NO02G00140.1, NO02G00140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G00140.1
Unique NameNO02G00140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2942
Alignment locationchr2:53252..56977 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:53252..56977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO02G00140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00140NO02G00140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G00140.1NO02G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G00140.1.cds1NO02G00140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00140.1.cds2NO02G00140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00140.1.cds3NO02G00140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00140.1.cds4NO02G00140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00140.1.cds5NO02G00140.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G00140.1.cds6NO02G00140.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G00140.1 ID=NO02G00140.1|Name=NO02G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2942bp
CTCATATATATAGAAGACGCAGCTGAATTTGAAAATCGCCGACTCTCCGA
CCTCCGCTTCGGCCTCATAACGGCTCCAAACCTGAAGGCGTAGAGGTAGG
CCCGGCATGCATCCCTTTCTCTCTTCCTCCCCGCTATGGCACAGCGCATA
GTTAGCTATCCTACCCGCGACGCTGCAACGCTCACGACACCACACAAGTA
CAGGTGTAGCACGGAAACATGAGCCGTGTGATGAAAGATGATGCCGATTA
CCAAGGGAGCATTTGATTGGCTATCCACAAGCAAGTATTTCGTTATCGGT
CAAATGGCTTGATCAAAGCGAGATCTGTACGTTGTTCTTGTCTCACTCCT
TCGATAAACGTGTTTTGACCCGATCTGGCACGCGGACGGCATCGACGCGT
GTCGTGCTGCTGACTTCCACACTGTAGAAAGAATCCCGCCTAGTGCGCGA
AGCCTCAGGCAATGTCCAAAGAATGTATTCTATGGTGCTGGGAGGCGCGA
TTCAGGACGACAGTGGAATAGTAAAGCGCAATGGCTGGGGTCTGTGCGTG
ATTTGCAGTAAACTTACGGCAACATAGTTGACATCACTAATAACTACTAT
CCCCCCACGATCATATCGCATGTCCCATAACATAGCAGCTAGGAGGACGC
AAGAGACGGTACGGGCATCATGCTGAACACTTCTGAGCTGCGGCCGCGAC
GGAAATTGGGGGAGGGAGCGCACGGGGGGGGGAAGAATGTCTTTGAGATG
GCACTGTCTGGGATGGACCAGATGATGATCGGGTGGATGATGGTGGCGGT
CGTTTTCAGCCAGCTCGTCCTTGACGAGGTACTAAGGCGGGCAGAGGCCT
CAGTCGGGACGAATGCGCGTGCATGCCTGCGAGAGGTGTATAAGGAATTG
TCCACGTTGGGTCTGATCTCTTTCACGCTATTTATGGTCCAGAGCTTCGA
GACTCAGGTGAACGAGGCCACGCTACTGGCGTTTGAGTACTCCCACATCT
TCGTCTTCTCATTTGCCATCGTCTACGTGATTCAGTCTGCGGTTGTTATC
GCCTGTATCAACCCCATCAAGCGACGCCTCATCCGCCTGCACGCGTACGG
AGATGCCGTAGTCGCCGCCGTCGCTGCCACCGTCCCCCAACCCTCTCAAT
ATCCTCCCACTGGTGATCGGAATAGTGATCTCTCCGTGCTAGACCGGCTA
TATGCCTTAATTTGTTGTGCATTTGGCGGTGCATCGGGGGCGTCGCCGAC
ACTGAGCCGCAGCAAGGAGGCCGTACGCGCCTTCGACGGGTTCCGGGCTT
