NO01G05280.1, NO01G05280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05280.1
Unique NameNO01G05280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2343
Alignment locationchr1:1408445..1411768 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1408445..1411768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G05280.1 vs.
Match: EWM22755.1 (poly -binding protein 4 isoform c [Nannochloropsis gaditana])

HSP 1 Score: 150.2 bits (378), Expect = 1.600e-32
Identity = 149/481 (30.98%), Postives = 228/481 (47.40%), Query Frame = 0 
Query:    2 ETAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSS------QPNDSLS-HYEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRRGEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQKAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASRVRKSSPSGEDGIIAAS------SHEKFELSP-PGIKMVIDSSKAGLLLGKGGVIISKIRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALSASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQATFSDDHQYQLAAAPYFSVANHLLCYPSSEHMNMTTLSQSMSHLCMTDDGPY---ILSPYATVPLLPNNHPSPQVYYLAQTLAPSNFQIHQQQKTVQKKQQEQQLHPKHQQEDSKAEVQNIQASIPGTEEQ 466
            +  P   Q  + H  H TQ+   +++  QD  DC S +LS        P +S S H   +  +  C           +AP+++      +RLL+P +R+G+ IGR+G  IR +   TGA +++       RD A+R++VV GS  +VCWAVDLLAQK GLF GYSNI    K   + K +  TP   +         +  P     +   SP+ E+ I  A+        +  ++ P PGI++++ SS AG LLG+ G  IS IRS+S AR++LL++  SA EG I  ER+L+I+G PDYCRRAH L++ AL+ +    +     QQG          P  I Q  S +  T            PY   ++        +H  MT  ++ M +        +   + SPYA  P     H +  + Y  Q      F +  Q++ +  +QQ  Q +  +   ++      + ASIP TEE+
Sbjct:   14 DNPPACLQSQKGHARHFTQDICMVED-FQDGQDCRSVNLSDALVDDDSPKESYSTHAPSKKPVDDC-------HQIRRAPYKVTPGVICSRLLIPQSRVGLAIGRKGGRIREMSATTGARINVCIQNGIGRDEAYRLIVVTGSITAVCWAVDLLAQKTGLFNGYSNILSRPKEILNHK-MGRTPVMDA--------NSLIPEGKDGIGNPSPAEENIIDGATELKNNGDRKSDQIVPLPGIRLLVHSSMAGALLGRAGSTISFIRSQSNARIVLLNEEESAMEGGIVGERVLLIVGIPDYCRRAHLLVLGALNDTNFLAK--ARAQQG---------LPGSIQQDYSKADTTL-----------PYLRRSSKQPKNQMKDH-EMTMCNRGMVNFASPVPLSFNMGVQSPYAFSPA----HMNAMMSYQQQA-----FSMQLQEQHMLFQQQMWQYYQINPFSNNFENANMVHASIPLTEER 445
The following BLAST results are available for this feature:
BLAST of NO01G05280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22755.11.600e-3230.98poly -binding protein 4 isoform c [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05280NO01G05280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05280.1NO01G05280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05280.1.cds1NO01G05280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds2NO01G05280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds3NO01G05280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds4NO01G05280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds5NO01G05280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds6NO01G05280.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds7NO01G05280.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05280.1.cds8NO01G05280.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05280.1 ID=NO01G05280.1|Name=NO01G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=2343bp
CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGACACAGAAGACACTGGTTCTGCACCTAGAAAGGATCGGCTG
GCTTAAAAACGCCTTGATTGTGATGCCACAAAATTATATTGCTGTTAAAT
GAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTTAGTACTAGGTTTTTC
AAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGGAGACTGCACCGCAAA
ATCAGCAACGAGACCGAAAGCATATCCATCATGTCACCCAAGAATTCTCC
AGCATCGATGAAGGCTGCCAAGATGACCACGATTGTGACTCGTCCGACTT
ATCATCGCAACCCAACGACTCTTTGTCCCACTACGAGGGTGAGCCCAGCT
TGTCAACTTGCTCTTTGCGTCCTGGTCTGTACCAGCACACTGGGCAAGCG
CCTCATCAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAG
CACCCGAATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTA
TTTGCGATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAAC
AAGCGCGATTCCGCGCATCGCATGGTTGTTGTCATGGGCTCCGCAATGTC
CGTCTGCTGGGCTGTGGACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAG
GCTATAGCAACATCCACCCCCACCATAAAAGTCGAAAGCACTTAAAAACG
CTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGTATTGACTTAAA
AGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAAATCCAGCCCTT
CGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGAAGTTTGAGCTA
TCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAGGCGGGCTTGCT
ATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCCAAAG
CACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGCTATT
GCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGCCGACG
TGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGACGCCTG
AGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATCATCCG
CAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCTACCTT
CAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTCTGTGG
CCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGACCACT
CTGAGTCAATCCATGTCACACCTTTGTATGACCGACGACGGCCCCTACAT
TTTGTCTCCCTATGCCACCGTACCTCTCCTCCCCAACAACCATCCATCAC
CGCAAGTGTATTACCTGGCTCAAACTTTGGCGCCTTCCAATTTCCAGATC
CATCAGCAACAGAAGACGGTACAAAAGAAGCAACAGGAGCAACAGCTTCA
CCCGAAACATCAGCAGGAAGACTCGAAGGCTGAGGTGCAGAATATCCAGG
CATCGATACCAGGCACCGAGGAGCAGAAGGTGTAGGACTTCGGACGGCAT
GTCATCATATATATCCAACTCTGTAACATATGACGCGCAAAACCACTGCT
CACAGGACTGTGAAAGTACATTCTCTCTGTTCTCATCCTCCTCGAAAGTA
ACATTTTCCAATCAGAGCAATGTGTCACCCCGGTCTATATCCGAGGACTT
AATAGCTAATGATAGTAAATTCAAAAGTTCACGAAGAATTTCTGAGAATG
GGAATCATCTGAGCATTCAAAGGAATAAAAAGAGGCCAATGGCAACAGAT
CAAATGACCGCACATCTAAGCTTCTCTTGGGTGCGCATGAGAGAAAAAGG
AAGAGATAGATATTTCAAAACTTAAGAGCCATCATATTCGGGC
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protein sequence of NO01G05280.1

>NO01G05280.1-protein ID=NO01G05280.1-protein|Name=NO01G05280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
METAPQNQQRDRKHIHHVTQEFSSIDEGCQDDHDCDSSDLSSQPNDSLSH
YEGEPSLSTCSLRPGLYQHTGQAPHQLPLVDTYARLLLPSTRMGIIIGRR
GEAIRSICDITGAHVSIASLEHNKRDSAHRMVVVMGSAMSVCWAVDLLAQ
KAGLFEGYSNIHPHHKSRKHLKTLVSTPTSSSVPTRIDLKEATSPTSASR
VRKSSPSGEDGIIAASSHEKFELSPPGIKMVIDSSKAGLLLGKGGVIISK
IRSKSKARVLLLDQSLSAKEGAIANERILIIIGKPDYCRRAHQLIIAALS
