCTTCCGGTGTTGATAGGGAGGGATGGCAATTGTGATCGAGAGG
ATTTTACCACATAAAGATATGTCACCTCATAACGTTGCTGCTATGCTATC
TCAAAATATCATCACATCCCTCCCGCCTGCCCTCTCTCATTCCACTAAAT
CCCTATTCCTTTCACTACAACATAGAAAGAGGCCTAAGTAAAGATAAGAT
GGACGGGCGTCGGGTAGGGGTCCTGGGTGGTGGGCAACTGGGCCGCATGA
TGGCCGAGGCGGGGCATCGGCTAGGAATTCAGCTCAACATCCTCGATCCT
GGTACGTACGGGGGGGAGGTGGACAAGATGGGGAAAAAGACTTGATCGCA
AAGTCTCTCCTTTCTCTTTTAATTTGAGCTCTATCCTGAGGCCCCATGTT
GTTAAGTCCCATTTTCCGCCCAACAAGCCCTTTCACCCCCTCCCCTCCCG
TTTATTTTTGGACCCATCATCACTTCACAGCCGGCAAGGACTCCCCCGCC
GGCCAAGTGGCAGGCACAAGCATCAATGGCAGCTTCCGGGACGAGGACAA
GGTCTTAGAGCTCGCTGGTATATCCGATCTCCTCACCGTTGAAATCGAGC
ACATCAACTGCGATGCGCTAGATGCTGCAATCGCCCAGGGCACCCCAGTT
CAACCCTTGCCTCAAACTTTAAGGGTCATTCAGGATAAGTACGCACAGAA
GGTTTATTTGGCGGCGCGTGGGATTCCGTTGCCGGAATTTTGTGATGTGC
CCAATTTGGAGGCTGCTTATGCGGCGGGACGGGAGTTTGGATATCCTCTG
ATGTTGAAAGCGAAGCGACTAGCATATGATGGGAAGGGGAATGCGGTCGC
CAAGACGAAAGAGGACGTCGCTGGGGCGTTCGAGCAGTTGGGGGGCGGTG
ATGTGTACGCTGAGAAATGGGCGCCATTTGTGAAGGAACTGGCCGTGATG
GTCGTGAGATCGGCGTCGGAAGTCCGACCGTACCCTGTTGTGGAGACGGT
GCAAAAAGATAATATCTGCCATACCACCATCACGCCTGCCCAGCTCTCTG
CCACAGCGAGCGACAAGGCTTTGGCGGTGGCCTCGCAGGCAATTGCGGCG
TTAGAGGGGGCAGGTATCTTTGGGGTGGAGTTGTTTCTGATGCCTGACGA
CACGATTTTGTTGAATGAGATCGCCCCAAGGCCGCATAATTCTGGCCATT
ACACAATAGAGGCCTGTGAAACCGATCAATTTGAAAACCACTTGCGGGCC
GTTCTGGACTTGCCGCTTGGGGGTACGGCATTGAAGGTGGGGGCGGCGGT
GATGTTGAATATATTGGGGGAGGGCAACACGCAGGAGACGAAGAAGATGA
TGCAAAAAGCCCTGGCGATTCCTGGAGCGGGGATACATTGGTATGGAAAG
GGGGAGGCGAAGAAGGGGAGGAAGATGGCACATATCACCTTCACAGGACA
CTCTCTTTTTGAAATCAAGGCCCGTACGGCAGTATATGGGGCATTCCTTG
GTTCCTTGTCACTCGCACCGTCGGTGGGGATAATCATGGGGTCTGATTCG
GACCTTCCCTGCATGAAGGACGCGGCTGACATCCTGGAGACCTTTGCAGT
GCCGTACGAGCTTACCATCGTTTCGGCCCATCGTACGCCTACCCGGATGT
ACACATATGCCCAAGAAGCCGCACAACGAGGGCTGCAAGTCATAATTGCC
GGGGCAGGGGGCGCCGCGCATTTACCTGGGATGGTGGCCGCTTTGACCCC
TCTCCCCGTCATTGGTGTTCCTGTCAAGACAGCGGCGCTGTCGGGCGTGG
ACTCGCTGTATTCGATTTGTCAGATGCCGAAAGGAATCCCGGTGGCGACG
GTCGCAATTGGAAACGCTGCGAATGCTGGGTTGTTGGCTGTGAGGATTTT
GGGGAGTGCCAGGCCGGAATTGTTGAACAAGATGGAGGTCTGGTTGAGAG
GGCAGGAAGGGCAGGTGCTTGCGAAGGCGGAAAAGCTGGAAAAAGGTGGG
TGGCGGGAGTATTTACATGGAGCCAAGTAGGGGGGAAAAGAGGGAGGGAT
AGGGATGGTGATGATTTTGATGGTGGTCATGATGAAGATGATGAGGATGT
