NO01G03810.1, NO01G03810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03810.1
Unique NameNO01G03810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr1:1022589..1025196 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1022589..1025196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03810.1 vs.
Match: EWM29318.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 965.3 bits (2494), Expect = 9.200e-278
Identity = 514/638 (80.56%), Postives = 551/638 (86.36%), Query Frame = 0
Query:    1 MRLHIQGALLACYFIAER----QAFIFPSLRPQSPIQCSITNPPAPSSASNTNSRRILVAPAWMTPQSSSSSSPPSSSIQEKG----KKSPAAAAAAAVEVTAAAAVPAAGKEDAVPTG-DVGVAKALAKPSESRAAELRQAKEQERIKNKKFINPIEIPIKAGRAARRALESLGQVEEPAPKNPDDYRLYFDKKFMYAIPAPSEKTPTVLVVGATGETGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLADLASLRTACDGADKAVYVAQARDDGDARTVEYLGLRNLAQAFQDTRLSETGKRVTTKRTLFKFRKPVDRDVWGVTQPLVDGAEGAWTVQDERSGRPAFVGSLPVGPGGSIALESKKLGLNLSKFGGLLMLFKAQGDAQTTFRFVIRTSAFAEQGIQYELALPLVRNRFTAFRMNFRDFVPMKDGSPYKGVLGGLGGVAALDPSDVKQFAVMVKREPAAAAGVDEAIANPAFSLTMEGIKVFRAREQPDVVVLSSSDITPSTALKSLSEMERDPASFERVERKNYYKAQGELAMKNTGLAYCIVRISDFTSSPTEGRPLSVSKSGNNMGLISRPDTADVLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELVDLP 630
            M+  +Q A LAC   A       AF+FPS RPQS   CSI +  +P +AS  +  RI +AP+WM P SSSSSS  S+S         +KS     + A   T  +  PA G+E++ P   DVG+AKALAKPSESRAAELRQAKE ER KNKKF+NPIEIPIKAGRAARRALESLGQVEEPAPKNP+DYRLYFDKKFMYAIPAP EKTPTVLVVGATG+ GRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDL+DL+SLRTACDGADK VYVAQAR+DGDARTVEYLGLRNLAQAFQDTR+S+ GKRV TKRTLFKFRKP DR VW V  P  +GAEGAWTVQDERSGRPAFVGSLPVGPGGSI LESKKLGLNLSKFGGLLMLFKAQGDAQT+FRFVIRTSA+AEQG+QYE+ALPLVRNRFTAFRMNFRDFVPMKDG+PY GVLGGLGGV ALDP DVKQFAVM  RE  AAAGVD A+ANPAF+LTMEGIKVFRAREQ DVV+LSSSDITP TALKSLSEMERDPASFERVER NYY+AQGELAMKN GLAYCIVRISDFTSSPTEGRPLSVS+SGNNMGLISRPD A VLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELV+LP
Sbjct:    1 MQRSVQAAFLACILTASYIDLGHAFVFPSSRPQST-PCSIVST-SPYTASPDSRARITIAPSWMVPPSSSSSSSSSTSSSPAAGVTQEKSNRRGGSPASPSTKNSEAPAPGEEESNPPAVDVGIAKALAKPSESRAAELRQAKEAERTKNKKFLNPIEIPIKAGRAARRALESLGQVEEPAPKNPEDYRLYFDKKFMYAIPAPGEKTPTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLSDLSSLRTACDGADKVVYVAQAREDGDARTVEYLGLRNLAQAFQDTRVSDAGKRVATKRTLFKFRKPADRGVWAVATPSAEGAEGAWTVQDERSGRPAFVGSLPVGPGGSIVLESKKLGLNLSKFGGLLMLFKAQGDAQTSFRFVIRTSAYAEQGVQYEIALPLVRNRFTAFRMNFRDFVPMKDGTPYAGVLGGLGGVTALDPGDVKQFAVMAVREGGAAAGVDAAVANPAFALTMEGIKVFRAREQADVVLLSSSDITPKTALKSLSEMERDPASFERVERGNYYRAQGELAMKNAGLAYCIVRISDFTSSPTEGRPLSVSRSGNNMGLISRPDAATVLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELVELP 636          
