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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1282839..1285007 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G04850.1 vs.
Match: EWM29418.1 (hypothetical protein Naga_100042g35 [Nannochloropsis gaditana]) HSP 1 Score: 863.6 bits (2230), Expect = 3.800e-247 Identity = 453/631 (71.79%), Postives = 510/631 (80.82%), Query Frame = 0
Query: 11 RGATPRSMRLLVSLCRLVLLVVSAEAFRGLIRPSPSSSSSS----APRVLATA-TAAPSSSFSPRLLAEHLSWPPASRNSRTRMPSMVMPSVAKVLTAVPRFLGRKLMDGGDAIYLKKCLFLPPGSSNVAAAITSSTSAIGGTSTRDDSKENASQGQTSPFPPPP-NTDMVLIFYPGIGLGPSSYRDTALAIQDALASNYDIQAYVVIAKFMNNLGYLPQEPQRRLASILAELGERGISPRAPVAVVGHSAGAFLAYDAALTRAQAFVHLGSTLNSRGVLPWTPRSVVEYPKPILQLLGEMDGYIRFTGGALEYAEVEGLMAKKGFEDVLLEKPVVVLPGVSHEQFGDGQQSKMARMSGRRDLPPYVSLQEAHRMTGKIVGAFLALHLFPENGQARVGGANTVRSAFEATGRMVRPYLNEMTEQAEDDFIRWAQAEVASVEGVGRNSVRACVFHTEQEFVYSKPTLDGESEYLQVCVRKQQQTNTIKIGFTKQISPAFGLKMKRQEAVVQVLRRYPSKKAPTAAELNRRTFQKALERVSEEARRRYDRYGRKLEFMADDEITAERGGGPAWVAAPLEVKPRVEDPMRVTVRAPVLYTPIDTLPRFAGMCYMKLLTPAQAIEWICHDAFIPW 636
RG ++ L+ L SA A I+P+ SS SS AP +++A P+SS LA L P + RTR +M +PS+ ++LTAVPRF+GRK+MDGGDAIY+KK LFLPPGS + GTS + Q TS PP DMVL+ +PGIG+GP++YR+TALAIQDALA+NYD++AYVV+AKF NNLGYLPQEP+RRLASIL E+ RG+S RAPVAV GHSAGAFLAY+AALTR+QAFVHLGSTLNSRGVLPW PRSV+ +PKPILQLLGEMDGYIRFTGGALEYAEVE LMAKKGFED LL+KPVV+LPGVSH+QFGDG QSK ARMSGRRDLPPYV+LQEAHRMTGKIV +FLA HLFP NG+ARV GA+ +R AFEATGRMVRPYL+E T QAEDDFIRWAQAEVASVEGVGRNSVRA ++ +E EFVYSKP LD ESEYLQVCVRK Q+ I+IGFTKQISPA KMKRQEAVVQ LRRYPSKKAPTAAELN RTFQKALE+VSEEARRRYDRYGRKLEF+ADDEITAERGGGPAWVA PLEVK RVEDPMRVTVR+PVLYTPIDTLPRFAGMCYMKLLTPAQA+EWICHDA++PW
Sbjct: 5 RGRATPALMCLLFLLLFAQPAASAMASEAFIQPAASSCGSSFQASAPGKISSAFLCGPTSSQIASPLANFLERPVSQEAGRTRQQTMALPSIGRILTAVPRFVGRKIMDGGDAIYVKKSLFLPPGSRS------------SGTS--------SPQEDTSSQPPTSVEADMVLVLFPGIGMGPAAYRETALAIQDALAANYDVKAYVVVAKFFNNLGYLPQEPERRLASILTEVSLRGVSARAPVAVAGHSAGAFLAYEAALTRSQAFVHLGSTLNSRGVLPWKPRSVLAFPKPILQLLGEMDGYIRFTGGALEYAEVESLMAKKGFEDALLDKPVVLLPGVSHQQFGDGSQSKAARMSGRRDLPPYVALQEAHRMTGKIVASFLAYHLFPLNGRARVAGASVLRQAFEATGRMVRPYLDESTPQAEDDFIRWAQAEVASVEGVGRNSVRALLYESEGEFVYSKPFLDTESEYLQVCVRKVQEA-AIRIGFTKQISPALDFKMKRQEAVVQALRRYPSKKAPTAAELNHRTFQKALEKVSEEARRRYDRYGRKLEFIADDEITAERGGGPAWVATPLEVKARVEDPMRVTVRSPVLYTPIDTLPRFAGMCYMKLLTPAQAVEWICHDAYVPW 614
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp TTCGGACACTTGTTGGCGCAATCGCATTTCTGAGCGAGGGTAGGCTGAAA TGATGACCGCAGTGCCCTCAAGCACGCCACAAAACTAAACTGGGGGCAAT AGGGCACAGCTAAATGTGCCTTTCCCTCTACCTCATAGAGCCATCTGCGT GGCTCACTCACGAACCCCAATCATTTGCGTTTCCCCTCACATTGCACAGA GCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGG GCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACT GTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGT CCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCC CCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCC ACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTA GCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTG ATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCC AGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTG GCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAGGACAA ACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATTTTCTA CCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCA TTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGGTCATC GCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCG CCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGG CCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGAC GCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAA TAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCA AGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGTTCACT GGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGG ATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGA GTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGT GGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAAT GACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAA ACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAG GCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAGCAGGC GGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGG GAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAG TTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGT GTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTTCACGA AACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTG GTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGA ATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGG CGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGAC GATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCC TTTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAG CCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAGGCATG TGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCA TGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCGCTTGT TCGAGTTTTCATCTTCCCC back to topprotein sequence of NO01G04850.1 >NO01G04850.1-protein ID=NO01G04850.1-protein|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp MFSRCRRAGGRGATPRSMRLLVSLCRLVLLVVSAEAFRGLIRPSPSSSSS SAPRVLATATAAPSSSFSPRLLAEHLSWPPASRNSRTRMPSMVMPSVAKV LTAVPRFLGRKLMDGGDAIYLKKCLFLPPGSSNVAAAITSSTSAIGGTST RDDSKENASQGQTSPFPPPPNTDMVLIFYPGIGLGPSSYRDTALAIQDAL ASNYDIQAYVVIAKFMNNLGYLPQEPQRRLASILAELGERGISPRAPVAV VGHSAGAFLAYDAALTRAQAFVHLGSTLNSRGVLPWTPRSVVEYPKPILQ LLGEMDGYIRFTGGALEYAEVEGLMAKKGFEDVLLEKPVVVLPGVSHEQF GDGQQSKMARMSGRRDLPPYVSLQEAHRMTGKIVGAFLALHLFPENGQAR VGGANTVRSAFEATGRMVRPYLNEMTEQAEDDFIRWAQAEVASVEGVGRN SVRACVFHTEQEFVYSKPTLDGESEYLQVCVRKQQQTNTIKIGFTKQISP AFGLKMKRQEAVVQVLRRYPSKKAPTAAELNRRTFQKALERVSEEARRRY DRYGRKLEFMADDEITAERGGGPAWVAAPLEVKPRVEDPMRVTVRAPVLY TPIDTLPRFAGMCYMKLLTPAQAIEWICHDAFIPWDRKV* back to topmRNA from alignment at chr1:1282839..1285007- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr1:1282839..1285007- (Nannochloropsis oceanica) TTCGGACACTTGTTGGCGCAATCGCATTTCTGAGCGAGGGTAGGCTGAAA
TGATGACCGCAGTGCCCTCAAGCACGCCACAAAACTAAACTGGGGGCAAT
AGGGCACAGCTAAATGTGCCTTTCCCTCTACCTCATAGAGCCATCTGCGT
GGCTCACTCACGAACCCCAATCATTTGCGTTTCCCCTCACATTGCACAGA
GCAACGTGGATTTCATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGG
GCCACTCCAAGAAGCATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACT
GTTAGTGGTCAGTGCCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGT
CCTCGTCATCCTCCTCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCC
CCTTCCTCCTCCTTCTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCC
ACCCGCGTCAAGAAACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTA
GCGTTGCAAAGGTTCTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTG
ATGGATGGAGGCGACGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCC
AGGGAGCAGTAACGTTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTG
GCGGCACCAGCACAAGAGATGACAGCAAGGAAAACGCTTCACAAGGACAA
ACATCGCCCTTCCCCCCTCCCCCCAACACTGACATGGTCCTAATTTTCTA
CCCTGGCATCGGACTCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCA
TTCAAGACGCCCTTGCGTCAAATTACGACATTCAAGCCTATGTGGTCATC
GCAAAGTTTATGAACAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCG
CCTCGCGTCCATTCTAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGG
CCCCTGTTGCGGTTGTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGAC
GCCGCGTTAACCCGTGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAA
TAGCCGAGGAGTACTGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCA
AGCCGATTTTGCAGTTGCTGGGGGAGATGGATGGATATATCAGGTTCACT
GGTGGGGCGCTTGAGTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGG
ATTCGAGGACGTGTTGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGA
GTCATGAGCAGTTTGGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGT
GGGAGGAGGGATTTACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAAT
GACGGGGAAGATCGTGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAA
ACGGGCAGGCGAGAGTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAG
GCGACAGGACGGATGGTACGGCCATACTTGAATGAAATGACCGAGCAGGC
GGAGGATGATTTTATCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGG
GAGTGGGAAGGAATAGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAG
TTCGTGTATTCGAAGCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGT
GTGCGTGCGGAAGCAGCAGCAGACGAACACGATCAAGATCGGGTTCACGA
AACAAATTTCCCCGGCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTG
GTGCAGGTGTTGAGGCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGA
ATTGAATCGGAGGACGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGG
CGAGGAGGAGGTACGATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGAC
GATGAGATCACGGCAGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCC
TTTGGAGGTGAAGCCACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAG
CCCCGGTGCTGTACACACCCATTGACACGCTGCCGAGGTTTGCAGGCATG
TGTTATATGAAGCTCTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCA
TGATGCTTTTATCCCTTGGGATAGGAAGGTTTGATGTGTTTTTCGCTTGT
TCGAGTTTTCATCTTCCCC back to topCoding sequence (CDS) from alignment at chr1:1282839..1285007- >NO01G04850.1 ID=NO01G04850.1|Name=NO01G04850.1|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at chr1:1282839..1285007- (Nannochloropsis oceanica) ATGTTTTCACGCTGCCGCCGGGCGGGAGGCCGAGGGGCCACTCCAAGAAG CATGCGGTTGCTCGTCAGTTTGTGCCGGCTTGTACTGTTAGTGGTCAGTG CCGAGGCGTTCAGGGGGCTGATACGGCCATCGCCGTCCTCGTCATCCTCC TCCGCTCCCCGTGTTCTAGCCACGGCCACCGCGGCCCCTTCCTCCTCCTT CTCCCCTCGCCTACTCGCCGAGCACCTCTCATGGCCACCCGCGTCAAGAA ACAGTCGGACGCGCATGCCAAGCATGGTCATGCCTAGCGTTGCAAAGGTT CTGACCGCTGTGCCTCGTTTCCTGGGCCGGAAATTGATGGATGGAGGCGA CGCTATATACCTCAAGAAATGCCTCTTCCTCCCTCCAGGGAGCAGTAACG TTGCGGCTGCAATTACCAGCAGTACCAGCGCAATTGGCGGCACCAGCACA AGAGATGACAGCAAGGAAAACGCTTCACAAGGACAAACATCGCCCTTCCC CCCTCCCCCCAACACTGACATGGTCCTAATTTTCTACCCTGGCATCGGAC TCGGTCCCTCCTCCTATCGCGACACCGCCCTGGCCATTCAAGACGCCCTT GCGTCAAATTACGACATTCAAGCCTATGTGGTCATCGCAAAGTTTATGAA CAACCTGGGCTATCTTCCCCAAGAGCCCCAGCGCCGCCTCGCGTCCATTC TAGCCGAGCTGGGCGAAAGAGGCATCTCTCCTCGGGCCCCTGTTGCGGTT GTCGGTCATTCAGCCGGGGCGTTTCTGGCTTATGACGCCGCGTTAACCCG TGCACAGGCCTTTGTTCATTTAGGTTCAACGCTAAATAGCCGAGGAGTAC TGCCGTGGACGCCACGAAGCGTGGTGGAGTACCCCAAGCCGATTTTGCAG TTGCTGGGGGAGATGGATGGATATATCAGGTTCACTGGTGGGGCGCTTGA GTATGCGGAGGTGGAGGGGTTGATGGCGAAGAAAGGATTCGAGGACGTGT TGCTTGAGAAGCCGGTTGTGGTGTTGCCCGGGGTGAGTCATGAGCAGTTT GGGGACGGGCAGCAGAGTAAAATGGCTCGTATGAGTGGGAGGAGGGATTT ACCGCCTTATGTGTCATTGCAAGAGGCGCATCGAATGACGGGGAAGATCG TGGGGGCGTTTCTGGCGTTGCATTTATTTCCTGAAAACGGGCAGGCGAGA GTAGGCGGAGCGAATACCGTGCGGTCGGCGTTTGAGGCGACAGGACGGAT GGTACGGCCATACTTGAATGAAATGACCGAGCAGGCGGAGGATGATTTTA TCAGGTGGGCTCAAGCGGAGGTGGCGTCCGTGGAGGGAGTGGGAAGGAAT AGCGTGCGTGCCTGCGTGTTCCACACGGAGCAGGAGTTCGTGTATTCGAA GCCGACCTTGGACGGGGAGAGTGAGTATTTACAGGTGTGCGTGCGGAAGC AGCAGCAGACGAACACGATCAAGATCGGGTTCACGAAACAAATTTCCCCG GCGTTTGGACTGAAAATGAAGAGACAAGAAGCGGTGGTGCAGGTGTTGAG GCGGTACCCATCGAAAAAGGCCCCCACGGCCGCCGAATTGAATCGGAGGA CGTTTCAAAAGGCGCTGGAGAGGGTGAGTGAGGAGGCGAGGAGGAGGTAC GATAGGTACGGGAGGAAGCTGGAGTTTATGGCAGACGATGAGATCACGGC AGAGAGGGGTGGGGGGCCTGCGTGGGTGGCGGCGCCTTTGGAGGTGAAGC CACGGGTGGAGGATCCGATGAGGGTGACCGTGCGAGCCCCGGTGCTGTAC ACACCCATTGACACGCTGCCGAGGTTTGCAGGCATGTGTTATATGAAGCT CTTGACGCCCGCACAAGCCATTGAGTGGATCTGTCATGATGCTTTTATCC CTTGGGATAGGAAGGTTTGA back to top
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