NO01G05620.2, NO01G05620.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05620.2
Unique NameNO01G05620.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1848
Alignment locationchr1:1559593..1562460 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1559593..1562460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05620.2 vs.
Match: OCK86037.1 (hypothetical protein K432DRAFT_388149 [Lepidopterella palustris CBS 459.81])

HSP 1 Score: 183.3 bits (464), Expect = 1.900e-42
Identity = 106/242 (43.80%), Postives = 146/242 (60.33%), Query Frame = 0 
Query:  204 PLVGTCMEVEKEYLRSMEEVDPSTVRPLSVLREALHRVKAHWTINEDYPYACSQLKSIRQDLRVQHIEDAFTVHVYETHARIALEAGDLGEFLVAAARLDDIRRLHASSPSSFPTSSSSSSISSSAEFLAYRLLHALYLAHPAQIRLLLLQAREEEEIWCHPAIVHARAVVSADAQGNFHRFFHLYTRAPHMSAYLMDFLLLRMRRLALSRVLVAYGPETLPLLFLSQELGFETEAECREYV 446
            P+VGTC E+EK+Y R      P TVRPL VL + L  +K  W    +Y Y C Q KS+RQDL VQHI++AFTV+VYE HARIALE GDLGE+     +L   R L++ +    P           AEFLAYR+L+ ++  +   +  +L      ++     A+ HA  V SA A GN+HRFF LY  AP+M +YLMD  + R R  AL+ +  AY P+ + + FL++ELGFE++ EC E++
Sbjct:  252 PVVGTCQELEKKYFRLTAPPKPETVRPLVVLEQTLELLKKKWRQENNYGYICDQFKSLRQDLTVQHIKNAFTVNVYEIHARIALEKGDLGEYNQCQTQL---RALYSQNLGGNP-----------AEFLAYRILYFIHTCNRTDMNDVLADLTPADK--SQHAVQHALKVRSALAMGNYHRFFQLYLDAPNMGSYLMDMFIDRERLAALANICKAYKPD-VKIRFLTEELGFESDPECIEFL 476
The following BLAST results are available for this feature:
BLAST of NO01G05620.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OCK86037.11.900e-4243.80hypothetical protein K432DRAFT_388149 [Lepidoptere... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05620NO01G05620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05620.2NO01G05620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05620.2.cds1NO01G05620.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05620.2.cds2NO01G05620.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05620.2.cds3NO01G05620.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05620.2.cds4NO01G05620.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05620.2.cds5NO01G05620.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05620.2.cds6NO01G05620.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05620.2 ID=NO01G05620.2|Name=NO01G05620.2|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
AGGTCGTCCGGGATACTTTTGTACAAAACCTCCTGGTGTCGAGGATAGCC
GCCCTGCCAAAATCTGACCTAGAGTGATGGTTTTCTCGTCCTGCTTCTCG
AACGATGATTTCAATTTATTTGATGGGCGGGCGAGAGTAGGAGAAAATGC
CAGCATCTCTGTCGTGGAGGGGGAGGCAGATGGCGAGCCTCTTGCTAAAG
CGTGTGATCTGATCGCCGCCTTGCTCTAACACGCACTAATTGGCACAACG
