|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:28538..32200 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00100.1 vs.
Match: EWM30657.1 (alanine-glyoxylate aminotransferase 2-like 1 [Nannochloropsis gaditana]) HSP 1 Score: 478.8 bits (1231), Expect = 2.400e-131 Identity = 255/379 (67.28%), Postives = 290/379 (76.52%), Query Frame = 0
Query: 199 SGSEANDLALALSRAYTGHEDVVVLDYAYHGHTGTMIDISPYKHHGNSSLPSSSSSSPPSSPAIAPEEKGGEDERKHGHTSSSSSFPKKWVHVIPSPDTYRGPFTTTAAYVSHSSTLLDAAIS--------PPSLPSR---HIAAFFAEGVLACGGQVVLPPDYLRGMYSYIRSKGGLCIADEVQTGFGRSGSHMWAYEAQGVIPDIITLGKPIANGFPLAAVITRKEIAESLPHSYFNTFGGSNLAMALGEATLDVVLKEKLQQKAERLGTMLRAMLEGLAQKHPLVGDVRGLGMMLGVELVEDKEAKTPAPAAAAYVLERARQMGVHIQVDGRWENVLKIKPPLAFTEADSHTLVETIDKALTEFEHKPEEGEMKKE 567
+GSEANDLALAL+RAYTGHED VVLD AYHGHT TMID+SPYKH G +S++ + G +H SS K WVHV+P PDTYRG F+T A YV+HS LLD + + P SL +R IAAF AE VLACGGQVVLPP YL GMY YI SKGGLC+ADEVQTGFGRSGSHMWA+++Q V+PDI+TLGKPIANGFPLAAVITRKEIAESLP SYFNTFGGSNLA+ALGEATLDV+L + LQ+KA RLG +L+ + E L +KH LVGDVRGLGMMLGVELVED+E K PAPAAAAYVLERARQMGVHIQVDG+WENVLK+KPPLAF E D+ TLV+TID AL E+ + GEM E
Sbjct: 14 AGSEANDLALALARAYTGHEDAVVLDSAYHGHTTTMIDMSPYKHKGARPASHLNSAAAKEGQELKEIPDGQFPLPRHSTPCLPSS--KDWVHVVPVPDTYRGRFSTAADYVNHSMALLDTSTASASHDLTAPNSLSNRGVRKIAAFCAESVLACGGQVVLPPGYLSGMYEYIHSKGGLCVADEVQTGFGRSGSHMWAFQSQDVVPDIVTLGKPIANGFPLAAVITRKEIAESLPISYFNTFGGSNLAVALGEATLDVILGDNLQEKAARLGALLKNLFESLKKKHSLVGDVRGLGMMLGVELVEDRETKAPAPAAAAYVLERARQMGVHIQVDGKWENVLKMKPPLAFMEEDAQTLVKTIDIALAEYAQR--MGEMNGE 388
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00100.1 ID=NO02G00100.1|Name=NO02G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp ACAGGATAGAGAAGGTGTCCTTGACGTCTTTGTCCCTCCCAAATCCTCTG CACTTTCTCCACGACCATGCAAGGCCCCTCCTTCTTCCTCTTGCTTCTCC TTGCAGCCAGTATAGGTGGTGGAGTGGTAGCATTAGCGGTAGTGGCTAGG CATAGACGAAAGACGCTTTTTCCTGGTGCTGATGATCAATCAGAAGTCAA GATCAAAAACAGACAGTGCAATCGTCCTTTTGGCAGCCAAGAAGCTGAGT CATCCACTCCAACCTCCTCGCAACAACCCCACGACCCTTGGAAGGAAGGT ATGACCCAGATGGAAATGCGACGCGTCCGAGCCGAGAACATGTTCAGTAG GCTGACGCTGTTCTACCAGGACGGTCACAGCAATTCCAGTGATGAAGGTG GAGACAAGGACGATCGAGCCCTCTGCATCTTGCGAGGAGAGGGCCAGTAC ATCTTTGATGAGGCGGGGAAACGGTACCTTGACTGCGTGAACAATGTGGC