The following BLAST results are available for this feature:
BLAST of NO01G03810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29318.19.200e-27880.56NAD(P)-binding domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03810NO01G03810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03810.1NO01G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03810.1.cds1NO01G03810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp
GAGTGCTTCGGACGGACGCTTTATTTTCTGGCGCTCGACCTCGAGTGCTC
CTTTCCGAGCTGCTGCACGTTTGATGGCACATTTCATCACATCGTCATGC
GTGGTGTGGCTGCAGCTCGCTCTTGCGTAATCCAAAGCAAATGCATTTTC
CTGATGTCATACCTTGCACAGAGTTGGCTGCACCAAGGACACACAAGACA
AAATGTAGTTGGCAATGTTCTCCTTCCTACTTCTGTGTCTGGCTGTGTAT
GTTACTCGCATTTCCCCTTAACTATTGATGATGCATATCCATGAGCAATA
CACGCAAGCGGGTTCTGACCATGTATACCAATCCACCATAATCACGACCG
ATCGCAAACGCAATGGCCATAGGCAAATCAACACAAGAAACGAGACGTTT
GGATCGCCGCAGTCACAAGCAAAACGCCAAGGCAGTGTTCCCCTTACTTC
GCCTCCTCCCACTTTTCACGCACGGCCGAGCAGCAGCGAGTTTCCCATCG
CATCAAGCCTCCACCCACGCAATAAGCCATGCGACTCCACATTCAAGGGG
CATTACTTGCCTGCTACTTTATAGCCGAGAGACAGGCCTTTATCTTCCCG
TCTCTTCGGCCACAAAGCCCCATCCAATGTAGCATAACCAACCCCCCTGC
CCCCTCCTCCGCCAGCAACACCAATAGCAGAAGAATATTAGTCGCCCCAG
CATGGATGACCCCCCAGTCCTCCTCATCATCCTCTCCTCCCTCCTCCTCC
ATTCAAGAAAAGGGCAAAAAGAGCCCGGCAGCTGCAGCAGCAGCAGCAGT
AGAAGTAACAGCAGCAGCAGCCGTGCCTGCCGCTGGGAAAGAGGACGCAG
TTCCCACAGGGGACGTCGGGGTAGCCAAAGCCCTCGCTAAACCTAGCGAA
TCTCGTGCAGCTGAATTACGGCAAGCCAAAGAGCAAGAACGGATCAAGAA
CAAGAAGTTTATCAACCCGATAGAGATCCCTATTAAGGCAGGGCGGGCAG
CGCGACGGGCGTTGGAAAGCTTGGGTCAAGTCGAGGAGCCTGCTCCCAAG
AACCCCGACGATTACCGCCTGTATTTTGATAAAAAGTTCATGTATGCCAT
CCCGGCACCGAGTGAGAAAACTCCCACTGTGTTGGTGGTGGGAGCGACGG
GGGAGACCGGGCGGCAGGTGGTGAGGAAATTGATTCTGAAGGGGTATCGG
GTGCAGGTTTTGGTGAGGAATTTGTACTCGACCACGCTCAATTTGTTGGG
CACGGGCGTGTCGTACGTGAAGGGGGACCTAGCGGACCTAGCTTCGTTGA
GAACGGCGTGTGATGGGGCGGATAAGGCGGTGTACGTGGCGCAGGCGAGG
GATGATGGGGATGCTCGTACGGTGGAGTACTTGGGCCTGCGCAATCTGGC
ACAGGCGTTTCAGGACACCAGATTGTCTGAGACAGGGAAGAGGGTCACGA
CAAAGAGGACATTGTTCAAGTTCCGCAAGCCCGTTGACAGGGATGTCTGG
GGCGTGACTCAGCCACTGGTCGATGGAGCGGAAGGTGCGTGGACGGTCCA
GGACGAGCGGTCGGGCCGGCCTGCCTTTGTGGGGAGTTTGCCTGTGGGTC
