NO01G05090.1, NO01G05090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05090.1
Unique NameNO01G05090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1011
Alignment locationchr1:1357327..1358337 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1357327..1358337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05090.1 vs.
Match: EWM29447.1 (carboxyvinyl-carboxyphosphonate phosphorylmutase [Nannochloropsis gaditana])

HSP 1 Score: 555.8 bits (1431), Expect = 9.000e-155
Identity = 283/327 (86.54%), Postives = 296/327 (90.52%), Query Frame = 0 
Query:   12 LIFPLLVSSFV----LPTTIQPSHARRRGALTCMAASPSPASKLRTLLTQKDILVMPCCYDGLTARLVEMHGFPITFMTGFGVSAARGHPDTQLLSYGEMVDNARQISEALQTIPCIGDGDTGYGNAVNVKRTVKGYAQAGLAGIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMARTDARAGLGMDEAIYRCQKFREIGADITFLEAPHTEEEMRRYCQEVEGPKLANMLQNGKTPSFPPAKLQEIGYTIVAYPLALLSAGIKAMNEVLVLAKDGKEFEHLLATFEETKDVVGFPAYYVAEDKAAGDIEAF 335
            L+ P LVS+F     LP +   SH+RR   ++CMAAS SPA+KLR LL Q DIL+MPCCYDGLTARLVE HGFP+TFMTGFGVSAARGHPDTQLLSY EMVDNARQISEAL TIPCIGDGDTGYGNAVNVKRTV GYAQAGLAGIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMARTDARAGLGMDEAIYRCQKFREIGADITFLEAPH+EEEMRRYCQEVEGPKLANMLQNG+TP  PPAKLQE+GYTIVAYPLALLSAGIKAM  VL LAKDGKEFEHLLA FEETK VVGFPAYY AE+KAA DIEAF
Sbjct:   18 LLLPSLVSAFFVRTPLPMSTVLSHSRR--TVSCMAASTSPATKLRNLLQQNDILIMPCCYDGLTARLVEQHGFPLTFMTGFGVSAARGHPDTQLLSYAEMVDNARQISEALHTIPCIGDGDTGYGNAVNVKRTVGGYAQAGLAGIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMARTDARAGLGMDEAIYRCQKFREIGADITFLEAPHSEEEMRRYCQEVEGPKLANMLQNGRTPVLPPAKLQEMGYTIVAYPLALLSAGIKAMRTVLTLAKDGKEFEHLLADFEETKAVVGFPAYYAAEEKAAADIEAF 342
The following BLAST results are available for this feature:
BLAST of NO01G05090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29447.19.000e-15586.54carboxyvinyl-carboxyphosphonate phosphorylmutase [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05090NO01G05090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05090.1NO01G05090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05090.1.cds1NO01G05090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05090.1 ID=NO01G05090.1|Name=NO01G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
ATGCCTACCATCGCGATGCACATCCACTCATTTCTCATCTTTCCCCTCTT
GGTCTCTTCCTTCGTCCTTCCGACTACGATCCAACCCTCCCATGCCCGAC
GCCGCGGCGCCCTGACCTGCATGGCTGCCTCGCCCTCCCCCGCCTCCAAG
CTCCGCACCCTCCTCACGCAAAAGGACATTCTAGTCATGCCCTGCTGCTA
TGACGGGCTGACGGCCCGCCTGGTCGAAATGCATGGCTTTCCTATCACGT
TCATGACGGGTTTTGGCGTCTCTGCTGCGCGAGGACACCCTGACACCCAG
CTACTCAGCTACGGAGAAATGGTGGACAACGCCCGTCAAATTTCCGAGGC
TCTGCAAACGATTCCTTGCATCGGTGACGGCGACACTGGGTACGGAAATG
CCGTCAATGTAAAGCGCACTGTGAAGGGGTACGCTCAAGCTGGACTGGCG
GGAATTATGATTGAAGATCAAGTGGCACCTAAGAAGTGTGGGCACACCAA
GGGAAAGAGCTGTGTGTCGCGGGAAGAGGCTTTTGCCCGGGTGCAAGCAG
CGGTGGACGCACGGAACGAGGGGGCGGATATTTTGATCATGGCAAGGACC
GACGCCAGGGCCGGGTTGGGGATGGACGAAGCGATTTATCGTTGTCAGAA
ATTTCGTGAGATCGGTGCGGATATCACCTTCTTGGAGGCGCCGCATACGG
AGGAGGAAATGCGACGATACTGCCAAGAGGTGGAGGGACCAAAGCTGGCG
AACATGCTTCAGAATGGTAAGACGCCGTCGTTCCCCCCGGCGAAGTTGCA
GGAGATCGGGTATACAATCGTGGCGTACCCGTTGGCGTTGTTGAGTGCTG
GAATCAAGGCGATGAATGAGGTGTTGGTGCTTGCGAAGGATGGGAAGGAA
TTTGAGCATCTCTTGGCGACGTTTGAGGAGACGAAGGACGTGGTGGGCTT
TCCGGCTTATTATGTGGCGGAGGACAAGGCGGCAGGCGACATTGAGGCGT
TTCGGGAGTAA
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protein sequence of NO01G05090.1

