NO01G05520.3, NO01G05520.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05520.3
Unique NameNO01G05520.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1488
Alignment locationchr1:1515253..1517537 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1515253..1517537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05520.3 vs.
Match: EWM22766.1 (Protein of unknown function DUF1350 [Nannochloropsis gaditana])

HSP 1 Score: 456.4 bits (1173), Expect = 8.100e-125
Identity = 254/361 (70.36%), Postives = 295/361 (81.72%), Query Frame = 0 
Query:    1 MMRMRTNTPTSSSSSSPFLPSSISAFRPSSTRLAVTVEVVTDDDLSS--SLR-RGRGREGRQAGGGEWRKVDDEVEVLFPEAFAQPKGIIHFVGGAVVGAFPRAAYGPLLERLARQGYCIIATSLPFSLFDHAAGARLLAVAYARGENYVEGVYGPRIRQQLPVFGLGHSLGAKMHVLLGSSPPSLPPSSSSSSPSPYRSKRRANVLVAFNNFSAQESVPLLDEMRNLGLSIGGMGLSSKLEDVSRLITSLSALDLSGASSPNSRRETNSGFDLASKGLNMAMSFLSSLPTDIPSDFTPSPDETWALLSSPP----PSAPASSPFYSVPSNLVVSFDKDTIDQSPRLLSLLQQRGREGGRG 355
            M R RT   +SSS+SS   P S   FR S+TRL    +V  +DDLSS  SLR + R + G Q  GGEW++VD+ V+V FPEA A PKG++HFVGGAVVGAFPRAAYGPLLERL RQGYC+IAT+LPFSLFDHAAGAR LA+AYARGE YVEGVYGPR+RQQLPVFGLGHSLGAKM +LLGS PPSLP  SSSS+P+     RRANVLVAFNNFSA++SVPLL+E+R LG S+ GM LS KLED+SR+++SL+AL+LSGASSPN++RET SGFDLASKGL MAM FLSSLPT    DFTPSP+ETWALLSSPP     S P+SSP Y+V +NLVVSFDKDTIDQS  L++LL++RGREGGRG
Sbjct:   71 MARFRTCMSSSSSTSSAAWPPS--RFRASTTRLTARAQVFDEDDLSSAPSLRTQPRTKPGTQ--GGEWQRVDEGVDVFFPEASAPPKGLVHFVGGAVVGAFPRAAYGPLLERLGRQGYCVIATALPFSLFDHAAGARALAMAYARGEAYVEGVYGPRVRQQLPVFGLGHSLGAKMLILLGSPPPSLPSFSSSSAPT--AGPRRANVLVAFNNFSAKQSVPLLEELRELGQSVAGMDLSGKLEDISRMVSSLAALNLSGASSPNAQRETTSGFDLASKGLTMAMDFLSSLPTSGVPDFTPSPEETWALLSSPPLFPSSSLPSSSPSYAVLNNLVVSFDKDTIDQSEELVALLRERGREGGRG 425
The following BLAST results are available for this feature:
BLAST of NO01G05520.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22766.18.100e-12570.36Protein of unknown function DUF1350 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05520NO01G05520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05520.3NO01G05520.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05520.3.cds1NO01G05520.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05520.3.cds2NO01G05520.