NO02G00220.2, NO02G00220.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00220.2
Unique NameNO02G00220.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr2:83375..85853 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:83375..85853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G00220.2 vs.
Match: CBJ26758.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 296.2 bits (757), Expect = 1.700e-76
Identity = 178/377 (47.21%), Postives = 233/377 (61.80%), Query Frame = 0 
Query:   79 SSGDDEEESVLLRKQQAKGSKA-----------GATATAAKTSVL--------HTYASSGSAAPAPVAGGATYTSEIDTEHDRDNRALLEMAIKVQREEEEEAVGLGGEKIYRGQAGYRNYVPKNEAQIGGNKYTGTQGPIRAPSYLRATAVFDYKPDICKDYKETGFCGFGDGCKFMHDRSDYKSGYELEQEWETQQKRKRQRD-LGEWAGSEDEEEGDDAYLIKEDDDLPFACFLCREGFRDPVVTVCGHYFCSSCALQHHKTDPTCPACGEKTGGVFNFAVKLFEKMKKDEAKRKAVEEKDGQRAALGKETVAIAAAKRRKKKKEEEEAEGVEGEGEGEEEEGGEEGEE--ELVIQEEDKDTVVKKKKGTWSTL 434
            S G   E+ V + K   KG K            GA A AA    L          + SS +A P   AGGAT+ +EIDT+ DRD RA+LE  I++     EE      + +Y G AGY+N++ K+EAQIGGNK+TGTQGPIRAP++LRAT  FDY+PDICKDYKETGFCGFGD CKF+HDR+DYKSG+ +EQE+E ++K++++R+ LGEWA  E+EEE    YL++ DDDLPFAC +CR+GF DP+VT CGHYFC  CA +H+KT+P C ACG++T GVFN A KL EK++K                            K    +KE+  A G  G   G +E GG+   E  E  +Q  + D VV++K GTW+T+
Sbjct:   68 SGGSSSEDDVAVVKADKKGKKGVNNFSTGGGSGGAEARAAAREALAKETMSAGSLFDSSRTAVPVSNAGGATHYTEIDTQADRDTRAILEKNIRLN----EEGATTDKDGLYHGMAGYKNHIKKDEAQIGGNKHTGTQGPIRAPTFLRATCRFDYQPDICKDYKETGFCGFGDSCKFLHDRADYKSGWAMEQEFEAKEKKRKEREALGEWAEEENEEE----YLVESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRK----------------------------KGMVTRKEQAGAAG-GGASAGADEGGGDSDYEIREDGVQLTETD-VVRRKTGTWATV 406
The following BLAST results are available for this feature:
BLAST of NO02G00220.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ26758.11.700e-7647.21conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00220NO02G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00220.2NO02G00220.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00220.2.cds1NO02G00220.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds2NO02G00220.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds3NO02G00220.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds4NO02G00220.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds5NO02G00220.