TTCGTCGGAAGTTTCTGAGGAAACATAGCTTGCCCGCATGTTTTCTATTC
GACCACTACCTTATCGAAGTTTATGACCGCTGGGTAATATTGAAGCTGGA
TATTGCTACCTGGTGCTGGGCGCTTATGTGCGTCATATTCGGTATTCACG
CCCTAGTGGCGCGCTTTCCCCACTTTGCAGCCTTCTGCCTCAACCGCTGG
ACATTCTTGTGCTATGGCTGGCTCCTTCTTCTCGCGGATTACACACTCTT
CATCCTTGTCCATAGGGTGCACGAACGTGTCCTCAAACAGGTCCGATCAA
GTAACAGCGACAGTCTCAGCGTCAGCACCACCTCTTCCACGTGTTCCATA
GCCAACGGGAGCATGCGCTCGAGCTCTGCCGCGAGCGTCGATGCGGCTGG
TGGTAGCGGTGGGTCAGTTGGGCAGATGGGAGAGGAGGATGTCATGGAGG
AGCTGCGACAGCGGCGGGCGGCGCTGCATGCCCAGTATTTCCGTGAACAG
AAAGAAAAAGATGGGGCTCATGAGATAATAGACGCCGGAATCGGAGAGAA
CGGAAATGAGCATGCGGATGTGGGTGTCCTGCGGCACCCTCCCCGGCACT
GGCACTGGGGCGTCGCCAACCTGCTGAATGCTGGTGGCATCACTAACAAC
ACCCCTACGAACAACGTCGTTGCCGACGGGGCCCTAGGATTTACCCTGTG
GGAAAGTTTTGCTTTTAACTACGGCACCGAGGCACTCAGCATAATTAGGT
GCCTGTATCTGGCCGCGTGGCCATGCACATATACTGTGCCCGCTTTCGGG
GAGTGGTTCTCCACCGGCTGGGCGCTCTTATACATCCTCGTTATTCCCAT
CCCGGCCATCATCACCGGTACCGTCCTCATTCCGCGTATGGCCACGCGAT
TCCTCCTTGTGGGATCTCTTTCCGTCCTAAATCTCGAGGCGTTCGATGCG
GTCGTCGAGTACATGGAGGATGCCGAGGCCGCGCTTAAAGACATCGCGCA
TCTCCTGCAACGCCTCACCAACATAAATGACACGGGAGCTAGCAGCGTGG
AGCAGCTCTTCGCTTCTCTGGCCCAGCACCATCGTCACCATCGCCTTTCT
CCCTCCGATCTCACCCATGCCACCAACGCACGCGTCGCCCGTGCCCTTTC
CCAGACCAACCCCCCCGAAAGCAGTAGCTTCATCACATATGCCGAGCTCC
GCGACTTCTTACGGCACCACGGAGTGCACCTCCCTCTTCGCCGCTTCCGC
GCGCTGGTCCGCTTCATCGACTTGGACCTAGGTGGCCACGTGAATTTGGA
GGATTTCAGAGCCCTACTCCGGGCCGATCACCTCTTTGAAGCCCAGAGGC
CTCATCAGTGCCCGTCGTCGGCTCGTGTTGCACGACTCCTCAGCCAGGAT
ACCCTGAACTATCATCCCCAAAATAGTTTGCATGGGCAGGACGCGGTGTT
TGCAGACGTGGGGCAATTGCTTCGGCGAGGGAGCAGAGCCTTTTTAAGTC
GAGTTACGCGGTCTATGGAACAAAGGGATAGTAGTGATCGAGCAGGGGGT
GTAACTGCGGCTTCGGGGGTGTAATTTAATCGGTTGTTGTACATAATTAA
TGCTATAAAGTAGAAAAATCTCGACCTTTTCAACGCGTCTAC
back to top

protein sequence of NO02G00140.1

>NO02G00140.1-protein ID=NO02G00140.1-protein|Name=NO02G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=735bp
MLNTSELRPRRKLGEGAHGGGKNVFEMALSGMDQMMIGWMMVAVVFSQLV
LDEVLRRAEASVGTNARACLREVYKELSTLGLISFTLFMVQSFETQVNEA
TLLAFEYSHIFVFSFAIVYVIQSAVVIACINPIKRRLIRLHAYGDAVVAA
VAATVPQPSQYPPTGDRNSDLSVLDRLYALICCAFGGASGASPTLSRSKE
AVRAFDGFRAFRRKFLRKHSLPACFLFDHYLIEVYDRWVILKLDIATWCW
ALMCVIFGIHALVARFPHFAAFCLNRWTFLCYGWLLLLADYTLFILVHRV
HERVLKQVRSSNSDSLSVSTTSSTCSIANGSMRSSSAASVDAAGGSGGSV
GQMGEEDVMEELRQRRAALHAQYFREQKEKDGAHEIIDAGIGENGNEHAD
VGVLRHPPRHWHWGVANLLNAGGITNNTPTNNVVADGALGFTLWESFAFN
YGTEALSIIRCLYLAAWPCTYTVPAFGEWFSTGWALLYILVIPIPAIITG