CCGGAGGATCCATTGCATTAGAGAGTAAGAAATTAGGGCTGAATCTCTCA
AAGTTTGGGGGTTTGTTGATGTTGTTCAAGGCCCAGGGGGATGCCCAGAC
CACTTTCCGGTTTGTGATACGCACGAGTGCATTTGCGGAACAGGGGATCC
AATATGAGTTAGCCCTCCCGCTGGTTCGAAATCGATTTACCGCTTTCAGG
ATGAATTTTAGAGACTTTGTGCCGATGAAGGACGGGAGTCCTTACAAAGG
TGTACTCGGCGGGTTGGGGGGCGTGGCGGCGCTGGACCCGAGTGACGTAA
AGCAATTCGCGGTGATGGTGAAAAGAGAGCCGGCGGCGGCGGCGGGGGTG
GACGAGGCGATTGCCAACCCTGCCTTCAGTCTGACGATGGAGGGGATTAA
GGTGTTCAGGGCGAGGGAACAGCCGGATGTAGTCGTGTTAAGTTCATCGG
ACATTACGCCATCGACGGCACTGAAGAGTTTGTCGGAAATGGAAAGGGAC
CCTGCATCGTTTGAGCGAGTTGAAAGGAAAAATTACTATAAGGCCCAGGG
AGAACTAGCGATGAAGAATACGGGGCTGGCGTATTGTATTGTAAGGATTT
CGGACTTTACCTCCAGCCCGACGGAGGGAAGGCCGTTGAGCGTCTCGAAG
AGTGGGAATAATATGGGCCTTATCTCCAGGCCGGACACGGCTGATGTTTT
GATCAATTGCTTGTTCAACCCCACGGTTTGCAATACGGAGATTTATGCGA
GTGAAAATCCGAGGTACGGAGACCGAGATATCCAAAGGTTGTTGAATGAA
TTGGTGGATTTGCCGTTTTAGATTGGAGAGGGGGGGGAAGGGAGGGAGGG
AGAAAGGAAGGAAGGGAAGGCAGGTGACAATTTATGATAGGGGAGAGTGA
GTGAAATATAACAACAGGGAAGAAGAGAAAAAAAAGGCGACCGGAAGTAA
TGCACGAAGAGGATAAAAAGAAAGAAAGAAAAAAGATGAAAAAGAAGTAG
AATCAAAA
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protein sequence of NO01G03810.1

>NO01G03810.1-protein ID=NO01G03810.1-protein|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MRLHIQGALLACYFIAERQAFIFPSLRPQSPIQCSITNPPAPSSASNTNS
RRILVAPAWMTPQSSSSSSPPSSSIQEKGKKSPAAAAAAAVEVTAAAAVP
AAGKEDAVPTGDVGVAKALAKPSESRAAELRQAKEQERIKNKKFINPIEI
PIKAGRAARRALESLGQVEEPAPKNPDDYRLYFDKKFMYAIPAPSEKTPT
VLVVGATGETGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGD
LADLASLRTACDGADKAVYVAQARDDGDARTVEYLGLRNLAQAFQDTRLS
ETGKRVTTKRTLFKFRKPVDRDVWGVTQPLVDGAEGAWTVQDERSGRPAF
VGSLPVGPGGSIALESKKLGLNLSKFGGLLMLFKAQGDAQTTFRFVIRTS
AFAEQGIQYELALPLVRNRFTAFRMNFRDFVPMKDGSPYKGVLGGLGGVA
ALDPSDVKQFAVMVKREPAAAAGVDEAIANPAFSLTMEGIKVFRAREQPD
VVVLSSSDITPSTALKSLSEMERDPASFERVERKNYYKAQGELAMKNTGL
AYCIVRISDFTSSPTEGRPLSVSKSGNNMGLISRPDTADVLINCLFNPTV
CNTEIYASENPRYGDRDIQRLLNELVDLPF*
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mRNA from alignment at chr1:1022589..1025196+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr1:1022589..1025196+ (Nannochloropsis oceanica)