CCATATCGGACACTCTCACCCAGTCCTTGTCCAGGCAGCGCACGCACAAC TCCAGGCTATCAACACCAATACACGATACCATCACCCGGGCCGGTCCCGG TATGCCAAGAAGCTCCTGGGGCTCTTCCCGCCCGACCTCGACACCGTCTT CTTCGTCAACAGCGGCTCGGAGGCGAACGACCTGGCTTTGGCTCTGTCGC GGGCCTACACGGGGCACGAGGATGTGGTGGTCCTGGACTATGCCTACCAC GGCCACACTGGCACCATGATCGACATATCTCCCTACAAGCACCACGGAAA CTCCTCTCTCCCGTCTTCTTCATCCTCCTCCCCACCGTCCTCTCCTGCGA TTGCCCCGGAAGAGAAAGGGGGGGAAGACGAGCGGAAGCACGGCCACACT TCCTCCTCTTCATCCTTTCCCAAAAAGTGGGTCCACGTCATTCCCTCTCC CGATACCTACCGAGGGCCCTTCACCACCACCGCCGCCTACGTCTCGCACA GTTCTACCCTCCTCGATGCTGCCATCTCCCCTCCCTCCCTCCCTTCTCGT CATATCGCTGCTTTCTTTGCTGAGGGTGTTTTAGCTTGTGGTGGACAGGT TGTGCTCCCCCCCGACTACCTGCGCGGCATGTATTCCTACATACGCAGCA AGGGCGGGCTGTGCATTGCCGACGAGGTCCAAACAGGATTCGGCCGTAGT GGCAGCCACATGTGGGCCTATGAGGCGCAAGGCGTGATCCCCGACATTAT CACTCTGGGGAAGCCCATCGCCAACGGCTTTCCCCTCGCGGCCGTCATCA CCCGAAAGGAGATCGCCGAGTCCCTCCCCCATTCTTACTTCAACACCTTT GGGGGCAGCAACCTTGCCATGGCCTTGGGCGAGGCAACCCTGGACGTGGT CTTGAAGGAGAAGCTGCAGCAAAAGGCAGAGAGACTGGGGACGATGCTGC GAGCCATGCTGGAGGGGCTGGCACAGAAGCACCCCCTCGTCGGCGACGTC CGTGGGCTGGGGATGATGCTGGGCGTGGAGCTGGTGGAGGACAAGGAGGC CAAGACACCTGCACCGGCCGCTGCTGCCTACGTACTGGAGCGGGCAAGGC AGATGGGTGTGCACATTCAGGTGGACGGGAGATGGGAAAACGTGTTGAAG ATCAAGCCTCCCCTGGCTTTCACGGAGGCCGACTCCCACACCCTTGTCGA GACGATCGACAAGGCACTGACGGAGTTTGAGCACAAGCCGGAGGAAGGGG AAATGAAGAAGGAAAAATAGAAGACGATGGCGAGGACACCGACAGCCTTT CGTTGCTCCTCCGGCGAAATCGACAAAGCAAAGAGGATGAAAAAAAGACA ATGGGGCAACATATACATAGGATAAAGGAATCGCAGAGAGAGTAAGGGAG TGCTAGAGTGCTGGAAGGAGGGGAAGAGAGAAATGAGAAGAGCGAATTGT ATGTGATTGTACACAGAAAAAAGAAAAGCAAAAAGGGAGAAGAGACCACA GCACACACAGAATATGTTGCATCCACCCAACAAAAGCCATAAAGAAACAA AAGTAGGAGTGTCTGTGTATGAGCAATGGGGTGTACATCTTCGCACCCCA ATAGCCCTCTGAACGACGCGGGACCAGGAACGAACAAGATTGTGGCAGCT CATCTATCATTTTCAAACCCGTCATTTCTTCCTTCTTTTGCTGTTACAGA GCCTGTTGCGC back to topprotein sequence of NO02G00100.1 >NO02G00100.1-protein ID=NO02G00100.1-protein|Name=NO02G00100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp MQGPSFFLLLLLAASIGGGVVALAVVARHRRKTLFPGADDQSEVKIKNRQ CNRPFGSQEAESSTPTSSQQPHDPWKEGMTQMEMRRVRAENMFSRLTLFY QDGHSNSSDEGGDKDDRALCILRGEGQYIFDEAGKRYLDCVNNVAHIGHS HPVLVQAAHAQLQAINTNTRYHHPGRSRYAKKLLGLFPPDLDTVFFVNSG