NO01G04460.1, NO01G04460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G04460.1
Unique NameNO01G04460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1179
Alignment locationchr1:1181699..1183067 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1181699..1183067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G04460.1 vs.
Match: EWM29344.1 (DnaJ subfamily C member 28 [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 3.600e-147
Identity = 266/364 (73.08%), Postives = 307/364 (84.34%), Query Frame = 0 
Query:   29 RHLSSNAPTPTQIIPETDPQRKQDGSSNEFRKKKNRLTHNAGVAGRQFLTHPGIPAGTMFAREEMAIKKRMIDTRESVQKHLSKRFGAADELLEEQGEDAQNRMERGRRTGVASLVEERIQLSMIRGEFANLKHKGKLERERTPGLDRTTDMFMDVLKRNGVLPEWIQRQKRLNGMTDLLRRRLEVEYARACMDANPQLELVQGDVPLARTPSLASFSARVHRINSIAEDCEVINRELLTYNLQVPALHLQRLKLQLDSLIAEATLHVPDSYQEARKLYRNADREGLLGVTALMEHRLDFFSEDGSVYQGGGGMKSRTYWLEKGGVDGGRGERKKRDDAGHHISELMMIPIDSLSRALARLFSI 393
            RHL+  A      +P T  ++ ++G  N  R+K++R TH +GV+GRQFLTHPG+PAGTMFAREEMA+KKRM++T+E VQKHL+KR G+AD++LEEQGEDAQNR+ERGRRTGVASLVEERIQLSMIRGEFANLK +GKLERERTPGLDRTTD+FMDVLKRNGVLPEWIQRQKR+  MT LL+RRL VEYARACMDANP+LE    DVP  RTP+  +FSARVH + SIAEDC VIN E+LTYNLQVPALHLQRLKL L  LIAEA L  P SYQEAR+LYR ADREGLLGVTALMEHRLD+FS+DGS+YQGGGG    TYW ++ G+  G+  RK+RD+A  HIS+LMMIPIDSLSRALARLFSI
Sbjct:   38 RHLTDAATHQPAALPSTQEKKGRNGDQNSSRRKRSRQTHASGVSGRQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKLERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI 401
The following BLAST results are available for this feature:
BLAST of NO01G04460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29344.13.600e-14773.08DnaJ subfamily C member 28 [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G04460NO01G04460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G04460.1NO01G04460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G04460.1.cds1NO01G04460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G04460.1.cds2NO01G04460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G04460.1 ID=NO01G04460.1|Name=NO01G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATCTCC
ACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCAGCA
ATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGAAAG
CAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTACGCA
TAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATACCTG
CAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATGATC
GATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGCCGC
GGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGGAAC
GGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAATTG
AGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATTGGA
GCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGGATG
TGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAGCGG
TTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTATGC
ACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAGACG
TGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTGCAT
CGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCTTTT
GACGTATAATTTACAAGTGCCAGCCCTCCACCTCCAACGCCTCAAGCTCC
AACTCGATTCCTTAATCGCAGAGGCAACATTACATGTGCCCGACAGCTAT
CAAGAAGCGCGAAAGCTATACCGAAACGCAGACAGAGAGGGCTTGCTGGG
GGTGACTGCGTTGATGGAGCATCGTCTCGACTTCTTCTCGGAAGACGGGT
CCGTGTATCAGGGAGGGGGAGGAATGAAGTCCAGGACTTATTGGCTGGAA
AAGGGAGGGGTTGACGGAGGAAGGGGGGAAAGAAAAAAGAGGGATGATGC
GGGGCATCATATATCGGAGTTGATGATGATTCCGATTGACTCCTTGAGTA
GGGCCTTGGCGAGATTGTTCAGTATCTGA
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protein sequence of NO01G04460.1

>NO01G04460.1-protein ID=NO01G04460.1-protein|Name=NO01G04460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MRSCITTSLPSPPRPSPRAPAVHGLAVLRHLSSNAPTPTQIIPETDPQRK
QDGSSNEFRKKKNRLTHNAGVAGRQFLTHPGIPAGTMFAREEMAIKKRMI