GCACATCGCTTTGCATGCAAACACAGGCACACACCATGAAGGAAAAAAAC
GAGAAAATTAAGAAGAAGGTCAAGAAGCGGAAACATCACAAGGTACGAAG
AGATGATGGGAAGACTGGCAGCAGAGCCGGGGCCTGTAAAGCGCGTGTTT
ACTTCCCGCCCCATCCCTTCCACGTACACCATCAGGAAGAGGAAGAAGAC
GGCTGTGACGATGCCAAGGAGGGACATAAGCTTGACAAGAAGCTTCGGAA
GTTGCTGCATCTCGCCCCTGCCACGGCGCAGGCGTGTCATGCTCCCTCCT
CCTTTCCGACACCACCCAAGGGGCCGCCTCCTCCCCGTCTCCCTCCCGTA
GCCCCACTACCACCTCAAGTACCGCATCCGACTGGCGTTACTAACCAAGT
CAAAGGCGTGAATTTTTCGACTGCTCCTAAATCAAACGTCCCAATCCCAC
TTCTCCGCGCTGACGCCGAGGAGATCCGCCGACGCCAAGCCAGGGCACAG
CGCTTTGCCGCCTCTTCCCCCCTCGCGTCCTCCCGCCCTTCCACCTCCTC
CTCTTCGACTTTCTCCTCGCAAGGAAATAGAAATGGGAAAGATGTCAAAG
AGACATATCACAAAAGGACGCGGCCTCTGGTAGGCACGTGCATGGAGGTG
GAGAAGGAGTACCTGCGGTCGATGGAGGAGGTTGACCCAAGCACCGTGAG
GCCGCTCAGCGTGCTGCGTGAGGCCCTGCACCGGGTGAAGGCTCATTGGA
CTATAAATGAAGACTATCCATACGCCTGCTCCCAATTGAAGAGCATTCGA
CAGGACCTGCGGGTGCAGCACATCGAAGATGCCTTCACAGTGCATGTGTA
TGAGACGCATGCCCGGATTGCCCTGGAGGCCGGGGATTTAGGCGAGTTCT
TGGTGGCTGCGGCCAGGCTGGACGACATTAGGCGCCTTCACGCCTCCTCC
CCTTCTTCCTTCCCTACCTCCTCCTCCTCCTCCTCAATCTCGTCTTCAGC
CGAGTTCCTGGCCTACCGCCTCCTCCATGCCCTCTACCTCGCCCACCCCG
CGCAGATCCGCCTCCTTTTGCTCCAGGCACGGGAGGAGGAAGAGATATGG
TGCCACCCGGCGATTGTGCATGCGCGAGCTGTCGTAAGTGCGGATGCCCA
AGGGAACTTCCATCGCTTCTTTCACCTCTACACCCGGGCGCCCCACATGT
CCGCCTACCTTATGGACTTCCTCCTTCTACGCATGCGGCGCCTCGCTCTG
TCCCGTGTGCTTGTTGCGTATGGTCCCGAAACCCTCCCCCTCCTCTTCCT
CAGCCAGGAGCTGGGGTTCGAAACGGAGGCAGAATGCAGGGAGTATGTGG
AGGGGAAGGAGGGGTGGGTGGTAAGGAGGGAGGGAGTGAGGGGGGGCCGG
TGGATGGTGCACTTGAGGGAGACGAGGATGAGGAGGAAAGATGGTGGAAG
AAAAATAGTGGAGGGAAGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGA
GGGAGCAGGGTGAAAGGATGAAGATGAAAATGAAAAAGGAGAAGATAAAA
AAGATGAAGAGGAAGGAAGAGACGAAGAAGAAAAAGGGCAGCCATTGA
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protein sequence of NO01G05620.2

>NO01G05620.2-protein ID=NO01G05620.2-protein|Name=NO01G05620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MQTQAHTMKEKNEKIKKKVKKRKHHKVRRDDGKTGSRAGACKARVYFPPH
PFHVHHQEEEEDGCDDAKEGHKLDKKLRKLLHLAPATAQACHAPSSFPTP
PKGPPPPRLPPVAPLPPQVPHPTGVTNQVKGVNFSTAPKSNVPIPLLRAD
AEEIRRRQARAQRFAASSPLASSRPSTSSSSTFSSQGNRNGKDVKETYHK
RTRPLVGTCMEVEKEYLRSMEEVDPSTVRPLSVLREALHRVKAHWTINED
YPYACSQLKSIRQDLRVQHIEDAFTVHVYETHARIALEAGDLGEFLVAAA
RLDDIRRLHASSPSSFPTSSSSSSISSSAEFLAYRLLHALYLAHPAQIRL
LLLQAREEEEIWCHPAIVHARAVVSADAQGNFHRFFHLYTRAPHMSAYLM
DFLLLRMRRLALSRVLVAYGPETLPLLFLSQELGFETEAECREYVEGKEG
WVVRREGVRGGRWMVHLRETRMRRKDGGRKIVEGRAEEEEEEEEEREQGE
RMKMKMKKEKIKKMKRKEETKKKKGSH*
