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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1022589..1025196 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03810.1 vs.
Match: EWM29318.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana]) HSP 1 Score: 965.3 bits (2494), Expect = 9.200e-278 Identity = 514/638 (80.56%), Postives = 551/638 (86.36%), Query Frame = 0
Query: 1 MRLHIQGALLACYFIAER----QAFIFPSLRPQSPIQCSITNPPAPSSASNTNSRRILVAPAWMTPQSSSSSSPPSSSIQEKG----KKSPAAAAAAAVEVTAAAAVPAAGKEDAVPTG-DVGVAKALAKPSESRAAELRQAKEQERIKNKKFINPIEIPIKAGRAARRALESLGQVEEPAPKNPDDYRLYFDKKFMYAIPAPSEKTPTVLVVGATGETGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLADLASLRTACDGADKAVYVAQARDDGDARTVEYLGLRNLAQAFQDTRLSETGKRVTTKRTLFKFRKPVDRDVWGVTQPLVDGAEGAWTVQDERSGRPAFVGSLPVGPGGSIALESKKLGLNLSKFGGLLMLFKAQGDAQTTFRFVIRTSAFAEQGIQYELALPLVRNRFTAFRMNFRDFVPMKDGSPYKGVLGGLGGVAALDPSDVKQFAVMVKREPAAAAGVDEAIANPAFSLTMEGIKVFRAREQPDVVVLSSSDITPSTALKSLSEMERDPASFERVERKNYYKAQGELAMKNTGLAYCIVRISDFTSSPTEGRPLSVSKSGNNMGLISRPDTADVLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELVDLP 630
M+ +Q A LAC A AF+FPS RPQS CSI + +P +AS + RI +AP+WM P SSSSSS S+S +KS + A T + PA G+E++ P DVG+AKALAKPSESRAAELRQAKE ER KNKKF+NPIEIPIKAGRAARRALESLGQVEEPAPKNP+DYRLYFDKKFMYAIPAP EKTPTVLVVGATG+ GRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDL+DL+SLRTACDGADK VYVAQAR+DGDARTVEYLGLRNLAQAFQDTR+S+ GKRV TKRTLFKFRKP DR VW V P +GAEGAWTVQDERSGRPAFVGSLPVGPGGSI LESKKLGLNLSKFGGLLMLFKAQGDAQT+FRFVIRTSA+AEQG+QYE+ALPLVRNRFTAFRMNFRDFVPMKDG+PY GVLGGLGGV ALDP DVKQFAVM RE AAAGVD A+ANPAF+LTMEGIKVFRAREQ DVV+LSSSDITP TALKSLSEMERDPASFERVER NYY+AQGELAMKN GLAYCIVRISDFTSSPTEGRPLSVS+SGNNMGLISRPD A VLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELV+LP
Sbjct: 1 MQRSVQAAFLACILTASYIDLGHAFVFPSSRPQST-PCSIVST-SPYTASPDSRARITIAPSWMVPPSSSSSSSSSTSSSPAAGVTQEKSNRRGGSPASPSTKNSEAPAPGEEESNPPAVDVGIAKALAKPSESRAAELRQAKEAERTKNKKFLNPIEIPIKAGRAARRALESLGQVEEPAPKNPEDYRLYFDKKFMYAIPAPGEKTPTVLVVGATGDIGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGDLSDLSSLRTACDGADKVVYVAQAREDGDARTVEYLGLRNLAQAFQDTRVSDAGKRVATKRTLFKFRKPADRGVWAVATPSAEGAEGAWTVQDERSGRPAFVGSLPVGPGGSIVLESKKLGLNLSKFGGLLMLFKAQGDAQTSFRFVIRTSAYAEQGVQYEIALPLVRNRFTAFRMNFRDFVPMKDGTPYAGVLGGLGGVTALDPGDVKQFAVMAVREGGAAAGVDAAVANPAFALTMEGIKVFRAREQADVVLLSSSDITPKTALKSLSEMERDPASFERVERGNYYRAQGELAMKNAGLAYCIVRISDFTSSPTEGRPLSVSRSGNNMGLISRPDAATVLINCLFNPTVCNTEIYASENPRYGDRDIQRLLNELVELP 636