>NO01G05090.1-protein ID=NO01G05090.1-protein|Name=NO01G05090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MPTIAMHIHSFLIFPLLVSSFVLPTTIQPSHARRRGALTCMAASPSPASK
LRTLLTQKDILVMPCCYDGLTARLVEMHGFPITFMTGFGVSAARGHPDTQ
LLSYGEMVDNARQISEALQTIPCIGDGDTGYGNAVNVKRTVKGYAQAGLA
GIMIEDQVAPKKCGHTKGKSCVSREEAFARVQAAVDARNEGADILIMART
DARAGLGMDEAIYRCQKFREIGADITFLEAPHTEEEMRRYCQEVEGPKLA
NMLQNGKTPSFPPAKLQEIGYTIVAYPLALLSAGIKAMNEVLVLAKDGKE
FEHLLATFEETKDVVGFPAYYVAEDKAAGDIEAFRE*
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mRNA from alignment at chr1:1357327..1358337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05090.1 ID=NO01G05090.1|Name=NO01G05090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at chr1:1357327..1358337- (Nannochloropsis oceanica)
ATGCCTACCATCGCGATGCACATCCACTCATTTCTCATCTTTCCCCTCTT
GGTCTCTTCCTTCGTCCTTCCGACTACGATCCAACCCTCCCATGCCCGAC
GCCGCGGCGCCCTGACCTGCATGGCTGCCTCGCCCTCCCCCGCCTCCAAG
CTCCGCACCCTCCTCACGCAAAAGGACATTCTAGTCATGCCCTGCTGCTA
TGACGGGCTGACGGCCCGCCTGGTCGAAATGCATGGCTTTCCTATCACGT
TCATGACGGGTTTTGGCGTCTCTGCTGCGCGAGGACACCCTGACACCCAG
CTACTCAGCTACGGAGAAATGGTGGACAACGCCCGTCAAATTTCCGAGGC
TCTGCAAACGATTCCTTGCATCGGTGACGGCGACACTGGGTACGGAAATG
CCGTCAATGTAAAGCGCACTGTGAAGGGGTACGCTCAAGCTGGACTGGCG
GGAATTATGATTGAAGATCAAGTGGCACCTAAGAAGTGTGGGCACACCAA
GGGAAAGAGCTGTGTGTCGCGGGAAGAGGCTTTTGCCCGGGTGCAAGCAG
CGGTGGACGCACGGAACGAGGGGGCGGATATTTTGATCATGGCAAGGACC
GACGCCAGGGCCGGGTTGGGGATGGACGAAGCGATTTATCGTTGTCAGAA
ATTTCGTGAGATCGGTGCGGATATCACCTTCTTGGAGGCGCCGCATACGG
AGGAGGAAATGCGACGATACTGCCAAGAGGTGGAGGGACCAAAGCTGGCG
AACATGCTTCAGAATGGTAAGACGCCGTCGTTCCCCCCGGCGAAGTTGCA
GGAGATCGGGTATACAATCGTGGCGTACCCGTTGGCGTTGTTGAGTGCTG
GAATCAAGGCGATGAATGAGGTGTTGGTGCTTGCGAAGGATGGGAAGGAA
TTTGAGCATCTCTTGGCGACGTTTGAGGAGACGAAGGACGTGGTGGGCTT
TCCGGCTTATTATGTGGCGGAGGACAAGGCGGCAGGCGACATTGAGGCGT
TTCGGGAGTAA
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Coding sequence (CDS) from alignment at chr1:1357327..1358337-

>NO01G05090.1 ID=NO01G05090.1|Name=NO01G05090.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr1:1357327..1358337- (Nannochloropsis oceanica)
ATGCCTACCATCGCGATGCACATCCACTCATTTCTCATCTTTCCCCTCTT
GGTCTCTTCCTTCGTCCTTCCGACTACGATCCAACCCTCCCATGCCCGAC
GCCGCGGCGCCCTGACCTGCATGGCTGCCTCGCCCTCCCCCGCCTCCAAG
CTCCGCACCCTCCTCACGCAAAAGGACATTCTAGTCATGCCCTGCTGCTA
TGACGGGCTGACGGCCCGCCTGGTCGAAATGCATGGCTTTCCTATCACGT
TCATGACGGGTTTTGGCGTCTCTGCTGCGCGAGGACACCCTGACACCCAG
CTACTCAGCTACGGAGAAATGGTGGACAACGCCCGTCAAATTTCCGAGGC
TCTGCAAACGATTCCTTGCATCGGTGACGGCGACACTGGGTACGGAAATG
CCGTCAATGTAAAGCGCACTGTGAAGGGGTACGCTCAAGCTGGACTGGCG
GGAATTATGATTGAAGATCAAGTGGCACCTAAGAAGTGTGGGCACACCAA
GGGAAAGAGCTGTGTGTCGCGGGAAGAGGCTTTTGCCCGGGTGCAAGCAG
CGGTGGACGCACGGAACGAGGGGGCGGATATTTTGATCATGGCAAGGACC
GACGCCAGGGCCGGGTTGGGGATGGACGAAGCGATTTATCGTTGTCAGAA
ATTTCGTGAGATCGGTGCGGATATCACCTTCTTGGAGGCGCCGCATACGG
AGGAGGAAATGCGACGATACTGCCAAGAGGTGGAGGGACCAAAGCTGGCG
AACATGCTTCAGAATGGTAAGACGCCGTCGTTCCCCCCGGCGAAGTTGCA
GGAGATCGGGTATACAATCGTGGCGTACCCGTTGGCGTTGTTGAGTGCTG
GAATCAAGGCGATGAATGAGGTGTTGGTGCTTGCGAAGGATGGGAAGGAA
TTTGAGCATCTCTTGGCGACGTTTGAGGAGACGAAGGACGTGGTGGGCTT
TCCGGCTTATTATGTGGCGGAGGACAAGGCGGCAGGCGACATTGAGGCGT
TTCGGGAGTAA
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Synonyms
Publications