SEANDLALALSRAYTGHEDVVVLDYAYHGHTGTMIDISPYKHHGNSSLPS SSSSSPPSSPAIAPEEKGGEDERKHGHTSSSSSFPKKWVHVIPSPDTYRG PFTTTAAYVSHSSTLLDAAISPPSLPSRHIAAFFAEGVLACGGQVVLPPD YLRGMYSYIRSKGGLCIADEVQTGFGRSGSHMWAYEAQGVIPDIITLGKP IANGFPLAAVITRKEIAESLPHSYFNTFGGSNLAMALGEATLDVVLKEKL QQKAERLGTMLRAMLEGLAQKHPLVGDVRGLGMMLGVELVEDKEAKTPAP AAAAYVLERARQMGVHIQVDGRWENVLKIKPPLAFTEADSHTLVETIDKA LTEFEHKPEEGEMKKEK* back to topmRNA from alignment at chr2:28538..32200- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00100.1 ID=NO02G00100.1|Name=NO02G00100.1|organism=Nannochloropsis oceanica|type=mRNA|length=3663bp|location=Sequence derived from alignment at chr2:28538..32200- (Nannochloropsis oceanica) ACAGGATAGAGAAGGTGTCCTTGACGTCTTTGTCCCTCCCAAATCCTCTG
CACTTTCTCCACGACCATGCAAGGCCCCTCCTTCTTCCTCTTGCTTCTCC
TTGCAGCCAGTATAGGTGGTGGAGTGGTAGCATTAGCGGTAGTGGCTAGG
CATAGACGAAAGGTAAAGAGGACTTTTTCCAAAAAGAGGAGGAAAGCTGT
CTTATTTTGTTTTCAGGGAGTTTTTATATTGCACGTCCTCATGCTTGTCC
GACGCCCATCTACGATACAGACGCTTTTTCCTGGTGCTGATGATCAATCA
GAAGTCAAGATCAAAAACAGACAGTGCAATCGTCCTTTTGGCAGCCAAGA
AGCTGAGTCATCCACTCCAACCTCCTCGCAACAACCCCACGACCCTTGGA
AGGAAGGTATGACCCAGATGGAAATGCGACGCGTCCGAGCCGAGAACATG
TTCAGTAGGCTGACGCTGTTCTACCAGGACGGTCACAGCAATTCCAGTGA
TGAAGGTGGAGACAAGGACGATCGAGCCCTCTGCATCTTGCGAGGAGAGG
GCCAGTACATCTTTGATGAGGCGGGGAAACGGTAGGTCGTTGTAGGGGAT
CGAAGAAAGTAGAATTTCTCAGGGCGAGATTGTAAATCTTCGACCGAAAA
GAAAAGAAGTGAGCAATTCTTTTTCTTGGGGTAACGTTGCTAATTTCCTC
TCCCTCTCCTCTCCCCCCCCTCCCTCCCTCCCTACCTTCCTCTCACCTCA
TCCCTCACCTCCTTCCAACAGGTACCTTGACTGCGTGAACAATGTGGCCC
ATATCGGACACTCTCACCCAGTCCTTGTCCAGGCAGCGCACGCACAACTC
CAGGCTATCAACACCAATACACGGTTCGACAATCCTCTTACTTTCTAAAC
TCGCTTTTACTCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCAATCA
CTGCCCTCCTTTCCATGTCTTCAATATGTCTCAAAACTACACTCACAGAT
TTTGTTTTGATTACCCCTTCTTCCTTCCTTCCCTCCTTACCTTCTTCCCT
TCTTCCCTCCTTCCGTCCTTCCCTCCTTCCGTCCTTCCCTCCCTTCTCCG
TCCTCTAGATACCATCACCCGGGCCGGTCCCGGTATGCCAAGAAGCTCCT
GGGGCTCTTCCCGCCCGACCTCGACACCGTCTTCTTCGTCAACAGCGGTA
AGGAGGTGACAAAGGAGGGAGGAGAGAGTGCAAGTTTGTACTCATCATCC
CTTTTCCACGTTGCTTTTGCACGGGCAGGCTCGGAGGCGAACGACCTGGC
TTTGGCTCTGTCGCGGGCCTACACGGGGTGGGTGAGGCGCAGGAAGGACG
AGAGGGCGAGGAGTCAGGGAGGCATTTATGAATGGGGGAGGGGGGGGAGG
