NO02G00360.1, NO02G00360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00360.1
Unique NameNO02G00360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr2:129033..130448 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:129033..130448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00360.1 vs.
Match: CBN75167.1 (similar to coiled-coil domain containing 111 [Ectocarpus siliculosus])

HSP 1 Score: 127.1 bits (318), Expect = 1.400e-25
Identity = 108/354 (30.51%), Postives = 145/354 (40.96%), Query Frame = 0 
Query:  178 ILAVDTSVYTKNRAFRILYSQKFGKTATFQVTSESAQT-------------FLPPSSCPLCPPSPTPPQNP-------HDWILASLVVPYLPCGHLPSPAFITLPEASTQMFVHKFGTLESV---------------------------HSNSSIYSGGNTSSSSGYRSLSCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYS------------YSSSNSSSNCGGTCAATGTADGTETTMESTTPPLPLLPTSILTYQVGRNRWCHRIGRAHKSNHTMVSVDLRRGCLYQRCHDPECR--SYKGPLHWLPLALVPSAETLESIELDAALADACAREPGRW 471
            +L  D SVYT+NR FR+L S KFGK A  +V + + +T             F   SS  L  P     Q         HD    SLVVP  P    P+  F+T+   + Q    +FG+                               H  SS   G  +S   G+R  S         +G  PSP PA+D++++   +  GG  G +R W Y+            +   N + N  G    TG      +    + P  P      LT+QV  NRWC  IGRAHKSNH  +  DL RG + Q CHD ECR   Y+     LP+ + P  + LE+ EL+  LA A    P  W
Sbjct:  930 VLFADVSVYTRNRCFRLLGSSKFGKAACLRVAATNKRTLDHMVWRGRGGGTFARTSSSSLLSPREQKQQLRDVARTLLHD----SLVVPVTPRSS-PAELFLTVGGGTGQHRYSRFGSCRKQTGDCSSSQQRQQHGWSTNGTISAERGEHRGSSQDHGSGSSDGDGWRVSS---------QGFGPSPFPAVDSFLR-TLVGQGGTRGELRQWSYTAGQVPPRTVEHDHQEGNGNGNGSGNAGGTGLV----SPGSQSAPQPPATVVRKLTHQVANNRWCWNIGRAHKSNHVFLVTDLSRGEVRQHCHDQECRRSGYRSNPVRLPIGVAPLEDDLEAFELELGLAAAMRESPADW 1264
The following BLAST results are available for this feature:
BLAST of NO02G00360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75167.11.400e-2530.51similar to coiled-coil domain containing 111 [Ecto... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00360NO02G00360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00360.1NO02G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00360.1.cds1NO02G00360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00360.1 ID=NO02G00360.1|Name=NO02G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
ATGTACGAGATCATCAGGGAGGGCTACCCTTGCCGACTGTACTTTGATGT
GGAGTTCTCGCGTATCGCCAACAGGGGGCTGGATGGAGAGAAAGTGATGC
GCGAGCTGCAGGGGCGGGTCAGGGAGGGCTTGAGGGAGTTGCTTGGGGCA
GGGGTGGAAGCGGCATTTTTAGAGCTGGACAGCTCGACAGAGGAGAAGTT
TAGTCGGCATGTGATTGTACACCTGGAGGGAGGGAGGCTGTTTCGGTCTA
ACGCTCATGTAGGGAGGTTTGTGCAGCGGGTGACGCAGAAGATAGGCGGG
CCACCGTACGTGGACGGGCAGGGAGGTGGGGAGGAGGGGGAGGAAGGCAG
GAAAAAGAGCTTGCTCTGGGTGAGGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAAAGGAGAAGGGTGTGCAGCAGGAGATGGTAACAGATACAAAG