GAGTGCTTCGGACGGACGCTTTATTTTCTGGCGCTCGACCTCGAGTGCTC CTTTCCGAGCTGCTGCACGTTTGATGGCACATTTCATCACATCGTCATGC GTGGTGTGGCTGCAGCTCGCTCTTGCGTAATCCAAAGCAAATGCATTTTC CTGATGTCATACCTTGCACAGAGTTGGCTGCACCAAGGACACACAAGACA AAATGTAGTTGGCAATGTTCTCCTTCCTACTTCTGTGTCTGGCTGTGTAT GTTACTCGCATTTCCCCTTAACTATTGATGATGCATATCCATGAGCAATA CACGCAAGCGGGTTCTGACCATGTATACCAATCCACCATAATCACGACCG ATCGCAAACGCAATGGCCATAGGCAAATCAACACAAGAAACGAGACGTTT GGATCGCCGCAGTCACAAGCAAAACGCCAAGGCAGTGTTCCCCTTACTTC GCCTCCTCCCACTTTTCACGCACGGCCGAGCAGCAGCGAGTTTCCCATCG CATCAAGCCTCCACCCACGCAATAAGCCATGCGACTCCACATTCAAGGGG CATTACTTGCCTGCTACTTTATAGCCGAGAGACAGGCCTTTATCTTCCCG TCTCTTCGGCCACAAAGCCCCATCCAATGTAGCATAACCAACCCCCCTGC CCCCTCCTCCGCCAGCAACACCAATAGCAGAAGAATATTAGTCGCCCCAG CATGGATGACCCCCCAGTCCTCCTCATCATCCTCTCCTCCCTCCTCCTCC ATTCAAGAAAAGGGCAAAAAGAGCCCGGCAGCTGCAGCAGCAGCAGCAGT AGAAGTAACAGCAGCAGCAGCCGTGCCTGCCGCTGGGAAAGAGGACGCAG TTCCCACAGGGGACGTCGGGGTAGCCAAAGCCCTCGCTAAACCTAGCGAA TCTCGTGCAGCTGAATTACGGCAAGCCAAAGAGCAAGAACGGATCAAGAA CAAGAAGTTTATCAACCCGATAGAGATCCCTATTAAGGCAGGGCGGGCAG CGCGACGGGCGTTGGAAAGCTTGGGTCAAGTCGAGGAGCCTGCTCCCAAG AACCCCGACGATTACCGCCTGTATTTTGATAAAAAGTTCATGTATGCCAT CCCGGCACCGAGTGAGAAAACTCCCACTGTGTTGGTGGTGGGAGCGACGG GGGAGACCGGGCGGCAGGTGGTGAGGAAATTGATTCTGAAGGGGTATCGG GTGCAGGTTTTGGTGAGGAATTTGTACTCGACCACGCTCAATTTGTTGGG CACGGGCGTGTCGTACGTGAAGGGGGACCTAGCGGACCTAGCTTCGTTGA GAACGGCGTGTGATGGGGCGGATAAGGCGGTGTACGTGGCGCAGGCGAGG GATGATGGGGATGCTCGTACGGTGGAGTACTTGGGCCTGCGCAATCTGGC ACAGGCGTTTCAGGACACCAGATTGTCTGAGACAGGGAAGAGGGTCACGA CAAAGAGGACATTGTTCAAGTTCCGCAAGCCCGTTGACAGGGATGTCTGG GGCGTGACTCAGCCACTGGTCGATGGAGCGGAAGGTGCGTGGACGGTCCA GGACGAGCGGTCGGGCCGGCCTGCCTTTGTGGGGAGTTTGCCTGTGGGTC CCGGAGGATCCATTGCATTAGAGAGTAAGAAATTAGGGCTGAATCTCTCA AAGTTTGGGGGTTTGTTGATGTTGTTCAAGGCCCAGGGGGATGCCCAGAC CACTTTCCGGTTTGTGATACGCACGAGTGCATTTGCGGAACAGGGGATCC AATATGAGTTAGCCCTCCCGCTGGTTCGAAATCGATTTACCGCTTTCAGG ATGAATTTTAGAGACTTTGTGCCGATGAAGGACGGGAGTCCTTACAAAGG TGTACTCGGCGGGTTGGGGGGCGTGGCGGCGCTGGACCCGAGTGACGTAA AGCAATTCGCGGTGATGGTGAAAAGAGAGCCGGCGGCGGCGGCGGGGGTG GACGAGGCGATTGCCAACCCTGCCTTCAGTCTGACGATGGAGGGGATTAA GGTGTTCAGGGCGAGGGAACAGCCGGATGTAGTCGTGTTAAGTTCATCGG ACATTACGCCATCGACGGCACTGAAGAGTTTGTCGGAAATGGAAAGGGAC CCTGCATCGTTTGAGCGAGTTGAAAGGAAAAATTACTATAAGGCCCAGGG AGAACTAGCGATGAAGAATACGGGGCTGGCGTATTGTATTGTAAGGATTT CGGACTTTACCTCCAGCCCGACGGAGGGAAGGCCGTTGAGCGTCTCGAAG AGTGGGAATAATATGGGCCTTATCTCCAGGCCGGACACGGCTGATGTTTT GATCAATTGCTTGTTCAACCCCACGGTTTGCAATACGGAGATTTATGCGA GTGAAAATCCGAGGTACGGAGACCGAGATATCCAAAGGTTGTTGAATGAA TTGGTGGATTTGCCGTTTTAGATTGGAGAGGGGGGGGAAGGGAGGGAGGG AGAAAGGAAGGAAGGGAAGGCAGGTGACAATTTATGATAGGGGAGAGTGA GTGAAATATAACAACAGGGAAGAAGAGAAAAAAAAGGCGACCGGAAGTAA TGCACGAAGAGGATAAAAAGAAAGAAAGAAAAAAGATGAAAAAGAAGTAG AATCAAAA