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp GAGTGCTTCGGACGGACGCTTTATTTTCTGGCGCTCGACCTCGAGTGCTC CTTTCCGAGCTGCTGCACGTTTGATGGCACATTTCATCACATCGTCATGC GTGGTGTGGCTGCAGCTCGCTCTTGCGTAATCCAAAGCAAATGCATTTTC CTGATGTCATACCTTGCACAGAGTTGGCTGCACCAAGGACACACAAGACA AAATGTAGTTGGCAATGTTCTCCTTCCTACTTCTGTGTCTGGCTGTGTAT GTTACTCGCATTTCCCCTTAACTATTGATGATGCATATCCATGAGCAATA CACGCAAGCGGGTTCTGACCATGTATACCAATCCACCATAATCACGACCG ATCGCAAACGCAATGGCCATAGGCAAATCAACACAAGAAACGAGACGTTT GGATCGCCGCAGTCACAAGCAAAACGCCAAGGCAGTGTTCCCCTTACTTC GCCTCCTCCCACTTTTCACGCACGGCCGAGCAGCAGCGAGTTTCCCATCG CATCAAGCCTCCACCCACGCAATAAGCCATGCGACTCCACATTCAAGGGG CATTACTTGCCTGCTACTTTATAGCCGAGAGACAGGCCTTTATCTTCCCG TCTCTTCGGCCACAAAGCCCCATCCAATGTAGCATAACCAACCCCCCTGC CCCCTCCTCCGCCAGCAACACCAATAGCAGAAGAATATTAGTCGCCCCAG CATGGATGACCCCCCAGTCCTCCTCATCATCCTCTCCTCCCTCCTCCTCC ATTCAAGAAAAGGGCAAAAAGAGCCCGGCAGCTGCAGCAGCAGCAGCAGT AGAAGTAACAGCAGCAGCAGCCGTGCCTGCCGCTGGGAAAGAGGACGCAG TTCCCACAGGGGACGTCGGGGTAGCCAAAGCCCTCGCTAAACCTAGCGAA TCTCGTGCAGCTGAATTACGGCAAGCCAAAGAGCAAGAACGGATCAAGAA CAAGAAGTTTATCAACCCGATAGAGATCCCTATTAAGGCAGGGCGGGCAG CGCGACGGGCGTTGGAAAGCTTGGGTCAAGTCGAGGAGCCTGCTCCCAAG AACCCCGACGATTACCGCCTGTATTTTGATAAAAAGTTCATGTATGCCAT CCCGGCACCGAGTGAGAAAACTCCCACTGTGTTGGTGGTGGGAGCGACGG GGGAGACCGGGCGGCAGGTGGTGAGGAAATTGATTCTGAAGGGGTATCGG GTGCAGGTTTTGGTGAGGAATTTGTACTCGACCACGCTCAATTTGTTGGG CACGGGCGTGTCGTACGTGAAGGGGGACCTAGCGGACCTAGCTTCGTTGA GAACGGCGTGTGATGGGGCGGATAAGGCGGTGTACGTGGCGCAGGCGAGG GATGATGGGGATGCTCGTACGGTGGAGTACTTGGGCCTGCGCAATCTGGC ACAGGCGTTTCAGGACACCAGATTGTCTGAGACAGGGAAGAGGGTCACGA CAAAGAGGACATTGTTCAAGTTCCGCAAGCCCGTTGACAGGGATGTCTGG GGCGTGACTCAGCCACTGGTCGATGGAGCGGAAGGTGCGTGGACGGTCCA GGACGAGCGGTCGGGCCGGCCTGCCTTTGTGGGGAGTTTGCCTGTGGGTC CCGGAGGATCCATTGCATTAGAGAGTAAGAAATTAGGGCTGAATCTCTCA AAGTTTGGGGGTTTGTTGATGTTGTTCAAGGCCCAGGGGGATGCCCAGAC CACTTTCCGGTTTGTGATACGCACGAGTGCATTTGCGGAACAGGGGATCC AATATGAGTTAGCCCTCCCGCTGGTTCGAAATCGATTTACCGCTTTCAGG ATGAATTTTAGAGACTTTGTGCCGATGAAGGACGGGAGTCCTTACAAAGG TGTACTCGGCGGGTTGGGGGGCGTGGCGGCGCTGGACCCGAGTGACGTAA