ASPLTPEDVLHHQQGGSKSWNHPQEPQFIHQQPSASQATFSDDHQYQLAA
APYFSVANHLLCYPSSEHMNMTTLSQSMSHLCMTDDGPYILSPYATVPLL
PNNHPSPQVYYLAQTLAPSNFQIHQQQKTVQKKQQEQQLHPKHQQEDSKA
EVQNIQASIPGTEEQKV*
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mRNA from alignment at chr1:1408445..1411768-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05280.1 ID=NO01G05280.1|Name=NO01G05280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3324bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica)
CCACAACTAACTGCCAGAGCCGTTAATGGGAGAGAACTCTGACCCCGAGT
GGGATGCACGCACAGGGGTGTTAGATAGATACGATCTCCTCGACGTACAT
GATCTCAAGGTCTAGCCCATTCCTGTCACCTTGCCTCGCAAGACAAGATC
TTGGTCTTCTTGTCGAGCCTTGTGCCGGTGTGTGAATTCATCACGTCTAC
TACCCCCTCCAAGTCACAGCCCTCTGGTCACTAACAGCATTCCGTTTCCA
AATACTGCCCTGTCTCGATTACCAAAGCGCCGCTCCTCTTGCATCTTCAT
GTCTACTAGCACGCTGGTCGGCTCACAGCCCTGCCTCGCGTAAGCCTGAA
GCGGCCATACAGAGACACCCACTAAGCCTAGGTGGCATTCGAGCCCAGAG
GTGCTCGAGGTATACAAAGCGAAATATATTGAGCCTTGATGCAGAGAATA
TCACAGCACAGCCAAACCTATCCCCTGCTGACAACACAGATGTATACGTC
TGGACGAGAATCCCCAGTGACTATAGCACAAACGACTCACCTCTCTTTCT
ACCAACATATTGCCTCCTGCATAGACACAGAAGACACTGGTTCTGCACCT
AGAAAGGATCGGCTGGCTTAAAAACGCCTTGATTGTGATGCCACAAAATT
ATATTGCTGTTAAATGAGAGCTTATATCCCTCCCCCGTAGAAGTAGCCTT
AGTACTAGGTTTTTCAAATCGAAAAAAGCAGCCGTTTCCTGATAAGATGG
AGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCATGTC
ACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACGATTG
TGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCACTACG
AGGGGTAAGTGAAGCAACCCAAATTTTTGAAGGCATGGTCAAACGACCCT
GCATCTTGGCCTTGGAGCAAAAATCAGCTTGTCCTCACCGATCTTGTACT
CTCACACACTCACACACTACAGTGAGCCCAGCTTGTCAACTTGCTCTTTG
CGTCCTGGTCTGTACCAGCACACTGGGCAAGGTACGTTTTGCATAAGTGC
TTTCCAAAGGCTATCCTTGCAACGTGCACCCAACTCTCTGCATCAACATC
TCATCATTGTTCCCTTGTGATAATCCCACAATGCCTGTGTAGCGCCTCAT
CAACTCCCACTCGTGGACACTTACGCCCGTTTACTGCTGCCCAGCACCCG
AATGGGTATAATAATTGGTCGTAGGGGGGAAGCGATTCGCAGTATTTGCG
ATATTACAGGGGCACACGTGAGCATTGCTTCCCTCGAGCATAACAAGCGC
GATTCCGCGCATCGCATGGTACGTCCTACTCTTCGGTCCTTTGTCCATGC
AGCATCGACAGTCGATTGAAACTCATCATGCATATTTCTCCTTTTCATTT
ACGCACAGGTTGTTGTCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTG
GACTTGCTTGCCCAAAAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCA
CCCCCACCATAAAAGGTGAGATGAGCACTCAAAGATTAGGAATGAGGCAA
TTTTGGCCCAAGCTATATCCCATCTCATTCCTTACCGCACAGTCGAAAGC
ACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTCCCACCCGT
ATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGAGTACGTAA
ATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTCGCACGAGA
AGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACTCCTCCAAG
GTATTTCTCACAAAATCATTTCTCAAAAACATGTCCTGGCATTCGTCTCT
TTTCACGTACTATATAACGTCTAACTTTATCAAGTGCCCTTGTGCAACGC
GATTTTCCAAGCTCACTCATTCATATTTTCCCTTCCGCTTATACCTTCTC
TCCCGCCCCGTCCCCCTTCTTTCTGTTTATGACTTCAATGCAGGCGGGCT
TGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAAATTCGCTCAAAATCC
AAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAGCGCCAAGGAAGGAGC
TGTAAGTCACGAGGGACATAAAATCACAAAGCACAAGCATAAAATATTCG
ATCAATACCATCTTTCAATCTGACATTCAACCGCCTATTCTCGTATTTAC