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mRNA from alignment at chr1:1559593..1562460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05620.2 ID=NO01G05620.2|Name=NO01G05620.2|organism=Nannochloropsis oceanica|type=mRNA|length=2868bp|location=Sequence derived from alignment at chr1:1559593..1562460- (Nannochloropsis oceanica)
AGGTCGTCCGGGATACTTTTGTACAAAACCTCCTGGTGTCGAGGATAGCC
GCCCTGCCAAAATCTGACCTAGAGTGATGGTTTTCTCGTCCTGCTTCTCG
AACGATGATTTCAATTTATTTGATGGGCGGGCGAGAGTAGGAGAAAATGC
CAGCATCTCTGTCGTGGAGGGGGAGGCAGATGGCGAGCCTCTTGCTAAAG
CGTGTGATCTGATCGCCGCCTTGCTCTAACACGCACTAATTGGCACAACG
GCACATCGCTTTGCATGCAAACACAGGCACACACCATGAAGGAAAAAAAC
GAGAAAATTAAGAAGAAGGTCAAGAAGCGGAAACATCACAAGGTACGAAG
AGATGATGGGAAGACTGGCAGCAGAGCCGGGGCCTGTAAAGCGCGTGTTT
ACTTCCCGCCCCATCCCTTCCACGTACACCATCAGGAAGAGGAAGAAGAC
GGCTGTGACGATGCCAAGGAGGGACATAAGCTTGACAAGAAGCTTCGGAA
GTTGCTGCATCTCGCCCCTGCCACGGCGCAGGCGTGTCATGCTCCCTCCT
CCTTTCCGACACCACCCAAGGGGCCGCCTCCTCCCCGTCTCCCTCCCGTA
GCCCCACTACCACCTCAAGTACCGCATCCGACTGGCGTTACTAACCAAGT
CAAAGGCGTGAATTTTTCGACTGCTCCTAAATCAAACGTCCCAATCCCAC
TTCTCCGCGCTGACGCCGAGGAGATCCGCCGACGCCAAGCCAGGGCACAG
CGCTTTGCCGCCTCTTCCCCCCTCGCGTCCTCCCGCCCTTCCACCTCCTC
CTCTTCGACTTTCTCCTCGCAAGGAAATAGAAATGGGAAAGATGTCAAAG
AGACATATCACAAAAGGACGCGGCCTCTGGTAGGCACGTGCATGGAGGTG
GAGAAGGAGTACCTGCGGTCGATGGAGGAGGTTGACCCAAGCACCGTGAG
GCCGCTCAGCGTGCTGCGTGAGGTGGGGAGGGAGGGAGAGAGGAAGGAAG
GGAGGGAGGAAGGAAGTGAGGAAGGGAGGGGGAGAGTGCATTACATGACA
TGGCTTATCGCATTAACTTACATTACGTTACATACATTACACGTGTGTAC
GCATCAAATCACACTTCCCCCCTTTCTTTCAACCTCCTCCCTCCCTCCCT
CTCTCTCTCCCTCCCTCCTTCCCCGCCCCCCGTCCTGTCCTCTCGCAGGC
CCTGCACCGGGTGAAGGCTCATTGGACTATAAATGAAGACTATCCATACG
CCTGCTCCCAATTGAAGAGCATTCGACAGGACCTGCGGGTGCAGCACATC
GAAGATGCCTTCACAGTGCATGTAGGGTGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGAAGGGAGAGGGGAAGGGA
GGAAGGGCGGAGGAGAGAGAGGGGGGTTGAAGGGCAGAAAGTTAAATAAC
TAAGATATTTACACACGAGGATAAGGTCGTGATTCACCATCCCCACTCAC
TCAATGACTGGATGGATGCATGGATGCATGGACAGGTGTATGAGACGCAT
GCCCGGATTGCCCTGGAGGCCGGGGATTTAGGCGAGTTCTTGGTGGCTGC
GGCCAGGCTGGACGACATTAGGTGCGTGCGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGAGCTTGATGGTCCCTGCCGACGGT
CTTCACTTCCCTTTTTTCGTTCTTTAGCTTCCGATCCATTCCGTCATCAT
CATCTTATAGCTCACGGTATGATCGTCGTCGGATGCCTCCTTCTTATTCT
CCCTCCCTCCCTACGCAGGCGCCTTCACGCCTCCTCCCCTTCTTCCTTCC
CTACCTCCTCCTCCTCCTCCTCAATCTCGTCTTCAGCCGAGTTCCTGGCC
TACCGCCTCCTCCATGCCCTCTACCTCGCCCACCCCGCGCAGATCCGCCT
CCTTTTGCTCCAGGCACGGGAGGAGGAAGAGATATGGTGCCACCCGGCGA
TTGTGCATGTACGTTACGATCGTGGAGGAGGGAGAAAGGAAGAGAAGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGG
AGGGGTATCTGTGCTGCTTCGACCGACCATCTCCCCTCTCGCACTCTTCC
CCCTATCCCTACTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCT
CCTCTCCCTCCTCCTCCTCCTCCCCCTTCCTGTACCCCAGGCGCGAGCTG
TCGTAAGTGCGGATGCCCAAGGGAACTTCCATCGCTTCTTTCACCTCTAC