AGCAATTCGCGGTGATGGTGAAAAGAGAGCCGGCGGCGGCGGCGGGGGTG GACGAGGCGATTGCCAACCCTGCCTTCAGTCTGACGATGGAGGGGATTAA GGTGTTCAGGGCGAGGGAACAGCCGGATGTAGTCGTGTTAAGTTCATCGG ACATTACGCCATCGACGGCACTGAAGAGTTTGTCGGAAATGGAAAGGGAC CCTGCATCGTTTGAGCGAGTTGAAAGGAAAAATTACTATAAGGCCCAGGG AGAACTAGCGATGAAGAATACGGGGCTGGCGTATTGTATTGTAAGGATTT CGGACTTTACCTCCAGCCCGACGGAGGGAAGGCCGTTGAGCGTCTCGAAG AGTGGGAATAATATGGGCCTTATCTCCAGGCCGGACACGGCTGATGTTTT GATCAATTGCTTGTTCAACCCCACGGTTTGCAATACGGAGATTTATGCGA GTGAAAATCCGAGGTACGGAGACCGAGATATCCAAAGGTTGTTGAATGAA TTGGTGGATTTGCCGTTTTAGATTGGAGAGGGGGGGGAAGGGAGGGAGGG AGAAAGGAAGGAAGGGAAGGCAGGTGACAATTTATGATAGGGGAGAGTGA GTGAAATATAACAACAGGGAAGAAGAGAAAAAAAAGGCGACCGGAAGTAA TGCACGAAGAGGATAAAAAGAAAGAAAGAAAAAAGATGAAAAAGAAGTAG AATCAAAA back to topprotein sequence of NO01G03810.1 >NO01G03810.1-protein ID=NO01G03810.1-protein|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp MRLHIQGALLACYFIAERQAFIFPSLRPQSPIQCSITNPPAPSSASNTNS RRILVAPAWMTPQSSSSSSPPSSSIQEKGKKSPAAAAAAAVEVTAAAAVP AAGKEDAVPTGDVGVAKALAKPSESRAAELRQAKEQERIKNKKFINPIEI PIKAGRAARRALESLGQVEEPAPKNPDDYRLYFDKKFMYAIPAPSEKTPT VLVVGATGETGRQVVRKLILKGYRVQVLVRNLYSTTLNLLGTGVSYVKGD LADLASLRTACDGADKAVYVAQARDDGDARTVEYLGLRNLAQAFQDTRLS ETGKRVTTKRTLFKFRKPVDRDVWGVTQPLVDGAEGAWTVQDERSGRPAF VGSLPVGPGGSIALESKKLGLNLSKFGGLLMLFKAQGDAQTTFRFVIRTS AFAEQGIQYELALPLVRNRFTAFRMNFRDFVPMKDGSPYKGVLGGLGGVA ALDPSDVKQFAVMVKREPAAAAGVDEAIANPAFSLTMEGIKVFRAREQPD VVVLSSSDITPSTALKSLSEMERDPASFERVERKNYYKAQGELAMKNTGL AYCIVRISDFTSSPTEGRPLSVSKSGNNMGLISRPDTADVLINCLFNPTV CNTEIYASENPRYGDRDIQRLLNELVDLPF* back to topmRNA from alignment at chr1:1022589..1025196+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at chr1:1022589..1025196+ (Nannochloropsis oceanica) GAGTGCTTCGGACGGACGCTTTATTTTCTGGCGCTCGACCTCGAGTGCTC
CTTTCCGAGCTGCTGCACGTTTGATGGCACATTTCATCACATCGTCATGC
GTGGTGTGGCTGCAGCTCGCTCTTGCGTAATCCAAAGCAAATGCATTTTC
CTGATGTCATACCTTGCACAGAGTTGGCTGCACCAAGGACACACAAGACA
AAATGTAGTTGGCAATGTTCTCCTTCCTACTTCTGTGTCTGGCTGTGTAT
GTTACTCGCATTTCCCCTTAACTATTGATGATGCATATCCATGAGCAATA
CACGCAAGCGGGTTCTGACCATGTATACCAATCCACCATAATCACGACCG
ATCGCAAACGCAATGGCCATAGGCAAATCAACACAAGAAACGAGACGTTT
GGATCGCCGCAGTCACAAGCAAAACGCCAAGGCAGTGTTCCCCTTACTTC
GCCTCCTCCCACTTTTCACGCACGGCCGAGCAGCAGCGAGTTTCCCATCG