TVLIPRMATRFLLVGSLSVLNLEAFDAVVEYMEDAEAALKDIAHLLQRLT
NINDTGASSVEQLFASLAQHHRHHRLSPSDLTHATNARVARALSQTNPPE
SSSFITYAELRDFLRHHGVHLPLRRFRALVRFIDLDLGGHVNLEDFRALL
RADHLFEAQRPHQCPSSARVARLLSQDTLNYHPQNSLHGQDAVFADVGQL
LRRGSRAFLSRVTRSMEQRDSSDRAGGVTAASGV*
back to top

mRNA from alignment at chr2:53252..56977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G00140.1 ID=NO02G00140.1|Name=NO02G00140.1|organism=Nannochloropsis oceanica|type=mRNA|length=3726bp|location=Sequence derived from alignment at chr2:53252..56977+ (Nannochloropsis oceanica)
CTCATATATATAGAAGACGCAGCTGAATTTGAAAATCGCCGACTCTCCGA CCTCCGCTTCGGCCTCATAACGGCTCCAAACCTGAAGGCGTAGAGGTAGG CCCGGCATGCATCCCTTTCTCTCTTCCTCCCCGCTATGGCACAGCGCATA GTTAGCTATCCTACCCGCGACGCTGCAACGCTCACGACACCACACAAGTA CAGGTGTAGCACGGAAACATGAGCCGTGTGATGAAAGATGATGCCGATTA CCAAGGGAGCATTTGATTGGCTATCCACAAGCAAGTATTTCGTTATCGGT CAAATGGCTTGATCAAAGCGAGATCTGTACGTTGTTCTTGTCTCACTCCT TCGATAAACGTGTTTTGACCCGATCTGGCACGCGGACGGCATCGACGCGT GTCGTGCTGCTGACTTCCACACTGTAGAAAGAATCCCGCCTAGTGCGCGA AGCCTCAGGCAATGTCCAAAGAATGTATTCTATGGTGCTGGGAGGCGCGA TTCAGGACGACAGTGGAATAGTAAAGCGCAATGGCTGGGGTCTGTGCGTG ATTTGCAGTAAACTTACGGCAACATAGTTGACATCACTAATAACTACTAT CCCCCCACGATCATATCGCATGTCCCATAACATAGCAGCTAGGAGGACGC AAGAGACGGTACGGGCATCATGCTGAACACTTCTGAGCTGCGGCCGCGAC GGAAATTGGGGGAGGGAGCGCACGGGGGGGGGAAGAATGTCTTTGAGATG GCACTGTCTGGGATGGACCAGATGATGATCGGGTGGATGATGGTGGCGGT CGTTTTCAGCCAGCTCGTCCTTGACGAGGTACTAAGGCGGGCAGAGGCCT CAGTCGGGACGAATGCGCGTGCATGCCTGCGAGAGGTGTATAAGGAATTG TCCACGGTCAGTACAGTACTACTTATGCCTGCCCGTCCGTCTTCCTCCCA CTTCCTCTCCCCCGCCTTTGCTTCCTCCCCTTTCCTCCTCATCCAAGCCC TTCCTCCACACTCTATCTTCACTACTTTTGCCAATCTCCTACGCCATATG ATGATGCACCATGCCAGGAATGCCACGGAAGTTGTCGAGGCCGGATAAGG GTCAGCGCGCCACGACAATAGCCCCTTCCATCCATTCGTGGATTTCTCTC TCAATCACTTACTAAACTCCTCTCTCCCGCCCTCTCTGCCTACCCCTCCC CCTCCCTCCCTTTCCTCTGCATATCCACAGTTGGGTCTGATCTCTTTCAC GCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAACGAGGCCACGCTAC TGGCGTTTGAGGTACGGAAATAATAACGGCACCTCATGCCACCTTTCTCC CAAATGCATCACCGCCATCTCTCGTCACCACATCCACAGTACTCCCACAT CTTCGTCTTCTCATTTGCCATCGTCTACGTGATTCAGTCTGCGGTTGTTA TCGCCTGTATCAACCCCATCAAGCGACGCCTCATCCGCCTGCACGCGTAC GGAGATGCCGTAGTCGCCGCCGTCGCTGCCACCGTCCCCCAACCCTCTCA ATATCCTCCCACTGGTGATCGGAATAGTGATCTCTCCGTGCTAGACCGGC TATATGCCTTAATTTGTTGTGCATTTGGCGGTGCATCGGGGGCGTCGCCG ACACTGAGCCGCAGCAAGGAGGCCGTACGCGCCTTCGACGGGTTCCGGGC TTTTCGTCGGAAGTTTCTGAGGAAACATAGCTTGCCCGCATGTTTTCTAT TCGACCACTACCTTATCGAAGTTTATGACCGCTGGGTAATATTGAAGCTG