ACCCGGGCGCCCCACATGTCCGCCTACCTTATGGACTTCCTCCTTCTGTA
AGTCTGCCATCCATCCATCCATCCCTCCCTCCCTCCCTTCCTCCCCCCTA
TCGGAAGCGGGCACGTGCCGTGCTCTCTCCTCTCTTACTCGCCTACCATC
CTCCCCCTTCCTCCCTTCTTCCCTCCCTCCCCCTTTGTATCGTCGCAGAC
GCATGCGGCGCCTCGCTCTGTCCCGTGTGCTTGTTGCGTATGGTCCCGAA
ACCCTCCCCCTCCTCTTCCTCAGCCAGGAGCTGGGGTTCGAAACGGAGGC
AGAATGCAGGGAGTATGTGGAGGGGAAGGAGGGGTGGGTGGTAAGGAGGG
AGGGAGTGAGGGGGGGCCGGTGGATGGTGCACTTGAGGGAGACGAGGATG
AGGAGGAAAGATGGTGGAAGAAAAATAGTGGAGGGAAGGGCGGAGGAGGA
GGAGGAGGAGGAGGAGGAGAGGGAGCAGGGTGAAAGGATGAAGATGAAAA
TGAAAAAGGAGAAGATAAAAAAGATGAAGAGGAAGGAAGAGACGAAGAAG
AAAAAGGGCAGCCATTGA
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Coding sequence (CDS) from alignment at chr1:1559593..1562460-

>NO01G05620.2 ID=NO01G05620.2|Name=NO01G05620.2|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at chr1:1559593..1562460- (Nannochloropsis oceanica)
ATGCAAACACAGGCACACACCATGAAGGAAAAAAACGAGAAAATTAAGAA
GAAGGTCAAGAAGCGGAAACATCACAAGGTACGAAGAGATGATGGGAAGA
CTGGCAGCAGAGCCGGGGCCTGTAAAGCGCGTGTTTACTTCCCGCCCCAT
CCCTTCCACGTACACCATCAGGAAGAGGAAGAAGACGGCTGTGACGATGC
CAAGGAGGGACATAAGCTTGACAAGAAGCTTCGGAAGTTGCTGCATCTCG
CCCCTGCCACGGCGCAGGCGTGTCATGCTCCCTCCTCCTTTCCGACACCA
CCCAAGGGGCCGCCTCCTCCCCGTCTCCCTCCCGTAGCCCCACTACCACC
TCAAGTACCGCATCCGACTGGCGTTACTAACCAAGTCAAAGGCGTGAATT
TTTCGACTGCTCCTAAATCAAACGTCCCAATCCCACTTCTCCGCGCTGAC
GCCGAGGAGATCCGCCGACGCCAAGCCAGGGCACAGCGCTTTGCCGCCTC
TTCCCCCCTCGCGTCCTCCCGCCCTTCCACCTCCTCCTCTTCGACTTTCT
CCTCGCAAGGAAATAGAAATGGGAAAGATGTCAAAGAGACATATCACAAA
AGGACGCGGCCTCTGGTAGGCACGTGCATGGAGGTGGAGAAGGAGTACCT
GCGGTCGATGGAGGAGGTTGACCCAAGCACCGTGAGGCCGCTCAGCGTGC
TGCGTGAGGCCCTGCACCGGGTGAAGGCTCATTGGACTATAAATGAAGAC
TATCCATACGCCTGCTCCCAATTGAAGAGCATTCGACAGGACCTGCGGGT
GCAGCACATCGAAGATGCCTTCACAGTGCATGTGTATGAGACGCATGCCC
GGATTGCCCTGGAGGCCGGGGATTTAGGCGAGTTCTTGGTGGCTGCGGCC
AGGCTGGACGACATTAGGCGCCTTCACGCCTCCTCCCCTTCTTCCTTCCC
TACCTCCTCCTCCTCCTCCTCAATCTCGTCTTCAGCCGAGTTCCTGGCCT
ACCGCCTCCTCCATGCCCTCTACCTCGCCCACCCCGCGCAGATCCGCCTC
CTTTTGCTCCAGGCACGGGAGGAGGAAGAGATATGGTGCCACCCGGCGAT
TGTGCATGCGCGAGCTGTCGTAAGTGCGGATGCCCAAGGGAACTTCCATC
GCTTCTTTCACCTCTACACCCGGGCGCCCCACATGTCCGCCTACCTTATG
GACTTCCTCCTTCTACGCATGCGGCGCCTCGCTCTGTCCCGTGTGCTTGT
TGCGTATGGTCCCGAAACCCTCCCCCTCCTCTTCCTCAGCCAGGAGCTGG
GGTTCGAAACGGAGGCAGAATGCAGGGAGTATGTGGAGGGGAAGGAGGGG
TGGGTGGTAAGGAGGGAGGGAGTGAGGGGGGGCCGGTGGATGGTGCACTT
GAGGGAGACGAGGATGAGGAGGAAAGATGGTGGAAGAAAAATAGTGGAGG
GAAGGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAGCAGGGTGAA
AGGATGAAGATGAAAATGAAAAAGGAGAAGATAAAAAAGATGAAGAGGAA
GGAAGAGACGAAGAAGAAAAAGGGCAGCCATTGA
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Synonyms
Publications