CATCAAGCCTCCACCCACGCAATAAGCCATGCGACTCCACATTCAAGGGG
CATTACTTGCCTGCTACTTTATAGCCGAGAGACAGGCCTTTATCTTCCCG
TCTCTTCGGCCACAAAGCCCCATCCAATGTAGCATAACCAACCCCCCTGC
CCCCTCCTCCGCCAGCAACACCAATAGCAGAAGAATATTAGTCGCCCCAG
CATGGATGACCCCCCAGTCCTCCTCATCATCCTCTCCTCCCTCCTCCTCC
ATTCAAGAAAAGGGCAAAAAGAGCCCGGCAGCTGCAGCAGCAGCAGCAGT
AGAAGTAACAGCAGCAGCAGCCGTGCCTGCCGCTGGGAAAGAGGACGCAG
TTCCCACAGGGGACGTCGGGGTAGCCAAAGCCCTCGCTAAACCTAGCGAA
TCTCGTGCAGCTGAATTACGGCAAGCCAAAGAGCAAGAACGGATCAAGAA
CAAGAAGTTTATCAACCCGATAGAGATCCCTATTAAGGCAGGGCGGGCAG
CGCGACGGGCGTTGGAAAGCTTGGGTCAAGTCGAGGAGCCTGCTCCCAAG
AACCCCGACGATTACCGCCTGTATTTTGATAAAAAGTTCATGTATGCCAT
CCCGGCACCGAGTGAGAAAACTCCCACTGTGTTGGTGGTGGGAGCGACGG
GGGAGACCGGGCGGCAGGTGGTGAGGAAATTGATTCTGAAGGGGTATCGG
GTGCAGGTTTTGGTGAGGAATTTGTACTCGACCACGCTCAATTTGTTGGG
CACGGGCGTGTCGTACGTGAAGGGGGACCTAGCGGACCTAGCTTCGTTGA
GAACGGCGTGTGATGGGGCGGATAAGGCGGTGTACGTGGCGCAGGCGAGG
GATGATGGGGATGCTCGTACGGTGGAGTACTTGGGCCTGCGCAATCTGGC
ACAGGCGTTTCAGGACACCAGATTGTCTGAGACAGGGAAGAGGGTCACGA
CAAAGAGGACATTGTTCAAGTTCCGCAAGCCCGTTGACAGGGATGTCTGG
GGCGTGACTCAGCCACTGGTCGATGGAGCGGAAGGTGCGTGGACGGTCCA
GGACGAGCGGTCGGGCCGGCCTGCCTTTGTGGGGAGTTTGCCTGTGGGTC
CCGGAGGATCCATTGCATTAGAGAGTAAGAAATTAGGGCTGAATCTCTCA
AAGTTTGGGGGTTTGTTGATGTTGTTCAAGGCCCAGGGGGATGCCCAGAC
CACTTTCCGGTTTGTGATACGCACGAGTGCATTTGCGGAACAGGGGATCC
AATATGAGTTAGCCCTCCCGCTGGTTCGAAATCGATTTACCGCTTTCAGG
ATGAATTTTAGAGACTTTGTGCCGATGAAGGACGGGAGTCCTTACAAAGG
TGTACTCGGCGGGTTGGGGGGCGTGGCGGCGCTGGACCCGAGTGACGTAA
AGCAATTCGCGGTGATGGTGAAAAGAGAGCCGGCGGCGGCGGCGGGGGTG
GACGAGGCGATTGCCAACCCTGCCTTCAGTCTGACGATGGAGGGGATTAA
GGTGTTCAGGGCGAGGGAACAGCCGGATGTAGTCGTGTTAAGTTCATCGG
ACATTACGCCATCGACGGCACTGAAGAGTTTGTCGGAAATGGAAAGGGAC
CCTGCATCGTTTGAGCGAGTTGAAAGGAAAAATTACTATAAGGCCCAGGG
AGAACTAGCGATGAAGAATACGGGGCTGGCGTATTGTATTGTAAGGATTT
CGGACTTTACCTCCAGCCCGACGGAGGGAAGGCCGTTGAGCGTCTCGAAG
AGTGGGAATAATATGGGCCTTATCTCCAGGCCGGACACGGCTGATGTTTT
GATCAATTGCTTGTTCAACCCCACGGTTTGCAATACGGAGATTTATGCGA
GTGAAAATCCGAGGTACGGAGACCGAGATATCCAAAGGTTGTTGAATGAA
TTGGTGGATTTGCCGTTTTAGATTGGAGAGGGGGGGGAAGGGAGGGAGGG
AGAAAGGAAGGAAGGGAAGGCAGGTGACAATTTATGATAGGGGAGAGTGA
GTGAAATATAACAACAGGGAAGAAGAGAAAAAAAAGGCGACCGGAAGTAA
TGCACGAAGAGGATAAAAAGAAAGAAAGAAAAAAGATGAAAAAGAAGTAG