GCGTACTCGAAAGGGAAAATTTTGCGGACGCGATATTGATTCATTTAGAT
ATTTTATGATTTGAACGAAAATTATACTATGTTGGAAGAGGACGAAGATC
AGGAAGACAGTCGGACAAGGCAAATGCTTCCTTCGCCGAAAGAGCACACC
AAAGAAGAGAAAATAAGAAAGCAAAATAGCGGAAAAGGAAAAACGTAGGC
CT back to topCoding sequence (CDS) from alignment at chr2:299454..301955- >NO02G00950.1 ID=NO02G00950.1|Name=NO02G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at chr2:299454..301955- (Nannochloropsis oceanica)
ATGGACGGGCGTCGGGTAGGGGTCCTGGGTGGTGGGCAACTGGGCCGCAT
GATGGCCGAGGCGGGGCATCGGCTAGGAATTCAGCTCAACATCCTCGATC
CTGCCGGCAAGGACTCCCCCGCCGGCCAAGTGGCAGGCACAAGCATCAAT
GGCAGCTTCCGGGACGAGGACAAGGTCTTAGAGCTCGCTGGTATATCCGA
TCTCCTCACCGTTGAAATCGAGCACATCAACTGCGATGCGCTAGATGCTG
CAATCGCCCAGGGCACCCCAGTTCAACCCTTGCCTCAAACTTTAAGGGTC
ATTCAGGATAAGTACGCACAGAAGGTTTATTTGGCGGCGCGTGGGATTCC
GTTGCCGGAATTTTGTGATGTGCCCAATTTGGAGGCTGCTTATGCGGCGG
GACGGGAGTTTGGATATCCTCTGATGTTGAAAGCGAAGCGACTAGCATAT
GATGGGAAGGGGAATGCGGTCGCCAAGACGAAAGAGGACGTCGCTGGGGC
GTTCGAGCAGTTGGGGGGCGGTGATGTGTACGCTGAGAAATGGGCGCCAT
TTGTGAAGGAACTGGCCGTGATGGTCGTGAGATCGGCGTCGGAAGTCCGA
CCGTACCCTGTTGTGGAGACGGTGCAAAAAGATAATATCTGCCATACCAC
CATCACGCCTGCCCAGCTCTCTGCCACAGCGAGCGACAAGGCTTTGGCGG
TGGCCTCGCAGGCAATTGCGGCGTTAGAGGGGGCAGGTATCTTTGGGGTG
GAGTTGTTTCTGATGCCTGACGACACGATTTTGTTGAATGAGATCGCCCC
AAGGCCGCATAATTCTGGCCATTACACAATAGAGGCCTGTGAAACCGATC
AATTTGAAAACCACTTGCGGGCCGTTCTGGACTTGCCGCTTGGGGGTACG
GCATTGAAGGTGGGGGCGGCGGTGATGTTGAATATATTGGGGGAGGGCAA
CACGCAGGAGACGAAGAAGATGATGCAAAAAGCCCTGGCGATTCCTGGAG
CGGGGATACATTGGTATGGAAAGGGGGAGGCGAAGAAGGGGAGGAAGATG
GCACATATCACCTTCACAGGACACTCTCTTTTTGAAATCAAGGCCCGTAC
GGCAGTATATGGGGCATTCCTTGGTTCCTTGTCACTCGCACCGTCGGTGG
GGATAATCATGGGGTCTGATTCGGACCTTCCCTGCATGAAGGACGCGGCT
GACATCCTGGAGACCTTTGCAGTGCCGTACGAGCTTACCATCGTTTCGGC
CCATCGTACGCCTACCCGGATGTACACATATGCCCAAGAAGCCGCACAAC
GAGGGCTGCAAGTCATAATTGCCGGGGCAGGGGGCGCCGCGCATTTACCT
GGGATGGTGGCCGCTTTGACCCCTCTCCCCGTCATTGGTGTTCCTGTCAA
GACAGCGGCGCTGTCGGGCGTGGACTCGCTGTATTCGATTTGTCAGATGC
CGAAAGGAATCCCGGTGGCGACGGTCGCAATTGGAAACGCTGCGAATGCT
GGGTTGTTGGCTGTGAGGATTTTGGGGAGTGCCAGGCCGGAATTGTTGAA
CAAGATGGAGGTCTGGTTGAGAGGGCAGGAAGGGCAGGTGCTTGCGAAGG
CGGAAAAGCTGGAAAAAGGTGGGTGGCGGGAGTATTTACATGGAGCCAAG
TAG back to top
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