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds6NO02G00220.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds7NO02G00220.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00220.2.cds8NO02G00220.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00220.2 ID=NO02G00220.2|Name=NO02G00220.2|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
CAGGCCATACGCACGCAGGCATGGCCGACAGCACAGGTGATGGCGGCGGC
GGAGAGGGGGGCAAGCCAGTGTGCGTCTTCAAGAAACCCGTTTTCAAGAA
GAAGGGAGGAGCAGCAAAACAACAAAACAAACGGGCGCGAAAGCAGGCCA
GCGACTCGGGCTCCGGCAGGTAGGGTAGAGATGAAGGAAAGAAGGGAGGA
CAGGCGGGCTTGTCTCAGTACAAGCCTTCTCGCACACTCTCACACACGCA
TCCCCTACGCCCTTATACTCCCCAGCTCGGGCGACGACGAGGAAGAATCT
GTTCTATTAAGAAAGCAGCAAGCTAAAGGATCAAAAGCGGGGGCCACAGC
CACCGCCGCCAAGACTAGCGTCCTCCACACCTACGCCTCCTCGGGGAGTG
CTGCTCCTGCTCCTGTGGCTGGGGGCGCCACCTACACCAGTGAAATTGAC
ACGGAGCACGACAGAGACAACAGAGCGTTGTTAGAAATGGCCATTAAGGT
CCAGAGGGAGGAGGAGGAGGAAGCGGTCGGACTGGGGGGGGAGAAGATCT
ATAGAGGACAGGCGGGGTACCGAAATTACGTGCCTAAGAACGAGGCGCAG
ATTGGTGGGAATAAGTACACGGGGACGCAGGGCCCCATCCGTGCCCCCTC
CTACTTGCGTGCGACGGCCGTCTTCGACTACAAGCCCGACATCTGCAAGG
ACTACAAGGAAACGGGCTTCTGCGGCTTCGGCGACGGCTGCAAATTCATG
CACGACCGAAGCGACTACAAGAGTGGGTATGAGCTGGAGCAAGAGTGGGA
AACGCAGCAGAAGAGGAAGCGACAACGCGACCTCGGGGAGTGGGCCGGGT
CAGAGGATGAGGAGGAGGGCGATGATGCCTACCTGATCAAGGAGGATGAC
GACCTTCCTTTCGCTTGCTTCTTGTGCCGCGAGGGCTTCCGCGATCCGGT
AGTGACGGTGTGTGGGCATTACTTCTGCTCATCATGCGCCCTCCAACACC
ACAAGACGGACCCCACCTGCCCGGCCTGTGGGGAGAAGACAGGCGGAGTC
TTTAATTTTGCGGTCAAGCTGTTCGAGAAGATGAAGAAGGACGAGGCGAA
ACGGAAGGCGGTGGAGGAGAAGGACGGACAGCGGGCTGCTCTCGGGAAGG
AGACGGTGGCGATCGCGGCCGCGAAGAGGAGGAAAAAGAAGAAGGAGGAG
GAGGAGGCGGAGGGGGTGGAAGGGGAGGGGGAGGGGGAGGAGGAGGAAGG
GGGGGAGGAAGGGGAGGAGGAGCTGGTGATTCAGGAGGAGGACAAAGACA
CGGTGGTGAAGAAGAAGAAGGGGACCTGGAGCACCCTGTGA
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protein sequence of NO02G00220.2

>NO02G00220.2-protein ID=NO02G00220.2-protein|Name=NO02G00220.2|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MAAAERGASQCASSRNPFSRRREEQQNNKTNGRESRPATRAPAGRVEMKE
RREDRRACLSTSLLAHSHTRIPYALILPSSGDDEEESVLLRKQQAKGSKA
GATATAAKTSVLHTYASSGSAAPAPVAGGATYTSEIDTEHDRDNRALLEM
AIKVQREEEEEAVGLGGEKIYRGQAGYRNYVPKNEAQIGGNKYTGTQGPI
RAPSYLRATAVFDYKPDICKDYKETGFCGFGDGCKFMHDRSDYKSGYELE
QEWETQQKRKRQRDLGEWAGSEDEEEGDDAYLIKEDDDLPFACFLCREGF
RDPVVTVCGHYFCSSCALQHHKTDPTCPACGEKTGGVFNFAVKLFEKMKK
DEAKRKAVEEKDGQRAALGKETVAIAAAKRRKKKKEEEEAEGVEGEGEGE