GATATTGCTACCTGGTGCTGGGCGCTTATGTGCGTCATATTCGGTATTCA CGCCCTAGTGGCGCGCTTTCCCCACTTTGCAGCCTTCTGCCTCAACCGCT GGACATTCTTGTGCTATGGCTGGCTCCTTCTTCTCGCGGATTACACACTC TTCATCCTTGTCCATAGGGTGCGTGGGGATGGGGTAGGCTGCTCTGCTTG CATGACAGGCAAATCTGAACTCACCTCACCCACCACCATACTCTACCGAT CCCATCCATCAGGTGCACGAACGTGTCCTCAAACAGGTCCGATCAAGTAA CAGCGACAGTCTCAGCGTCAGCACCACCTCTTCCACGTGTTCCATAGCCA ACGGGAGCATGCGCTCGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGT AGCGGTGGGTCAGTTGGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCT GCGACAGCGGCGGGCGGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAG AAAAAGATGGGGCTCATGAGATAATAGACGCCGGAATCGGAGAGAACGGA AATGAGCATGCGGATGTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCA CTGGGGCGTCGCCAACCTGCTGAATGCTGGTGGCATCACTAACAACACCC CTACGAACAACGTCGTTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAA AGTTTTGCTTTTAACTACGGCACCGAGGCACTCAGCATAATTAGGTGCCT GTATCTGGCCGCGTGGCCATGCACATATACTGTGCCCGCTTTCGGGGAGT GGTTCTCCACCGGCTGGGCGCTCTTATACATCCTCGTTATTCCCATCCCG GTATGTCTTTGTGTTTTTGGTCGCACTCCAATCTTTTCCAAGCAGTGATA GGAATGCCAATGCCACGCCTATTATCTTAATTTGTCTCTTCTAACATCAA ATACGTGTAAATAATCTGCAGGCCATCATCACCGGTACCGTCCTCATTCC GCGTATGGCCACGCGATTCCTCCTTGTGGGATCTCTTTCCGTCCTAAATC TCGAGGCGTTCGATGCGGTCGTCGAGGTGAGACCATAGACTTATCTTGCG TGTATGTTTGTGAGCGTGAGTGTACCGGTACTTAAAGACGAAGTCCGGTT GGTGGTTTGAGTGTACTCTTGATTTTTTTCCGCGTCTTGCTGCCCAGTTC GTTCAATTTTCTCCCCTATCCCACTTAATTACGACACGAAAAGTACATGG AGGATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACGCCTC ACCAACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCGCTTC TCTGGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTCACCC ATGCCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCCCCCC GAAAGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTACGGCA CCACGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGCTTCA TCGACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGCCCTA CTCCGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCCCGTC GTCGGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTATCATC CCCAAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGGGCAA TTGCTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGTCTAT GGAACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCTTCGG GGGTGTAATTTAATCGGTTGTTGTACATAATTAATGCTATAAAGTAGAAA AATCTCGACCTTTTCAACGCGTCTAC
back to top

Coding sequence (CDS) from alignment at chr2:53252..56977+