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05520.3.cds3NO01G05520.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05520.3.cds4NO01G05520.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05520.3.cds5NO01G05520.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05520.3 ID=NO01G05520.3|Name=NO01G05520.3|organism=Nannochloropsis oceanica|type=mRNA|length=1488bp
TGCAAAAAATCCCCTTACACCCTCCACTCAATTCGTATTCCCACCTTATC
TCATTTTTACATTTTTTTCTCTTTTTATCGCCTCTTTCTTTCCAAAACCT
TCACCCGGCCAGCGGGCCGCGGTATTCCCCGACAGCGGTCCACAACCATG
ATGCGCATGCGCACCAATACCCCGACCTCCTCCTCCTCCTCCTCTCCTTT
CCTTCCTTCCTCCATCTCTGCCTTCCGTCCTTCCTCCACCCGCCTCGCCG
TCACGGTCGAAGTCGTCACAGACGACGATTTGTCCTCCTCCCTGCGTCGT
GGGAGGGGGAGGGAAGGAAGGCAGGCAGGAGGGGGGGAATGGAGAAAAGT
TGACGATGAGGTGGAAGTATTATTTCCTGAGGCCTTTGCTCAACCGAAGG
GCATCATTCACTTCGTGGGAGGGGCAGTGGTGGGCGCCTTTCCCCGAGCG
GCATATGGGCCCTTGTTGGAGCGGTTAGCGAGGCAGGGGTACTGTATCAT
CGCCACATCCCTCCCCTTCTCCCTCTTCGACCACGCGGCGGGCGCGCGTT
TGCTGGCAGTGGCCTACGCGCGAGGAGAGAATTATGTCGAGGGGGTGTAC
GGGCCTCGGATTCGGCAGCAGCTCCCCGTCTTCGGCCTCGGCCACTCCCT
TGGCGCCAAAATGCACGTCCTCCTCGGGTCCTCCCCTCCCTCCCTCCCTC
CCTCCTCCTCCTCCTCCTCCCCCTCCCCCTACCGCAGCAAGCGTCGGGCG
AATGTGTTGGTGGCTTTTAACAATTTTTCGGCTCAGGAATCAGTGCCCCT
GCTGGACGAGATGAGGAACCTGGGTTTATCTATAGGGGGCATGGGCCTAA
GCAGCAAGCTGGAAGACGTTTCGCGCCTCATAACTTCCCTCTCCGCATTG
GATCTATCCGGGGCCTCCTCGCCCAATTCGCGAAGAGAAACTAATAGCGG
TTTCGACCTCGCATCGAAAGGCCTCAATATGGCTATGAGCTTCCTCTCCT
CCCTCCCAACCGATATCCCCTCCGACTTCACCCCCTCGCCCGACGAAACA
TGGGCCCTCCTCTCCTCTCCCCCTCCCTCGGCCCCTGCCTCCTCCCCCTT
CTACAGCGTGCCCTCCAACCTCGTCGTCTCCTTCGACAAGGACACAATCG
ATCAGTCTCCCCGACTCCTCTCTCTCCTTCAGCAGCGAGGGAGGGAAGGA
GGAAGGGGGGAGGAAGGGTGGAGAGTGTCAGGCTGGCAGGAACGCACTTG
ACGCCCAACACACCGCAGGGCGTGTTGGACGCCGAGGTTGAGGGCCGGGG
GGAGGGAGGGCAGGTGCAGGATGCCTACGGTAGAAAATGGGTGGAGGAAG
GGGGGGCGGGAGAAGCCGTAGAAGGAGCTGGAGGAGGAGAAGGAGCAATA
GGAGGAGCAGCGGCGCAGGCAGTGGCACGAACGGCGAAGCGGGAGTTGGA
TGCGTAGGTCACTCGAGAGGGAGGAAAGGAGGGAGGGA
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protein sequence of NO01G05520.3

>NO01G05520.3-protein ID=NO01G05520.3-protein|Name=NO01G05520.3|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MMRMRTNTPTSSSSSSPFLPSSISAFRPSSTRLAVTVEVVTDDDLSSSLR
RGRGREGRQAGGGEWRKVDDEVEVLFPEAFAQPKGIIHFVGGAVVGAFPR
