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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr2 | genome | chr2:19880..22579 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00080.1 vs.
Match: EWM30673.1 (hypothetical protein Naga_100091g6 [Nannochloropsis gaditana]) HSP 1 Score: 438.0 bits (1125), Expect = 3.500e-119 Identity = 218/272 (80.15%), Postives = 255/272 (93.75%), Query Frame = 0
Query: 158 GCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSFDDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAMMEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFKEISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAAANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAASDPDKWKDIMRENARLMYGSADEKKNDEL 430
G LLLL++SCLLL QAQWGM KK KK DGAVRPEDVQGGLSFDDMQKIAKHSGGK+E++PF++LKAMD+D+G++DMK++VEEAMNSPE+ AMM+DP LLKKALRESPLFENLPGL+KILE+PE DDPE LKE+F+KGMD+FKE+SDTI+D+V+DEGKREE+M ELLKNLDP EQ+KMKAL++G+++A+EEAAANLAE+FA MG E KRSLDDP+KME AR+NFLENE+WL+TFEDPDLRAAASDPDKWKDIMRENARLMYGSADE KNDEL
Sbjct: 9 GRLLLLLLSCLLLIVQAQWGM-KKVKKEDGAVRPEDVQGGLSFDDMQKIAKHSGGKEELNPFDMLKAMDLDIGDLDMKSVVEEAMNSPEIQAMMDDPVLLKKALRESPLFENLPGLEKILEKPEFDDPEKLKELFQKGMDEFKEVSDTILDMVDDEGKREEVMAELLKNLDPSEQRKMKALLAGEDDAIEEAAANLAEIFAGMGNELKRSLDDPEKMENARKNFLENEEWLNTFEDPDLRAAASDPDKWKDIMRENARLMYGSADE-KNDEL 278
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
GGTAATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAG
CAGGCTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGT
ATATGTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTT
GGCGATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAG
CTCTTACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAA
TCACTCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTC
TATCCTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTT
GCTCCCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACC
GCCCTTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCAC
CATGCACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCT
CCTGTCTGTTGCTGACCGCGCAAGCGCAGTGGGGCATGGGGAAGAAGGCG
AAGAAGGGCGACGGCGCAGTGCGGCCTGAAGATGTGCAAGGCGGTCTTTC
CTTTGATGACATGCAGAAGATTGCCAAGCACTCGGGCGGGAAGAAGGAGA
TGGATCCATTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTC
GATATGAAGGCCATGGTCGAGGAGGCAATGAACTCGCCAGAGGTTCTGGC
CATGATGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGC
TTTTTGAGAATCTACCGGGCTTGGACAAAATTCTAGAAAGGCCCGAGATG
GATGACCCTGAGGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTT
CAAGGAGATTTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGC
GGGAGGAGATCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAG
AAGAAAATGAAGGCCCTGGTGAGCGGAGATGAAAACGCAGTGGAGGAGGC
GGCGGCGAACCTGGCCGAGGTGTTTGCAAGCATGGGCACTGAGTTCAAAA
GGTCTCTGGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTC
GAGAACGAGGACTGGTTGGACACATTCGAGGACCCAGATCTACGGGCAGC