GGACGGACGGACAGACTATATTCACATTTGCACGCACCTCTCCCTTCCTC
CTTCCCTTCCTCCCTCCCGCCCTCGCTCTCGCCCAGGCACGAGGATGTGG
TGGTCCTGGACTATGCCTACCACGGCCACACTGGCACCATGATCGACATA
TCTCCCTACAAGCACCACGGAAACTCCTCTCTCCCGTCTTCTTCATCCTC
CTCCCCACCGTCCTCTCCTGCGATTGCCCCGGAAGAGAAAGGGGGGGAAG
ACGAGCGGAAGCACGGCCACACTTCCTCCTCTTCATCCTTTCCCAAAAAG
TGGGTCCACGTCATTCCCTCTCCCGATACCTACCGAGGGCCCTTCACCAC
CACCGCCGCCTACGTCTCGCACAGTTCTACCCTCCTCGATGCTGCCATCT
CCCCTCCCTCCCTCCCTTCTCGTCATATCGCTGCTTTCTTTGCTGAGGGT
GTTTTAGCTTGTGGTGGACAGGTACGTCCTCCTCCCTCTCCTCCCTCCCC
TTCATCGCCCCTTCTTCCATTCCCTCCCACCGGCGACAGGAGAGCAGTTG
TCTCCTCTCAATTGATGTAACCCCCCACCTCAGTCTCTCTCTCTTTTCCC
TCGCCTTCGCCCTCCTTACCCTTGCCCTAACCCTAACCGTCCTCAGGTTG
TGCTCCCCCCCGACTACCTGCGCGGCATGTATTCCTACATACGCAGCAAG
GGCGGGCTGTGCATTGCCGACGAGGTCCAAACAGGATTCGGCCGTAGTGG
CAGCCACATGTGGGCCTATGAGGCGCAAGGTCTTACTCCCTCCCTCCCTC
CCTCCCTCCTCTCCCTCCTGCCGAATTCCCTCCTCCACGGAAGCTTGAGG
GTGGTGCTCATTTTCTCCCTCCCTACTTCCTTCCCTACCTTCCTCCCTCT
CTAGGCGTGATCCCCGACATTATCACTCTGGGGAAGCCCATCGCCAACGG
CTTTCCCCTCGCGGCCGTCATCACCCGAAAGGAGGTAAGAGAGAGAGTTG
GAGGAAGGGAAGGGAGAGAATAGAAATATGGCAGTTAATCTTGGGGTGTT
TTTCAGGGAAATTACGGACAACATTTTTGGACATTCTCCTCCCTTCCTCC
CCTGCCTTAGATCGCCGAGTCCCTCCCCCATTCTTACTTCAACACCTTTG
GGGGCAGCAACCTTGCCATGGCCTTGGGCGAGGCAACCCTGGACGTGGTC
TTGAAGGAGAAGCTGCAGCAAAAGGCAGAGAGACTGGGGACGATGCTGCG
AGCCATGCTGGAGGGGCTGGCACAGGTAGGTACTCTTCCTCTGTTTCCTC
CGTCCTTGTTTTCCTTTCCCTTGTCCGAAACGAGTGACGAGGGATCCGCT
CTTTTTCCCACTCTCTGCTCCACTCACTATCTTTTCTCTCTTTCAGAAGC
ACCCCCTCGTCGGCGACGTCCGTGGGCTGGGGATGATGCTGGGCGTGGAG
CTGGTGGAGGACAAGGAGGCCAAGACACCTGCACCGGCCGCTGCTGCCTA
CGTACTGGAGCGGGCAAGGCAGATGGGTGTGCACATTCAGGTATGTTCTC
ACGCTCTTAATATTGCTTCTTCCTGTTTTGCTCCTCTTTCCCTATCTCCC
TCTAGTCCCCTTTGTTCTAAAGGCATTTTGTCCATCCTGTCTTTCTTCCT
CCTTTCATTCCCCTGTCCCTAGGTGGACGGGAGATGGGAAAACGTGTTGA
AGATCAAGCCTCCCCTGGCTTTCACGGAGGCCGACTCCCACACCCTTGTC
GAGACGATCGACAAGGCACTGACGGAGTTTGAGCACAAGCCGGAGGAAGG
GGAAATGAAGAAGGAAAAATAGAAGACGATGGCGAGGACACCGACAGCCT
TTCGTTGCTCCTCCGGCGAAATCGACAAAGCAAAGAGGATGAAAAAAAGA
CAATGGGGCAACATATACATAGGATAAAGGAATCGCAGAGAGAGTAAGGG
AGTGCTAGAGTGCTGGAAGGAGGGGAAGAGAGAAATGAGAAGAGCGAATT
GTATGTGATTGTACACAGAAAAAAGAAAAGCAAAAAGGGAGAAGAGACCA
CAGCACACACAGAATATGTTGCATCCACCCAACAAAAGCCATAAAGAAAC