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Coding sequence (CDS) from alignment at chr1:1022589..1025196+

>NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr1:1022589..1025196+ (Nannochloropsis oceanica)
ATGCGACTCCACATTCAAGGGGCATTACTTGCCTGCTACTTTATAGCCGA
GAGACAGGCCTTTATCTTCCCGTCTCTTCGGCCACAAAGCCCCATCCAAT
GTAGCATAACCAACCCCCCTGCCCCCTCCTCCGCCAGCAACACCAATAGC
AGAAGAATATTAGTCGCCCCAGCATGGATGACCCCCCAGTCCTCCTCATC
ATCCTCTCCTCCCTCCTCCTCCATTCAAGAAAAGGGCAAAAAGAGCCCGG
CAGCTGCAGCAGCAGCAGCAGTAGAAGTAACAGCAGCAGCAGCCGTGCCT
GCCGCTGGGAAAGAGGACGCAGTTCCCACAGGGGACGTCGGGGTAGCCAA
AGCCCTCGCTAAACCTAGCGAATCTCGTGCAGCTGAATTACGGCAAGCCA
AAGAGCAAGAACGGATCAAGAACAAGAAGTTTATCAACCCGATAGAGATC
CCTATTAAGGCAGGGCGGGCAGCGCGACGGGCGTTGGAAAGCTTGGGTCA
AGTCGAGGAGCCTGCTCCCAAGAACCCCGACGATTACCGCCTGTATTTTG
ATAAAAAGTTCATGTATGCCATCCCGGCACCGAGTGAGAAAACTCCCACT
GTGTTGGTGGTGGGAGCGACGGGGGAGACCGGGCGGCAGGTGGTGAGGAA
ATTGATTCTGAAGGGGTATCGGGTGCAGGTTTTGGTGAGGAATTTGTACT
CGACCACGCTCAATTTGTTGGGCACGGGCGTGTCGTACGTGAAGGGGGAC
CTAGCGGACCTAGCTTCGTTGAGAACGGCGTGTGATGGGGCGGATAAGGC
GGTGTACGTGGCGCAGGCGAGGGATGATGGGGATGCTCGTACGGTGGAGT
ACTTGGGCCTGCGCAATCTGGCACAGGCGTTTCAGGACACCAGATTGTCT
GAGACAGGGAAGAGGGTCACGACAAAGAGGACATTGTTCAAGTTCCGCAA
GCCCGTTGACAGGGATGTCTGGGGCGTGACTCAGCCACTGGTCGATGGAG
CGGAAGGTGCGTGGACGGTCCAGGACGAGCGGTCGGGCCGGCCTGCCTTT
GTGGGGAGTTTGCCTGTGGGTCCCGGAGGATCCATTGCATTAGAGAGTAA
GAAATTAGGGCTGAATCTCTCAAAGTTTGGGGGTTTGTTGATGTTGTTCA
AGGCCCAGGGGGATGCCCAGACCACTTTCCGGTTTGTGATACGCACGAGT
GCATTTGCGGAACAGGGGATCCAATATGAGTTAGCCCTCCCGCTGGTTCG
AAATCGATTTACCGCTTTCAGGATGAATTTTAGAGACTTTGTGCCGATGA
AGGACGGGAGTCCTTACAAAGGTGTACTCGGCGGGTTGGGGGGCGTGGCG
GCGCTGGACCCGAGTGACGTAAAGCAATTCGCGGTGATGGTGAAAAGAGA
GCCGGCGGCGGCGGCGGGGGTGGACGAGGCGATTGCCAACCCTGCCTTCA
GTCTGACGATGGAGGGGATTAAGGTGTTCAGGGCGAGGGAACAGCCGGAT
GTAGTCGTGTTAAGTTCATCGGACATTACGCCATCGACGGCACTGAAGAG
TTTGTCGGAAATGGAAAGGGACCCTGCATCGTTTGAGCGAGTTGAAAGGA
AAAATTACTATAAGGCCCAGGGAGAACTAGCGATGAAGAATACGGGGCTG
GCGTATTGTATTGTAAGGATTTCGGACTTTACCTCCAGCCCGACGGAGGG
AAGGCCGTTGAGCGTCTCGAAGAGTGGGAATAATATGGGCCTTATCTCCA
GGCCGGACACGGCTGATGTTTTGATCAATTGCTTGTTCAACCCCACGGTT
TGCAATACGGAGATTTATGCGAGTGAAAATCCGAGGTACGGAGACCGAGA
TATCCAAAGGTTGTTGAATGAATTGGTGGATTTGCCGTTTTAG
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Synonyms
Publications