AGATTGCGAACGAGCGTATACTTATTATAATTGGCAAGCCTGATTATTGC
CGACGTGCCCATCAGCTCATTATCGCTGCTTTGAGTGCCAGTCCTCTGAC
GCCTGAGGATGTACTACATCATCAACAAGGGGGATCTAAATCTTGGAATC
ATCCGCAAGAGCCACAATTTATCCATCAACAACCATCCGCCTCCCAGGCT
ACCTTCAGTGACGATCATCAGTATCAACTAGCGGCGGCTCCGTACTTTTC
TGTGGCCAACCATTTATTGTGCTACCCCTCAAGCGAGCACATGAATATGG
TACGTATGATTTTGGGGCGGATCCATCCACACACGCTTATAACCAGCAAG
GAGATGGACTCAATCTTTATAAATTTACGATCAGTGATGCACTCACACAA
CAACTTCACCTGACCAAATAAACAGACCACTCTGAGTCAATCCATGTCAC
ACCTTTGTATGACCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACC
GTACCTCTCCTCCCCAACAACCATCCATCACCGCAAGTGTATTACCTGGC
TCAAACTTTGGCGCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGG
TACAAAAGAAGCAACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAA
GACTCGAAGGCTGAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGA
GGAGCAGAAGGTGTAGGACTTCGGACGGCATGTCATCATATATATCCAAC
TCTGTAACATATGACGCGCAAAACCACTGCTCACAGGACTGTGAAAGTAC
ATTCTCTCTGTTCTCATCCTCCTCGAAAGTAACATTTTCCAATCAGAGCA
ATGTGTCACCCCGGTCTATATCCGAGGACTTAATAGCTAATGATAGTAAA
TTCAAAAGTTCACGAAGAATTTCTGAGAATGGGAATCATCTGAGCATTCA
AAGGAATAAAAAGAGGCCAATGGCAACAGATCAAATGACCGCACATCTAA
GCTTCTCTTGGGTGCGCATGAGAGAAAAAGGAAGAGATAGATATTTCAAA
ACTTAAGAGCCATCATATTCGGGC
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Coding sequence (CDS) from alignment at chr1:1408445..1411768-

>NO01G05280.1 ID=NO01G05280.1|Name=NO01G05280.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr1:1408445..1411768- (Nannochloropsis oceanica)
ATGGAGACTGCACCGCAAAATCAGCAACGAGACCGAAAGCATATCCATCA
TGTCACCCAAGAATTCTCCAGCATCGATGAAGGCTGCCAAGATGACCACG
ATTGTGACTCGTCCGACTTATCATCGCAACCCAACGACTCTTTGTCCCAC
TACGAGGGTGAGCCCAGCTTGTCAACTTGCTCTTTGCGTCCTGGTCTGTA
CCAGCACACTGGGCAAGCGCCTCATCAACTCCCACTCGTGGACACTTACG
CCCGTTTACTGCTGCCCAGCACCCGAATGGGTATAATAATTGGTCGTAGG
GGGGAAGCGATTCGCAGTATTTGCGATATTACAGGGGCACACGTGAGCAT
TGCTTCCCTCGAGCATAACAAGCGCGATTCCGCGCATCGCATGGTTGTTG
TCATGGGCTCCGCAATGTCCGTCTGCTGGGCTGTGGACTTGCTTGCCCAA
AAAGCAGGCCTTTTTGAAGGCTATAGCAACATCCACCCCCACCATAAAAG
TCGAAAGCACTTAAAAACGCTCGTTAGTACTCCTACGTCCTCCTCAGTTC
CCACCCGTATTGACTTAAAAGAAGCAACTAGCCCCACTAGCGCCTCCAGA
GTACGTAAATCCAGCCCTTCGGGTGAGGATGGAATCATCGCTGCCTCCTC
GCACGAGAAGTTTGAGCTATCCCCTCCGGGTATCAAGATGGTGATCGACT
CCTCCAAGGCGGGCTTGCTATTAGGGAAAGGAGGCGTTATTATAAGTAAA
ATTCGCTCAAAATCCAAAGCACGGGTCTTGCTTCTGGATCAGAGCTTAAG
CGCCAAGGAAGGAGCTATTGCGAACGAGCGTATACTTATTATAATTGGCA
AGCCTGATTATTGCCGACGTGCCCATCAGCTCATTATCGCTGCTTTGAGT
GCCAGTCCTCTGACGCCTGAGGATGTACTACATCATCAACAAGGGGGATC
TAAATCTTGGAATCATCCGCAAGAGCCACAATTTATCCATCAACAACCAT
CCGCCTCCCAGGCTACCTTCAGTGACGATCATCAGTATCAACTAGCGGCG
GCTCCGTACTTTTCTGTGGCCAACCATTTATTGTGCTACCCCTCAAGCGA
GCACATGAATATGACCACTCTGAGTCAATCCATGTCACACCTTTGTATGA
CCGACGACGGCCCCTACATTTTGTCTCCCTATGCCACCGTACCTCTCCTC
CCCAACAACCATCCATCACCGCAAGTGTATTACCTGGCTCAAACTTTGGC
GCCTTCCAATTTCCAGATCCATCAGCAACAGAAGACGGTACAAAAGAAGC
AACAGGAGCAACAGCTTCACCCGAAACATCAGCAGGAAGACTCGAAGGCT
GAGGTGCAGAATATCCAGGCATCGATACCAGGCACCGAGGAGCAGAAGGT
GTAG
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Synonyms
Publications