AATCAAAA back to topCoding sequence (CDS) from alignment at chr1:1022589..1025196+ >NO01G03810.1 ID=NO01G03810.1|Name=NO01G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr1:1022589..1025196+ (Nannochloropsis oceanica) ATGCGACTCCACATTCAAGGGGCATTACTTGCCTGCTACTTTATAGCCGA GAGACAGGCCTTTATCTTCCCGTCTCTTCGGCCACAAAGCCCCATCCAAT GTAGCATAACCAACCCCCCTGCCCCCTCCTCCGCCAGCAACACCAATAGC AGAAGAATATTAGTCGCCCCAGCATGGATGACCCCCCAGTCCTCCTCATC ATCCTCTCCTCCCTCCTCCTCCATTCAAGAAAAGGGCAAAAAGAGCCCGG CAGCTGCAGCAGCAGCAGCAGTAGAAGTAACAGCAGCAGCAGCCGTGCCT GCCGCTGGGAAAGAGGACGCAGTTCCCACAGGGGACGTCGGGGTAGCCAA AGCCCTCGCTAAACCTAGCGAATCTCGTGCAGCTGAATTACGGCAAGCCA AAGAGCAAGAACGGATCAAGAACAAGAAGTTTATCAACCCGATAGAGATC CCTATTAAGGCAGGGCGGGCAGCGCGACGGGCGTTGGAAAGCTTGGGTCA AGTCGAGGAGCCTGCTCCCAAGAACCCCGACGATTACCGCCTGTATTTTG ATAAAAAGTTCATGTATGCCATCCCGGCACCGAGTGAGAAAACTCCCACT GTGTTGGTGGTGGGAGCGACGGGGGAGACCGGGCGGCAGGTGGTGAGGAA ATTGATTCTGAAGGGGTATCGGGTGCAGGTTTTGGTGAGGAATTTGTACT CGACCACGCTCAATTTGTTGGGCACGGGCGTGTCGTACGTGAAGGGGGAC CTAGCGGACCTAGCTTCGTTGAGAACGGCGTGTGATGGGGCGGATAAGGC GGTGTACGTGGCGCAGGCGAGGGATGATGGGGATGCTCGTACGGTGGAGT ACTTGGGCCTGCGCAATCTGGCACAGGCGTTTCAGGACACCAGATTGTCT GAGACAGGGAAGAGGGTCACGACAAAGAGGACATTGTTCAAGTTCCGCAA GCCCGTTGACAGGGATGTCTGGGGCGTGACTCAGCCACTGGTCGATGGAG CGGAAGGTGCGTGGACGGTCCAGGACGAGCGGTCGGGCCGGCCTGCCTTT GTGGGGAGTTTGCCTGTGGGTCCCGGAGGATCCATTGCATTAGAGAGTAA GAAATTAGGGCTGAATCTCTCAAAGTTTGGGGGTTTGTTGATGTTGTTCA AGGCCCAGGGGGATGCCCAGACCACTTTCCGGTTTGTGATACGCACGAGT GCATTTGCGGAACAGGGGATCCAATATGAGTTAGCCCTCCCGCTGGTTCG AAATCGATTTACCGCTTTCAGGATGAATTTTAGAGACTTTGTGCCGATGA AGGACGGGAGTCCTTACAAAGGTGTACTCGGCGGGTTGGGGGGCGTGGCG GCGCTGGACCCGAGTGACGTAAAGCAATTCGCGGTGATGGTGAAAAGAGA GCCGGCGGCGGCGGCGGGGGTGGACGAGGCGATTGCCAACCCTGCCTTCA GTCTGACGATGGAGGGGATTAAGGTGTTCAGGGCGAGGGAACAGCCGGAT GTAGTCGTGTTAAGTTCATCGGACATTACGCCATCGACGGCACTGAAGAG TTTGTCGGAAATGGAAAGGGACCCTGCATCGTTTGAGCGAGTTGAAAGGA AAAATTACTATAAGGCCCAGGGAGAACTAGCGATGAAGAATACGGGGCTG GCGTATTGTATTGTAAGGATTTCGGACTTTACCTCCAGCCCGACGGAGGG AAGGCCGTTGAGCGTCTCGAAGAGTGGGAATAATATGGGCCTTATCTCCA GGCCGGACACGGCTGATGTTTTGATCAATTGCTTGTTCAACCCCACGGTT TGCAATACGGAGATTTATGCGAGTGAAAATCCGAGGTACGGAGACCGAGA TATCCAAAGGTTGTTGAATGAATTGGTGGATTTGCCGTTTTAG back to top
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