AAYGPLLERLARQGYCIIATSLPFSLFDHAAGARLLAVAYARGENYVEGV
YGPRIRQQLPVFGLGHSLGAKMHVLLGSSPPSLPPSSSSSSPSPYRSKRR
ANVLVAFNNFSAQESVPLLDEMRNLGLSIGGMGLSSKLEDVSRLITSLSA
LDLSGASSPNSRRETNSGFDLASKGLNMAMSFLSSLPTDIPSDFTPSPDE
TWALLSSPPPSAPASSPFYSVPSNLVVSFDKDTIDQSPRLLSLLQQRGRE
GGRGEEGWRVSGWQERT*
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mRNA from alignment at chr1:1515253..1517537+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05520.3 ID=NO01G05520.3|Name=NO01G05520.3|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr1:1515253..1517537+ (Nannochloropsis oceanica)
TGCAAAAAATCCCCTTACACCCTCCACTCAATTCGTATTCCCACCTTATC
TCATTTTTACATTTTTTTCTCTTTTTATCGCCTCTTTCTTTCCAAAACCT
TCACCCGGCCAGCGGGCCGCGGTATTCCCCGACAGCGGTCCACAACCATG
ATGCGCATGCGCACCAATACCCCGACCTCCTCCTCCTCCTCCTCTCCTTT
CCTTCCTTCCTCCATCTCTGCCTTCCGTCCTTCCTCCACCCGCCTCGCCG
TCACGGTCGAAGTCGTCACAGACGACGATTTGTCCTCCTCCCTGCGTCGT
GGGAGGGGGAGGGAAGGAAGGCAGGCAGGAGGGGGGGAATGGAGAAAAGT
TGACGATGAGGTGGAAGTATTATTTCCTGAGGCCTTTGCTCAACCGAAGG
GCATCATTCACTTCGTGGGAGGGGCAGTGGTGGGCGCCTTTCCCCGAGCG
GCATATGGGCCCTTGTTGGAGCGGTTAGCGAGGCAGGTAGGGAAGGAGGC
GAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGGTAAGGATCGAGTGCACAG
GCTTATTCCTATTAATCATGCTTTGCTCTGGCTCGTATTTCTATGATGGA
GATGCCACGAATGAGGCTTGAGGCTCACCGTCCCCCCTCCCTCGCTCCCT
TCCTCCCTCCCTCCCTATTCCGATTAGGGGTACTGTATCATCGCCACATC
CCTCCCCTTCTCCCTCTTCGACCACGCGGCGGGCGCGCGTTTGCTGGCAG
TGGCCTACGCGCGAGGAGAGAATTATGTCGAGGGGGTGTACGGGCCTCGG
ATTCGGCAGCAGGTGAGGGAGGGAGAGAGGGAGGGAGGGAGGGATGTCGC
CTCAGATGCCAATCTTATGGAGCTGTTACGCTCCCTCCGCATTTGTCCCC
CCTCTCTTCACCTTTTCCTCTCTCCCTCATTCCCTCCCCCTCCTATTCCT
GCAGCTCCCCGTCTTCGGCCTCGGCCACTCCCTTGGCGCCAAAATGCACG
TCCTCCTCGGGTCCTCCCCTCCCTCCCTCCCTCCCTCCTCCTCCTCCTCC
TCCCCCTCCCCCTACCGCAGCAAGCGTCGGGCGAATGTGTTGGTGGCTTT
TAACAATTTTTCGGCTCAGGAATCAGTGCCCCTGCTGGACGAGATGAGGA
ACCTGGGTTTATCTATAGGGGGCATGGGCCTAAGCAGCAAGGTAGGGCGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAAATATGAAGT
AGGACCTAAAGGCAGGAATGAATTGTACCCCCCCCCCCCTTTTGGCTACT
CTGGCGCGTCCTCTTCCAACACACAGCCTTTTACCCTTCTGCTGATCCCG
CCCTCCCTCCCGCCCTCCCTTCCTCCCTCCCCCGGCCCCTCCCTTCCTTG
TAGCTGGAAGACGTTTCGCGCCTCATAACTTCCCTCTCCGCATTGGATCT
ATCCGGGGCCTCCTCGCCCAATTCGCGAAGAGAAACTAATAGCGGTTTCG
ACCTCGCATCGAAAGGTGAGAGAGAGTAGAGGGCGAGAGGGAGGGAGGGA