GAGGTATTGGCAGTGATGCTAGTACAGCAACAGCAGCAGCAAAAACAGCG
GCAGCGGCAGCAGCAGCAGCAACCTCCGTACATCCTTGCAGTCGACACCT
CCGTGTACACCAAAAACCGAGCCTTTCGCATCCTTTATTCCCAAAAGTTC
GGAAAGACGGCCACGTTCCAAGTCACCTCTGAAAGCGCGCAGACTTTCCT
CCCTCCTTCCTCCTGTCCCCTGTGCCCCCCCTCCCCCACCCCTCCTCAAA
ACCCTCACGACTGGATCCTCGCGTCGCTCGTCGTCCCTTACCTCCCTTGC
GGGCACTTACCCTCCCCTGCTTTCATCACCCTCCCCGAAGCCAGTACACA
AATGTTCGTTCATAAATTTGGGACGCTTGAAAGCGTTCACAGCAACAGCA
GCATCTATAGCGGCGGCAACACTAGCAGCAGCAGTGGATACAGGAGTTTA
AGTTGCCCCTTTTTGTTTGCCTTCGAAGGCGAGGGAGGGAGGCCTTCGCC
CTTGCCAGCGCTGGATGCATATGTACAAGGCAACCACATGTCCCACGGCG
GAGTACCTGGCGTTATTCGTGGATGGCAATATTCCTACAGTAGCAGCAAC
AGCAGCAGCAATTGCGGCGGAACCTGTGCAGCCACAGGGACAGCAGATGG
AACGGAGACGACAATGGAGTCCACAACTCCGCCCTTGCCCCTGTTGCCGA
CCAGCATCCTCACCTACCAAGTGGGCCGTAACAGGTGGTGCCATCGCATC
GGGCGCGCGCACAAGAGCAACCACACGATGGTGTCCGTCGACTTGAGGCG
GGGCTGCCTTTATCAAAGGTGCCACGATCCTGAGTGTCGATCGTACAAGG
GCCCGCTGCACTGGCTGCCCCTGGCATTGGTACCCTCGGCGGAGACGCTC
GAGAGCATAGAGCTCGATGCAGCCCTGGCCGATGCCTGTGCCAGGGAACC
AGGAAGGTGGGGTTAA
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protein sequence of NO02G00360.1

>NO02G00360.1-protein ID=NO02G00360.1-protein|Name=NO02G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MYEIIREGYPCRLYFDVEFSRIANRGLDGEKVMRELQGRVREGLRELLGA
GVEAAFLELDSSTEEKFSRHVIVHLEGGRLFRSNAHVGRFVQRVTQKIGG
PPYVDGQGGGEEGEEGRKKSLLWVRKEEEEEEEEEEKEKGVQQEMVTDTK
EVLAVMLVQQQQQQKQRQRQQQQQPPYILAVDTSVYTKNRAFRILYSQKF
GKTATFQVTSESAQTFLPPSSCPLCPPSPTPPQNPHDWILASLVVPYLPC
GHLPSPAFITLPEASTQMFVHKFGTLESVHSNSSIYSGGNTSSSSGYRSL
SCPFLFAFEGEGGRPSPLPALDAYVQGNHMSHGGVPGVIRGWQYSYSSSN
SSSNCGGTCAATGTADGTETTMESTTPPLPLLPTSILTYQVGRNRWCHRI
GRAHKSNHTMVSVDLRRGCLYQRCHDPECRSYKGPLHWLPLALVPSAETL
ESIELDAALADACAREPGRWG*
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mRNA from alignment at chr2:129033..130448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00360.1 ID=NO02G00360.1|Name=NO02G00360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at chr2:129033..130448- (Nannochloropsis oceanica)
ATGTACGAGATCATCAGGGAGGGCTACCCTTGCCGACTGTACTTTGATGT
GGAGTTCTCGCGTATCGCCAACAGGGGGCTGGATGGAGAGAAAGTGATGC
GCGAGCTGCAGGGGCGGGTCAGGGAGGGCTTGAGGGAGTTGCTTGGGGCA
GGGGTGGAAGCGGCATTTTTAGAGCTGGACAGCTCGACAGAGGAGAAGTT
TAGTCGGCATGTGATTGTACACCTGGAGGGAGGGAGGCTGTTTCGGTCTA
ACGCTCATGTAGGGAGGTTTGTGCAGCGGGTGACGCAGAAGATAGGCGGG
CCACCGTACGTGGACGGGCAGGGAGGTGGGGAGGAGGGGGAGGAAGGCAG
GAAAAAGAGCTTGCTCTGGGTGAGGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAAAGGAGAAGGGTGTGCAGCAGGAGATGGTAACAGATACAAAG
GAGGTATTGGCAGTGATGCTAGTACAGCAACAGCAGCAGCAAAAACAGCG
GCAGCGGCAGCAGCAGCAGCAACCTCCGTACATCCTTGCAGTCGACACCT
CCGTGTACACCAAAAACCGAGCCTTTCGCATCCTTTATTCCCAAAAGTTC
