NO01G04960.1, NO01G04960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04960.1
Unique NameNO01G04960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length793
Alignment locationchr1:1316069..1317509 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1316069..1317509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G04960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04960NO01G04960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04960.1NO01G04960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04960.1.cds1NO01G04960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04960.1.cds2NO01G04960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04960.1.cds3NO01G04960.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04960.1.cds4NO01G04960.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04960.1.cds5NO01G04960.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04960.1 ID=NO01G04960.1|Name=NO01G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=793bp
CCACAGCACCATCACGAAAAGAAGAGCTAGCAAAATCCAGCACCGTCAGC
AAGGATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGC
AACAAGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTC
GACGCCGTCCACAGCATTCTCATCACCCCACCGCAAAAACTCAACTTGGC
GCTGGTGGCTCTTTTTATGCCGTCCTTGCCTGTCGTCACTTTTTACAGCA
GTATCATGTTTGAATTGTCCTTAGGGCAGTACGCTCCTCAATTCGTCGGC
GTCTCCGTGATTGCCGGCCTGCTCTTATACTACACATACGTACAAGTGGC
CAATCTAAAGGAGGAAAAGCTTATCAAGCAACGAGATTTGATGCCCAGTG
GAAACCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGACGCTGTACTCT
TCCACCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCTGCAATGCTCT
CTACCTCGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACG
GCATCGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTT
CTTCTCGCTGCCCGACCAAGCTTTTTTGTGTGGTGATCTAGGGGACAGGG
ATGGATGGAAGAAGTGACCGAGGGGGTGAGAGGCAATGTAGTATAAATTA
GATCAAGACTAAGATGTGGCTCGGTTCTGTAAGAGGCGGCATAAGAAGGG
AGGGGAAAAGGAAAGCAGATAAGACAAACTGTTACTACCAATG
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protein sequence of NO01G04960.1

>NO01G04960.1-protein ID=NO01G04960.1-protein|Name=NO01G04960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MGKHGSKHQQQPKKRQQVDNQEWEAVLKEAKVDAVHSILITPPQKLNLAL
VALFMPSLPVVTFYSSIMFELSLGQYAPQFVGVSVIAGLLLYYTYVQVAN
LKEEKLIKQRDLMPSGNLSKKDKEAWQATLYSSTTMESLSYALFVCNALY
LAAFLYLAFSASPKYGIVAGTNHLLSTLLPAVLLAARPSFFVW*
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mRNA from alignment at chr1:1316069..1317509+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04960.1 ID=NO01G04960.1|Name=NO01G04960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1441bp|location=Sequence derived from alignment at chr1:1316069..1317509+ (Nannochloropsis oceanica)
CCACAGCACCATCACGAAAAGAAGAGCTAGCAAAATCCAGCACCGTCAGC
AAGGATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGC
AACAAGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTC
GACGCCGTCCACAGCATTCTCATCACCCCACCGCAAAGTTAGTTCTTGAT
ATGTGTACATGTGGGTCTAGAGATGGCCAAATGGGCTTGTTTGTCTGTAG
ACACGACGGACGCTGTTGGATCCTGCGATACCATCTCGCTACCCAACACG
ATAATTTTGTATTAACAACAACTATACACGCACATACGCACATAAATACG
CACAGAACTCAACTTGGCGCTGGTGGCTCTTTTTATGCCGTCCTTGCCTG
TCGTCACTTTTTACAGCAGTATCATGTTTGAATTGTCCTTAGGGCAGGTG
AGAGGTGAAGGATGCGAAATTGAGTGAGGGCATAGATGGTTTCGTTTTGT
GTGGGTGCTTGGACGCTTGGACGCTTGGACGCAAATAATTGCCAAAGTGG
TCATTTAAAGCATTCTGGCATGTAGTTACGCATATTCTTACATGTGGCTT
TGCTTATCTCTTCCCTCTGAACCCCGATCCTCCCTCTTTCAGTACGCTCC
TCAATTCGTCGGCGTCTCCGTGATTGCCGGCCTGCTCTTATACTACACAT
ACGTACAAGTGGCCAATCTAAAGGAGGAAAAGCTTATCAAGCAACGGTGC
GTACACTAAAGAAAAGTACATTGAAGGGGGGGGATGAGCACGGGATTGTT
TTCACAGCCTGCAGGATAAATTAGGATTGTTCCATGCGATGGGTAGTTGA
TCTTAACTCTGTCTACATCTCCCTCTTTTCCCCGCATGAATATAGAGATT
TGATGCCCAGTGGAAACCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCG
ACGCTGTACTCTTCCACCACGATGGAGTCCCTATCCTACGCTCTCTTTGT
CTGCAATGCTCTCTACCTCGTACGTACATCAATGTTTGCCCTATTTGCCG
CCAGTATCTCGTTCTTATAGCCAGAAAGACTGAGAAAGGCTGTCATCATC
GTCCAATTATGCTCACAAAACGCCCCCTCTTTCTCTCAATTTCTCCTTTG
CGCAGGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGC
ATCGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCT
TCTCGCTGCCCGACCAAGCTTTTTTGTGTGGTGATCTAGGGGACAGGGAT
GGATGGAAGAAGTGACCGAGGGGGTGAGAGGCAATGTAGTATAAATTAGA
TCAAGACTAAGATGTGGCTCGGTTCTGTAAGAGGCGGCATAAGAAGGGAG
GGGAAAAGGAAAGCAGATAAGACAAACTGTTACTACCAATG
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Coding sequence (CDS) from alignment at chr1:1316069..1317509+

>NO01G04960.1 ID=NO01G04960.1|Name=NO01G04960.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr1:1316069..1317509+ (Nannochloropsis oceanica)
ATGGGAAAGCATGGCAGCAAGCACCAGCAGCAGCCCAAGAAGCGGCAACA
AGTGGACAACCAGGAATGGGAAGCTGTCCTGAAGGAGGCTAAAGTCGACG
CCGTCCACAGCATTCTCATCACCCCACCGCAAAAACTCAACTTGGCGCTG
GTGGCTCTTTTTATGCCGTCCTTGCCTGTCGTCACTTTTTACAGCAGTAT
CATGTTTGAATTGTCCTTAGGGCAGTACGCTCCTCAATTCGTCGGCGTCT
CCGTGATTGCCGGCCTGCTCTTATACTACACATACGTACAAGTGGCCAAT
CTAAAGGAGGAAAAGCTTATCAAGCAACGAGATTTGATGCCCAGTGGAAA
CCTGAGCAAAAAGGATAAAGAGGCTTGGCAAGCGACGCTGTACTCTTCCA
CCACGATGGAGTCCCTATCCTACGCTCTCTTTGTCTGCAATGCTCTCTAC
CTCGCCGCATTCCTCTACCTGGCTTTTTCCGCGTCGCCTAAATACGGCAT
CGTCGCCGGTACAAACCACCTATTGAGCACCCTCCTCCCCGCAGTTCTTC
TCGCTGCCCGACCAAGCTTTTTTGTGTGGTGA
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Synonyms
Publications