GGGAGGAAGAGAGGGAGGGAGGAAAGGAAATATCACCGTCATCTTGGGAT
TCAGCTGCTGTTTTTTTTAAACCACACACATGAATATACATAACTGACCT
CTGGGTTGAAAAAAAGGGAAGCTCCAGGCTAGCCAAATCACCTTTCATGT
CGTTGCTCAACCCCCCACCAACCCTCCCTCCCTCCTTTCCTCCCTCCCCC
CCACCCTCCCCCACCAGGCCTCAATATGGCTATGAGCTTCCTCTCCTCCC
TCCCAACCGATATCCCCTCCGACTTCACCCCCTCGCCCGACGAAACATGG
GCCCTCCTCTCCTCTCCCCCTCCCTCGGCCCCTGCCTCCTCCCCCTTCTA
CAGCGTGCCCTCCAACCTCGTCGTCTCCTTCGACAAGGACACAATCGATC
AGTCTCCCCGACTCCTCTCTCTCCTTCAGCAGCGAGGGAGGGAAGGAGGA
AGGGGGGAGGAAGGGTGGAGAGTGTCAGGCTGGCAGGAACGCACTTGACG
CCCAACACACCGCAGGGCGTGTTGGACGCCGAGGTTGAGGGCCGGGGGGA
GGGAGGGCAGGTGCAGGATGCCTACGGTAGAAAATGGGTGGAGGAAGGGG
GGGCGGGAGAAGCCGTAGAAGGAGCTGGAGGAGGAGAAGGAGCAATAGGA
GGAGCAGCGGCGCAGGCAGTGGCACGAACGGCGAAGCGGGAGTTGGATGC
GTAGGTCACTCGAGAGGGAGGAAAGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr1:1515253..1517537+

>NO01G05520.3 ID=NO01G05520.3|Name=NO01G05520.3|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr1:1515253..1517537+ (Nannochloropsis oceanica)
ATGATGCGCATGCGCACCAATACCCCGACCTCCTCCTCCTCCTCCTCTCC
TTTCCTTCCTTCCTCCATCTCTGCCTTCCGTCCTTCCTCCACCCGCCTCG
CCGTCACGGTCGAAGTCGTCACAGACGACGATTTGTCCTCCTCCCTGCGT
CGTGGGAGGGGGAGGGAAGGAAGGCAGGCAGGAGGGGGGGAATGGAGAAA
AGTTGACGATGAGGTGGAAGTATTATTTCCTGAGGCCTTTGCTCAACCGA
AGGGCATCATTCACTTCGTGGGAGGGGCAGTGGTGGGCGCCTTTCCCCGA
GCGGCATATGGGCCCTTGTTGGAGCGGTTAGCGAGGCAGGGGTACTGTAT
CATCGCCACATCCCTCCCCTTCTCCCTCTTCGACCACGCGGCGGGCGCGC
GTTTGCTGGCAGTGGCCTACGCGCGAGGAGAGAATTATGTCGAGGGGGTG
TACGGGCCTCGGATTCGGCAGCAGCTCCCCGTCTTCGGCCTCGGCCACTC
CCTTGGCGCCAAAATGCACGTCCTCCTCGGGTCCTCCCCTCCCTCCCTCC
CTCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTACCGCAGCAAGCGTCGG
GCGAATGTGTTGGTGGCTTTTAACAATTTTTCGGCTCAGGAATCAGTGCC
CCTGCTGGACGAGATGAGGAACCTGGGTTTATCTATAGGGGGCATGGGCC
TAAGCAGCAAGCTGGAAGACGTTTCGCGCCTCATAACTTCCCTCTCCGCA
TTGGATCTATCCGGGGCCTCCTCGCCCAATTCGCGAAGAGAAACTAATAG
CGGTTTCGACCTCGCATCGAAAGGCCTCAATATGGCTATGAGCTTCCTCT
CCTCCCTCCCAACCGATATCCCCTCCGACTTCACCCCCTCGCCCGACGAA
ACATGGGCCCTCCTCTCCTCTCCCCCTCCCTCGGCCCCTGCCTCCTCCCC
CTTCTACAGCGTGCCCTCCAACCTCGTCGTCTCCTTCGACAAGGACACAA
TCGATCAGTCTCCCCGACTCCTCTCTCTCCTTCAGCAGCGAGGGAGGGAA
GGAGGAAGGGGGGAGGAAGGGTGGAGAGTGTCAGGCTGGCAGGAACGCAC
TTGA
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Synonyms
Publications