GGAAAGACGGCCACGTTCCAAGTCACCTCTGAAAGCGCGCAGACTTTCCT
CCCTCCTTCCTCCTGTCCCCTGTGCCCCCCCTCCCCCACCCCTCCTCAAA
ACCCTCACGACTGGATCCTCGCGTCGCTCGTCGTCCCTTACCTCCCTTGC
GGGCACTTACCCTCCCCTGCTTTCATCACCCTCCCCGAAGCCAGTACACA
AATGTTCGTTCATAAATTTGGGACGCTTGAAAGCGTTCACAGCAACAGCA
GCATCTATAGCGGCGGCAACACTAGCAGCAGCAGTGGATACAGGAGTTTA
AGTTGCCCCTTTTTGTTTGCCTTCGAAGGCGAGGGAGGGAGGCCTTCGCC
CTTGCCAGCGCTGGATGCATATGTACAAGGCAACCACATGTCCCACGGCG
GAGTACCTGGCGTTATTCGTGGATGGCAATATTCCTACAGTAGCAGCAAC
AGCAGCAGCAATTGCGGCGGAACCTGTGCAGCCACAGGGACAGCAGATGG
AACGGAGACGACAATGGAGTCCACAACTCCGCCCTTGCCCCTGTTGCCGA
CCAGCATCCTCACCTACCAAGTGGGCCGTAACAGGTGGTGCCATCGCATC
GGGCGCGCGCACAAGAGCAACCACACGATGGTGTCCGTCGACTTGAGGCG
GGGCTGCCTTTATCAAAGGTGCCACGATCCTGAGTGTCGATCGTACAAGG
GCCCGCTGCACTGGCTGCCCCTGGCATTGGTACCCTCGGCGGAGACGCTC
GAGAGCATAGAGCTCGATGCAGCCCTGGCCGATGCCTGTGCCAGGGAACC
AGGAAGGTGGGGTTAA
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Coding sequence (CDS) from alignment at chr2:129033..130448-

>NO02G00360.1 ID=NO02G00360.1|Name=NO02G00360.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr2:129033..130448- (Nannochloropsis oceanica)
ATGTACGAGATCATCAGGGAGGGCTACCCTTGCCGACTGTACTTTGATGT
GGAGTTCTCGCGTATCGCCAACAGGGGGCTGGATGGAGAGAAAGTGATGC
GCGAGCTGCAGGGGCGGGTCAGGGAGGGCTTGAGGGAGTTGCTTGGGGCA
GGGGTGGAAGCGGCATTTTTAGAGCTGGACAGCTCGACAGAGGAGAAGTT
TAGTCGGCATGTGATTGTACACCTGGAGGGAGGGAGGCTGTTTCGGTCTA
ACGCTCATGTAGGGAGGTTTGTGCAGCGGGTGACGCAGAAGATAGGCGGG
CCACCGTACGTGGACGGGCAGGGAGGTGGGGAGGAGGGGGAGGAAGGCAG
GAAAAAGAGCTTGCTCTGGGTGAGGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAAAGGAGAAGGGTGTGCAGCAGGAGATGGTAACAGATACAAAG
GAGGTATTGGCAGTGATGCTAGTACAGCAACAGCAGCAGCAAAAACAGCG
GCAGCGGCAGCAGCAGCAGCAACCTCCGTACATCCTTGCAGTCGACACCT
CCGTGTACACCAAAAACCGAGCCTTTCGCATCCTTTATTCCCAAAAGTTC
GGAAAGACGGCCACGTTCCAAGTCACCTCTGAAAGCGCGCAGACTTTCCT
CCCTCCTTCCTCCTGTCCCCTGTGCCCCCCCTCCCCCACCCCTCCTCAAA
ACCCTCACGACTGGATCCTCGCGTCGCTCGTCGTCCCTTACCTCCCTTGC
GGGCACTTACCCTCCCCTGCTTTCATCACCCTCCCCGAAGCCAGTACACA
AATGTTCGTTCATAAATTTGGGACGCTTGAAAGCGTTCACAGCAACAGCA
GCATCTATAGCGGCGGCAACACTAGCAGCAGCAGTGGATACAGGAGTTTA
AGTTGCCCCTTTTTGTTTGCCTTCGAAGGCGAGGGAGGGAGGCCTTCGCC
CTTGCCAGCGCTGGATGCATATGTACAAGGCAACCACATGTCCCACGGCG
GAGTACCTGGCGTTATTCGTGGATGGCAATATTCCTACAGTAGCAGCAAC
AGCAGCAGCAATTGCGGCGGAACCTGTGCAGCCACAGGGACAGCAGATGG
AACGGAGACGACAATGGAGTCCACAACTCCGCCCTTGCCCCTGTTGCCGA
CCAGCATCCTCACCTACCAAGTGGGCCGTAACAGGTGGTGCCATCGCATC
GGGCGCGCGCACAAGAGCAACCACACGATGGTGTCCGTCGACTTGAGGCG
GGGCTGCCTTTATCAAAGGTGCCACGATCCTGAGTGTCGATCGTACAAGG
GCCCGCTGCACTGGCTGCCCCTGGCATTGGTACCCTCGGCGGAGACGCTC
GAGAGCATAGAGCTCGATGCAGCCCTGGCCGATGCCTGTGCCAGGGAACC
AGGAAGGTGGGGTTAA
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Synonyms
Publications