AAAAGTAGGAGTGTCTGTGTATGAGCAATGGGGTGTACATCTTCGCACCC
CAATAGCCCTCTGAACGACGCGGGACCAGGAACGAACAAGATTGTGGCAG
CTCATCTATCATTTTCAAACCCGTCATTTCTTCCTTCTTTTGCTGTTACA
GAGCCTGTTGCGC back to topCoding sequence (CDS) from alignment at chr2:28538..32200- >NO02G00100.1 ID=NO02G00100.1|Name=NO02G00100.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr2:28538..32200- (Nannochloropsis oceanica) ATGCAAGGCCCCTCCTTCTTCCTCTTGCTTCTCCTTGCAGCCAGTATAGG TGGTGGAGTGGTAGCATTAGCGGTAGTGGCTAGGCATAGACGAAAGACGC TTTTTCCTGGTGCTGATGATCAATCAGAAGTCAAGATCAAAAACAGACAG TGCAATCGTCCTTTTGGCAGCCAAGAAGCTGAGTCATCCACTCCAACCTC CTCGCAACAACCCCACGACCCTTGGAAGGAAGGTATGACCCAGATGGAAA TGCGACGCGTCCGAGCCGAGAACATGTTCAGTAGGCTGACGCTGTTCTAC CAGGACGGTCACAGCAATTCCAGTGATGAAGGTGGAGACAAGGACGATCG AGCCCTCTGCATCTTGCGAGGAGAGGGCCAGTACATCTTTGATGAGGCGG GGAAACGGTACCTTGACTGCGTGAACAATGTGGCCCATATCGGACACTCT CACCCAGTCCTTGTCCAGGCAGCGCACGCACAACTCCAGGCTATCAACAC CAATACACGATACCATCACCCGGGCCGGTCCCGGTATGCCAAGAAGCTCC TGGGGCTCTTCCCGCCCGACCTCGACACCGTCTTCTTCGTCAACAGCGGC TCGGAGGCGAACGACCTGGCTTTGGCTCTGTCGCGGGCCTACACGGGGCA CGAGGATGTGGTGGTCCTGGACTATGCCTACCACGGCCACACTGGCACCA TGATCGACATATCTCCCTACAAGCACCACGGAAACTCCTCTCTCCCGTCT TCTTCATCCTCCTCCCCACCGTCCTCTCCTGCGATTGCCCCGGAAGAGAA AGGGGGGGAAGACGAGCGGAAGCACGGCCACACTTCCTCCTCTTCATCCT TTCCCAAAAAGTGGGTCCACGTCATTCCCTCTCCCGATACCTACCGAGGG CCCTTCACCACCACCGCCGCCTACGTCTCGCACAGTTCTACCCTCCTCGA TGCTGCCATCTCCCCTCCCTCCCTCCCTTCTCGTCATATCGCTGCTTTCT TTGCTGAGGGTGTTTTAGCTTGTGGTGGACAGGTTGTGCTCCCCCCCGAC TACCTGCGCGGCATGTATTCCTACATACGCAGCAAGGGCGGGCTGTGCAT TGCCGACGAGGTCCAAACAGGATTCGGCCGTAGTGGCAGCCACATGTGGG CCTATGAGGCGCAAGGCGTGATCCCCGACATTATCACTCTGGGGAAGCCC ATCGCCAACGGCTTTCCCCTCGCGGCCGTCATCACCCGAAAGGAGATCGC CGAGTCCCTCCCCCATTCTTACTTCAACACCTTTGGGGGCAGCAACCTTG CCATGGCCTTGGGCGAGGCAACCCTGGACGTGGTCTTGAAGGAGAAGCTG CAGCAAAAGGCAGAGAGACTGGGGACGATGCTGCGAGCCATGCTGGAGGG GCTGGCACAGAAGCACCCCCTCGTCGGCGACGTCCGTGGGCTGGGGATGA TGCTGGGCGTGGAGCTGGTGGAGGACAAGGAGGCCAAGACACCTGCACCG GCCGCTGCTGCCTACGTACTGGAGCGGGCAAGGCAGATGGGTGTGCACAT TCAGGTGGACGGGAGATGGGAAAACGTGTTGAAGATCAAGCCTCCCCTGG CTTTCACGGAGGCCGACTCCCACACCCTTGTCGAGACGATCGACAAGGCA CTGACGGAGTTTGAGCACAAGCCGGAGGAAGGGGAAATGAAGAAGGAAAA ATAG back to top
|