EEEGGEEGEEELVIQEEDKDTVVKKKKGTWSTL*
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mRNA from alignment at chr2:83375..85853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00220.2 ID=NO02G00220.2|Name=NO02G00220.2|organism=Nannochloropsis oceanica|type=mRNA|length=2479bp|location=Sequence derived from alignment at chr2:83375..85853- (Nannochloropsis oceanica)
CAGGCCATACGCACGCAGGCATGGCCGACAGCACAGGTGATGGCGGCGGC
GGAGAGGGGGGCAAGCCAGGTGAGTCCTAGGTGAAAATCAAGTCCGTCGT
GTGTGCTGCGGCTCGAATCACTTCCTCCCTCCCTCCTCCCTCTTTCCGTT
CCCCTCCCTTCCTAGTGTGCGTCTTCAAGAAACCCGTTTTCAAGAAGAAG
GGAGGAGCAGCAAAACAACAAAACAAACGGGCGCGAAAGCAGGCCAGCGA
CTCGGGCTCCGGCAGGTAGGGTAGAGATGAAGGAAAGAAGGGAGGACAGG
CGGGCTTGTCTCAGTACAAGCCTTCTCGCACACTCTCACACACGCATCCC
CTACGCCCTTATACTCCCCAGCTCGGGCGACGACGAGGAAGAATCTGTTC
TATTAAGAAAGCAGCAAGCTAAAGGATCAAAAGCGGGGGCCACAGCCACC
GCCGCCAAGACTAGCGTCCTCCACACCTACGCCTCCTCGGGGAGTGCTGC
TCCTGCTCCTGTGGCTGGGGGCGCCACCTACACCAGTGAAATTGACACGG
AGCACGACAGAGACAACAGAGCGTTGTTAGAAATGGCCATTAAGGTCCAG
AGGGAGGAGGAGGAGGAAGCGGTCGGACTGGGGGGGGAGAAGATCTATAG
AGGACAGGTGAGGAGGGCATCGAGAAGGAAGGGAGGGAGGGAGGAAGGGA
GGGAGTTGCCTGAAATTCCACCTCATCTCAGTCATCCATGTTCTGATCGT
TCTCACCTTCTTCCTTCCTTTCCTTTATTCAGGCGGGGTACCGAAATTAC
GTGCCTAAGAACGAGGCGCAGATTGGTGGGAATAAGTACACGGGGACGCA
GGTGAGAGAGGGGAAAAGGGAGGGAGGGGGCCGAGGAGGTGGATAGACAG
GGGCCGAACGGCTCAAAAGGGGAGTTGTTAAGGGCCCTTCGTTGTTTGTG
GGCTCACCCTGCAAATGGAGCTTCCCTGTTCTGCCTTTATTGCCTCTTTC
ATTCTTTGCGCACACCCACCAGAGGCTCTGCCCACCACAACTTGACCTCA
CCACTCACACTCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCCCCCATCCCAGGGCCCCATCCGTGCCCCCTCCTACTTGCGTGC
GACGGCCGTCTTCGACTACAAGCCCGACATCTGCAAGGACTACAAGGAAA
CGGGCTTCTGCGGCTTCGGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTTCAACCTTCCTTTGATTGCTCCTGACACCTTCGCCCTCC
CTCCCTCCCTCCCTCTTGCCCGCCCTCCCTCCCTCCCTCCCTCAGCGACG
GCTGCAAATTCATGCACGACCGAAGCGACTACAAGAGTGGGTATGAGCTG
GAGCAAGAGTGGGAAACGCAGCAGAAGAGGAAGCGACAACGGTAATGAGG
AAGGGAGGGAGGGAGGGAGCAAGGAGAGATGAAGGTCTGTCTGTCACGTC
ACACTTGGAAACTTTGTCGGAAACGTTATCATCCATCCCCTCCCTCCCTC
CCTCCTTCCCTCCCTCCCTTCCTCCCTCCCCCAGCGACCTCGGGGAGTGG
GCCGGGTCAGAGGATGAGGAGGAGGGCGATGATGCCTACCTGATCAAGGA
GGATGACGACCTTCCTTTCGCTTGCTTCTTGTGCCGCGAGGGTGAGGAAG
GAAGGGAAAGAGGGAGGGATGGAGGGAGGGCGGAAGGGAGGGAGGGGGGA
AGATGGCAAATATCAGTTTACAAACATGCTATTATTTTTGTCACACGCTT
TTCCGCCGTCCTTCCCTCCCTCCCTCCCTCCCCCCCTCAGGCTTCCGCGA