>NO02G00140.1 ID=NO02G00140.1|Name=NO02G00140.1|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at chr2:53252..56977+ (Nannochloropsis oceanica)
ATGCTGAACACTTCTGAGCTGCGGCCGCGACGGAAATTGGGGGAGGGAGC
GCACGGGGGGGGGAAGAATGTCTTTGAGATGGCACTGTCTGGGATGGACC
AGATGATGATCGGGTGGATGATGGTGGCGGTCGTTTTCAGCCAGCTCGTC
CTTGACGAGGTACTAAGGCGGGCAGAGGCCTCAGTCGGGACGAATGCGCG
TGCATGCCTGCGAGAGGTGTATAAGGAATTGTCCACGTTGGGTCTGATCT
CTTTCACGCTATTTATGGTCCAGAGCTTCGAGACTCAGGTGAACGAGGCC
ACGCTACTGGCGTTTGAGTACTCCCACATCTTCGTCTTCTCATTTGCCAT
CGTCTACGTGATTCAGTCTGCGGTTGTTATCGCCTGTATCAACCCCATCA
AGCGACGCCTCATCCGCCTGCACGCGTACGGAGATGCCGTAGTCGCCGCC
GTCGCTGCCACCGTCCCCCAACCCTCTCAATATCCTCCCACTGGTGATCG
GAATAGTGATCTCTCCGTGCTAGACCGGCTATATGCCTTAATTTGTTGTG
CATTTGGCGGTGCATCGGGGGCGTCGCCGACACTGAGCCGCAGCAAGGAG
GCCGTACGCGCCTTCGACGGGTTCCGGGCTTTTCGTCGGAAGTTTCTGAG
GAAACATAGCTTGCCCGCATGTTTTCTATTCGACCACTACCTTATCGAAG
TTTATGACCGCTGGGTAATATTGAAGCTGGATATTGCTACCTGGTGCTGG
GCGCTTATGTGCGTCATATTCGGTATTCACGCCCTAGTGGCGCGCTTTCC
CCACTTTGCAGCCTTCTGCCTCAACCGCTGGACATTCTTGTGCTATGGCT
GGCTCCTTCTTCTCGCGGATTACACACTCTTCATCCTTGTCCATAGGGTG
CACGAACGTGTCCTCAAACAGGTCCGATCAAGTAACAGCGACAGTCTCAG
CGTCAGCACCACCTCTTCCACGTGTTCCATAGCCAACGGGAGCATGCGCT
CGAGCTCTGCCGCGAGCGTCGATGCGGCTGGTGGTAGCGGTGGGTCAGTT
GGGCAGATGGGAGAGGAGGATGTCATGGAGGAGCTGCGACAGCGGCGGGC
GGCGCTGCATGCCCAGTATTTCCGTGAACAGAAAGAAAAAGATGGGGCTC
ATGAGATAATAGACGCCGGAATCGGAGAGAACGGAAATGAGCATGCGGAT
GTGGGTGTCCTGCGGCACCCTCCCCGGCACTGGCACTGGGGCGTCGCCAA
CCTGCTGAATGCTGGTGGCATCACTAACAACACCCCTACGAACAACGTCG
TTGCCGACGGGGCCCTAGGATTTACCCTGTGGGAAAGTTTTGCTTTTAAC
TACGGCACCGAGGCACTCAGCATAATTAGGTGCCTGTATCTGGCCGCGTG
GCCATGCACATATACTGTGCCCGCTTTCGGGGAGTGGTTCTCCACCGGCT
GGGCGCTCTTATACATCCTCGTTATTCCCATCCCGGCCATCATCACCGGT
ACCGTCCTCATTCCGCGTATGGCCACGCGATTCCTCCTTGTGGGATCTCT
TTCCGTCCTAAATCTCGAGGCGTTCGATGCGGTCGTCGAGTACATGGAGG
ATGCCGAGGCCGCGCTTAAAGACATCGCGCATCTCCTGCAACGCCTCACC
AACATAAATGACACGGGAGCTAGCAGCGTGGAGCAGCTCTTCGCTTCTCT
GGCCCAGCACCATCGTCACCATCGCCTTTCTCCCTCCGATCTCACCCATG
CCACCAACGCACGCGTCGCCCGTGCCCTTTCCCAGACCAACCCCCCCGAA
AGCAGTAGCTTCATCACATATGCCGAGCTCCGCGACTTCTTACGGCACCA
CGGAGTGCACCTCCCTCTTCGCCGCTTCCGCGCGCTGGTCCGCTTCATCG
ACTTGGACCTAGGTGGCCACGTGAATTTGGAGGATTTCAGAGCCCTACTC
CGGGCCGATCACCTCTTTGAAGCCCAGAGGCCTCATCAGTGCCCGTCGTC
GGCTCGTGTTGCACGACTCCTCAGCCAGGATACCCTGAACTATCATCCCC
AAAATAGTTTGCATGGGCAGGACGCGGTGTTTGCAGACGTGGGGCAATTG
CTTCGGCGAGGGAGCAGAGCCTTTTTAAGTCGAGTTACGCGGTCTATGGA
ACAAAGGGATAGTAGTGATCGAGCAGGGGGTGTAACTGCGGCTTCGGGGG
TGTAA
back to top
Synonyms
Publications