TGCCAGTGACCCCGACAAGTGGAAGGACATCATGCGGGAGAACGCCCGCC
TCATGTACGGCTCGGCGGACGAGAAGAAAAACGACGAGCTTTAGGTAATA
ATGACGGCCGGATGGAATACGGATGGAAAGGAGGAGGCTAGAAGGGGAAA
AGAATCTGACGTGTGTAGATAAAAAAAAATCGAGGCACAGTGAAAGAAAG
GATGACAGATGGGAGAAGAGACGTACAATCCCAGTCCCAAAGAGAAAGCA
ACAACAACTAACTCATATAGACGGCAT back to topprotein sequence of NO02G00080.1 >NO02G00080.1-protein ID=NO02G00080.1-protein|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MGGLYDKEKQAFSTQAGYGHEDSVSCCLYAPCICFGRVYGVEVFALQCLA
MRARARRGREKVGHKALTVRNDSSDAHKRPHKSLPHTTHSMSCLFKYRSI
LMHRSQSLVVYRCCTCSLYHQPPARFFSPHATALLATTTTHRAHETTSTM
HPHSLLPGCLLLLIVSCLLLTAQAQWGMGKKAKKGDGAVRPEDVQGGLSF
DDMQKIAKHSGGKKEMDPFELLKAMDMDLGNVDMKAMVEEAMNSPEVLAM
MEDPALLKKALRESPLFENLPGLDKILERPEMDDPEALKEIFRKGMDDFK
EISDTIIDLVNDEGKREEIMTELLKNLDPEEQKKMKALVSGDENAVEEAA
ANLAEVFASMGTEFKRSLDDPDKMEKARQNFLENEDWLDTFEDPDLRAAA
SDPDKWKDIMRENARLMYGSADEKKNDEL* back to topmRNA from alignment at chr2:19880..22579- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr2:19880..22579- (Nannochloropsis oceanica)
GGTAATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAG
CAGGCTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGT
ATATGTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTT
GGCGATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAG
CTCTTACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAA
TCACTCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTC
TATCCTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTT
GCTCCCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACC
GCCCTTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCAC
CATGCACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCT
CCTGTCTGTTGCTGACCGCGCAAGCGCAGGTGCGTTTTTGGGCAAAGATG
GAGCGTGGGAAGGAGGGGGAAGCTCTTCATCCTCGTCGTCGTGACCTATT
GTGGATACCATCCCATCCAACGCGTGTTCATTCACTCACGCTACCCTTAT
AACTGTGATAGTGGGGCATGGGGAAGAAGGCGAAGAAGGGCGACGGCGCA
GTGCGGCCTGAAGATGTGCAAGGCGGTGAGGCCATATGTTTGGTGGAATG
GAGGAAAGAGGGAGGAAGAGAGGGACAGAGGGGTACACGCACATTCATGA
CACCCTCCACTTCTCTCACGCTTTGCCTCAGGTCTTTCCTTTGATGACAT
GCAGAAGATTGCCAAGCACTCGGGCGGGTACGTACACGTGCGGGCGGTCG
AAGGGTTGGGGCATATGCGAATCTTGTACAAATCCTCCCTCCCTCCCTCC
CTCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCT
CCCTCCCTCGCATTGCCTTGACTCGTTACAGGAAGAAGGAGATGGATCCA
TTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTCGATATGAA
GGCCATGGTCGAGGAGGCAATGAACGTACGTCCCCCTCCCTCCCTCCCTC
CCTCTTTCCGTCCCTCCCTCCCTTCCTCGCATGCCACATGGACTCATTTG
TCCGCCTTCTTAATCTCATAATAAACAGTCGCCAGAGGTTCTGGCCATGA
TGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGCTTTTT
GAGAATCTACCGGGCTTGGACAAGTGAGGAAGTGCGGGATTGAGGGAGTG
GTGGTGGAGAGAGTGGGAAGCATTGGATAAAATGAGGCGGGTTTGGACGA
ATCAGTGATGGAGATATCACACAAAACTGAGAGCGGATCAATCGCTGTGA
AGGGGAGTATAGAAAGCGTGTTGTACGAGTGTATTGATCCCCTCCTCCTT
CCTTCCTTCCTCCCCTCCCTCTTTCCCTCCCTCCCTCCCACCCTTCCTCT
CACTACTCCACGCTCAGAATTCTAGAAAGGCCCGAGATGGATGACCCTGA
GGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTTCAAGGAGGTAA
ACACCCCTCCCTCAGCCCCTCCCTCCCTCCCTCCCTCCACGGTCCATCCA
CTCGCCCAACCATCCCTCCCCCCTCGTCCCTCCTCTCTCATTCTCCAGAT
TTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGCGGGAGGAGA
TCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAGAAGGTAGGC
AAGCGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGTGGGAGGGC
GGGAGGGCGGAGAAGCAAGGATGCCTTACTGATGTGGACCCTCTCTTCAT
TTTCGACGCATTGACAGAAAATGAAGGCCCTGGTGAGCGGAGATGAAAAC
GCAGTGGAGGAGGCGGCGGCGAACCTGGCCGAGGTGTTTGCAAGCATGGG
CACTGAGGTGGGGAGGGAGGGAAGAGGGAGGGAGAGAGGGTTTGAATAGA
AGCGAGAGAGACATAAATCCCTCACAACGCTTGCGTGCTTGACTCATTCA
TCCATCCACCCTCTGTGTTTGCTCATTCATCGACAGTTCAAAAGGTCTCT
GGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTCGAGAACG
AGGTGCGTGTGTCCGTCTGCATGTAAACTAAGGGGAGGGAAAGGAGCAGA
AAAAGACGAGAAAGAGGGCGACTTGGATTCAGATGCATTTAACGAGCAGC
TAACTCACAATCCCTCTCTCTCTCTCTGTCAGGACTGGTTGGACACATTC
GAGGACCCAGATCTACGGGCAGCTGCCAGTGACCCCGACAAGTGGAAGGA
CATCATGCGGGAGAACGCCCGCCTCATGTACGGCTCGGCGGACGAGAAGA
AAAACGACGAGCTTTAGGTAATAATGACGGCCGGATGGAATACGGATGGA
AAGGAGGAGGCTAGAAGGGGAAAAGAATCTGACGTGTGTAGATAAAAAAA
AATCGAGGCACAGTGAAAGAAAGGATGACAGATGGGAGAAGAGACGTACA
ATCCCAGTCCCAAAGAGAAAGCAACAACAACTAACTCATATAGACGGCAT
back to topCoding sequence (CDS) from alignment at chr2:19880..22579- >NO02G00080.1 ID=NO02G00080.1|Name=NO02G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr2:19880..22579- (Nannochloropsis oceanica)
ATGGGTGGACTCTACGACAAGGAAAAGCAGGCATTTTCGACTCAAGCAGG
CTATGGCCATGAGGATAGCGTCTCATGTTGCCTTTATGCACCGTGTATAT
GTTTTGGGCGCGTGTACGGTGTGGAAGTGTTCGCCCTTCAATGCTTGGCG
ATGCGAGCGCGCGCGCGACGCGGGCGGGAGAAAGTAGGGCACAAAGCTCT
TACGGTACGAAATGACTCGTCGGACGCGCACAAAAGACCACACAAATCAC
TCCCCCACACCACGCACAGTATGAGTTGTCTCTTTAAATACCGCTCTATC
CTAATGCATCGGAGCCAGAGCCTGGTAGTCTATCGGTGCTGCACTTGCTC
CCTCTACCACCAGCCTCCCGCCCGCTTTTTCTCACCACATGCGACCGCCC
TTCTAGCTACAACCACAACACACAGAGCTCACGAGACGACCAGCACCATG
CACCCACACAGCCTTCTCCCGGGCTGTCTACTCCTACTCATCGTCTCCTG
TCTGTTGCTGACCGCGCAAGCGCAGTGGGGCATGGGGAAGAAGGCGAAGA
AGGGCGACGGCGCAGTGCGGCCTGAAGATGTGCAAGGCGGTCTTTCCTTT
GATGACATGCAGAAGATTGCCAAGCACTCGGGCGGGAAGAAGGAGATGGA
TCCATTCGAGCTGCTGAAGGCGATGGACATGGACCTGGGTAACGTCGATA
TGAAGGCCATGGTCGAGGAGGCAATGAACTCGCCAGAGGTTCTGGCCATG
ATGGAAGATCCAGCTCTTCTCAAAAAGGCGCTGCGGGAGTCACCGCTTTT
TGAGAATCTACCGGGCTTGGACAAAATTCTAGAAAGGCCCGAGATGGATG
ACCCTGAGGCCCTAAAAGAGATTTTTCGCAAGGGCATGGACGATTTCAAG
GAGATTTCTGACACCATCATCGACCTGGTGAATGACGAGGGCAAGCGGGA
GGAGATCATGACCGAGCTTCTCAAGAACCTAGACCCGGAGGAGCAGAAGA
AAATGAAGGCCCTGGTGAGCGGAGATGAAAACGCAGTGGAGGAGGCGGCG
GCGAACCTGGCCGAGGTGTTTGCAAGCATGGGCACTGAGTTCAAAAGGTC
TCTGGACGACCCCGACAAGATGGAGAAGGCCCGGCAGAACTTCCTCGAGA
ACGAGGACTGGTTGGACACATTCGAGGACCCAGATCTACGGGCAGCTGCC
AGTGACCCCGACAAGTGGAAGGACATCATGCGGGAGAACGCCCGCCTCAT
GTACGGCTCGGCGGACGAGAAGAAAAACGACGAGCTTTAG back to top
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