DTRESVQKHLSKRFGAADELLEEQGEDAQNRMERGRRTGVASLVEERIQL
SMIRGEFANLKHKGKLERERTPGLDRTTDMFMDVLKRNGVLPEWIQRQKR
LNGMTDLLRRRLEVEYARACMDANPQLELVQGDVPLARTPSLASFSARVH
RINSIAEDCEVINRELLTYNLQVPALHLQRLKLQLDSLIAEATLHVPDSY
QEARKLYRNADREGLLGVTALMEHRLDFFSEDGSVYQGGGGMKSRTYWLE
KGGVDGGRGERKKRDDAGHHISELMMIPIDSLSRALARLFSI*
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mRNA from alignment at chr1:1181699..1183067+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G04460.1 ID=NO01G04460.1|Name=NO01G04460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at chr1:1181699..1183067+ (Nannochloropsis oceanica)
ATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATCTCC
ACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCAGCA
ATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGAAAG
CAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTACGCA
TAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATACCTG
CAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATGATC
GATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGCCGC
GGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGGAAC
GGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAATTG
AGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATTGGA
GCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGGATG
TGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAGCGG
TTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTATGC
ACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAGACG
TGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTGCAT
CGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCTTTT
GACGTATAATTTACAAGGTAGGGTGCAAGGGGCTGAAAGGTGGAATGTGA
TGGAGGCGTGCTTTGTAGACGTTTGGTAAATCAATAAGGACATACTTACG
CGAGTCAGTTATCATTTTGTATGCCTACACAGAACCCTTGTTTATTTATC
TTACCTCCATTTCCCTATGAGAGCCAACCCTTCATGATCTCTGTCCTATA
ATCACAGTGCCAGCCCTCCACCTCCAACGCCTCAAGCTCCAACTCGATTC
CTTAATCGCAGAGGCAACATTACATGTGCCCGACAGCTATCAAGAAGCGC
GAAAGCTATACCGAAACGCAGACAGAGAGGGCTTGCTGGGGGTGACTGCG
TTGATGGAGCATCGTCTCGACTTCTTCTCGGAAGACGGGTCCGTGTATCA
GGGAGGGGGAGGAATGAAGTCCAGGACTTATTGGCTGGAAAAGGGAGGGG
TTGACGGAGGAAGGGGGGAAAGAAAAAAGAGGGATGATGCGGGGCATCAT
ATATCGGAGTTGATGATGATTCCGATTGACTCCTTGAGTAGGGCCTTGGC
GAGATTGTTCAGTATCTGA
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Coding sequence (CDS) from alignment at chr1:1181699..1183067+

>NO01G04460.1 ID=NO01G04460.1|Name=NO01G04460.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr1:1181699..1183067+ (Nannochloropsis oceanica)
ATGCGAAGCTGCATAACCACCTCGCTGCCTAGTCCACCCAGGCCATCTCC
ACGTGCCCCAGCCGTCCACGGTCTTGCTGTTCTTCGCCACCTCAGCAGCA
ATGCCCCGACTCCAACACAAATTATTCCAGAGACGGACCCGCAGCGAAAG
CAAGATGGCAGCAGTAACGAATTTCGCAAGAAAAAAAATCGACTTACGCA
TAACGCAGGCGTGGCGGGGAGGCAATTTCTGACGCATCCCGGCATACCTG
CAGGGACAATGTTTGCTAGAGAAGAAATGGCAATAAAGAAACGCATGATC
GATACGCGAGAAAGCGTGCAGAAGCATCTCTCCAAACGCTTTGGTGCCGC
GGATGAGCTTCTTGAGGAACAGGGCGAAGATGCTCAAAACCGTATGGAAC
GGGGTCGGCGCACAGGCGTGGCATCACTGGTGGAGGAGAGAATTCAATTG
AGCATGATTCGTGGGGAGTTTGCCAATTTGAAACACAAGGGGAAATTGGA
GCGGGAGAGGACGCCAGGCCTTGATCGCACGACTGATATGTTTATGGATG
TGCTTAAGAGGAATGGTGTACTGCCAGAGTGGATCCAGCGACAAAAGCGG
TTGAATGGCATGACGGACTTGCTTCGACGACGGTTGGAGGTGGAGTATGC
ACGTGCCTGCATGGATGCCAACCCTCAGCTTGAGTTGGTGCAAGGAGACG
TGCCCCTGGCCCGGACTCCCTCTCTTGCCAGCTTTTCGGCAAGGGTGCAT
CGAATCAATTCCATAGCCGAGGACTGCGAGGTGATTAATAGAGAGCTTTT
GACGTATAATTTACAAGTGCCAGCCCTCCACCTCCAACGCCTCAAGCTCC
AACTCGATTCCTTAATCGCAGAGGCAACATTACATGTGCCCGACAGCTAT
CAAGAAGCGCGAAAGCTATACCGAAACGCAGACAGAGAGGGCTTGCTGGG
GGTGACTGCGTTGATGGAGCATCGTCTCGACTTCTTCTCGGAAGACGGGT
CCGTGTATCAGGGAGGGGGAGGAATGAAGTCCAGGACTTATTGGCTGGAA
AAGGGAGGGGTTGACGGAGGAAGGGGGGAAAGAAAAAAGAGGGATGATGC
GGGGCATCATATATCGGAGTTGATGATGATTCCGATTGACTCCTTGAGTA
GGGCCTTGGCGAGATTGTTCAGTATCTGA
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Synonyms
Publications