TCCGGTAGTGACGGTGTGTGGGCATTACTTCTGCTCATCATGCGCCCTCC
AACACCACAAGACGGACCCCACCTGCCCGGCCTGTGGGGAGAAGACAGGT
AGGTTAGGGCGAACGGTGAAGCGAGCAAGCAACCTCGCCCTCCTCTCTTC
CTTCCCTCCATCCCTCTCTCCCTCGATTGATCGATCTCTTACTCGTAGGT
GGGTCCTGGACGGAATGAAGCGTTGCTGAGACTCACACGAAAAAAGTCGT
CGTCTGTTCTGACTCCTGCCCTCTCTCCCTCCTTCCTTTCTCCCTCCTTC
CCTCCCTCCCTCCTTCTTTCCCTCCTCCAGGCGGAGTCTTTAATTTTGCG
GTCAAGCTGTTCGAGAAGATGAAGAAGGACGAGGCGAAACGGAAGGCGGT
GGAGGAGAAGGACGGACAGCGGGCTGCTCTCGGGAAGGAGACGGTGGCGA
TCGCGGCCGCGAAGAGGAGGAAAAAGAAGAAGGAGGAGGAGGAGGCGGAG
GGGGTGGAAGGGGAGGGGGAGGGGGAGGAGGAGGAAGGGGGGGAGGAAGG
GGAGGAGGAGCTGGTGATTCAGGAGGAGGACAAAGACACGGTGGTGAAGA
AGAAGAAGGGGACCTGGAGCACCCTGTGA
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Coding sequence (CDS) from alignment at chr2:83375..85853-

>NO02G00220.2 ID=NO02G00220.2|Name=NO02G00220.2|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at chr2:83375..85853- (Nannochloropsis oceanica)
ATGGCGGCGGCGGAGAGGGGGGCAAGCCAGTGTGCGTCTTCAAGAAACCC
GTTTTCAAGAAGAAGGGAGGAGCAGCAAAACAACAAAACAAACGGGCGCG
AAAGCAGGCCAGCGACTCGGGCTCCGGCAGGTAGGGTAGAGATGAAGGAA
AGAAGGGAGGACAGGCGGGCTTGTCTCAGTACAAGCCTTCTCGCACACTC
TCACACACGCATCCCCTACGCCCTTATACTCCCCAGCTCGGGCGACGACG
AGGAAGAATCTGTTCTATTAAGAAAGCAGCAAGCTAAAGGATCAAAAGCG
GGGGCCACAGCCACCGCCGCCAAGACTAGCGTCCTCCACACCTACGCCTC
CTCGGGGAGTGCTGCTCCTGCTCCTGTGGCTGGGGGCGCCACCTACACCA
GTGAAATTGACACGGAGCACGACAGAGACAACAGAGCGTTGTTAGAAATG
GCCATTAAGGTCCAGAGGGAGGAGGAGGAGGAAGCGGTCGGACTGGGGGG
GGAGAAGATCTATAGAGGACAGGCGGGGTACCGAAATTACGTGCCTAAGA
ACGAGGCGCAGATTGGTGGGAATAAGTACACGGGGACGCAGGGCCCCATC
CGTGCCCCCTCCTACTTGCGTGCGACGGCCGTCTTCGACTACAAGCCCGA
CATCTGCAAGGACTACAAGGAAACGGGCTTCTGCGGCTTCGGCGACGGCT
GCAAATTCATGCACGACCGAAGCGACTACAAGAGTGGGTATGAGCTGGAG
CAAGAGTGGGAAACGCAGCAGAAGAGGAAGCGACAACGCGACCTCGGGGA
GTGGGCCGGGTCAGAGGATGAGGAGGAGGGCGATGATGCCTACCTGATCA
AGGAGGATGACGACCTTCCTTTCGCTTGCTTCTTGTGCCGCGAGGGCTTC
CGCGATCCGGTAGTGACGGTGTGTGGGCATTACTTCTGCTCATCATGCGC
CCTCCAACACCACAAGACGGACCCCACCTGCCCGGCCTGTGGGGAGAAGA
CAGGCGGAGTCTTTAATTTTGCGGTCAAGCTGTTCGAGAAGATGAAGAAG
GACGAGGCGAAACGGAAGGCGGTGGAGGAGAAGGACGGACAGCGGGCTGC
TCTCGGGAAGGAGACGGTGGCGATCGCGGCCGCGAAGAGGAGGAAAAAGA
AGAAGGAGGAGGAGGAGGCGGAGGGGGTGGAAGGGGAGGGGGAGGGGGAG
GAGGAGGAAGGGGGGGAGGAAGGGGAGGAGGAGCTGGTGATTCAGGAGGA
GGACAAAGACACGGTGGTGAAGAAGAAGAAGGGGACCTGGAGCACCCTGT
GA
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Synonyms
Publications