NO01G03790.2, NO01G03790.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03790.2
Unique NameNO01G03790.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1510
Alignment locationchr1:1019114..1020975 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1019114..1020975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03790.2 vs.
Match: EWM29316.1 (protein of unknown function DUF292, eukaryotic, partial [Nannochloropsis gaditana])

HSP 1 Score: 312.4 bits (799), Expect = 1.900e-81
Identity = 176/248 (70.97%), Postives = 196/248 (79.03%), Query Frame = 0 
Query:   15 RMAQREVANLLAQQKDEKAAIKVEAIIREDATIEAYGILELVCDLLHERARLVASEKECPEDLKSAVVTLIWATNRADIMELHEVKKQFAKKFGKEFVERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIALKNDVEWTPLEHPCDLTEDQKAFSSMPAPTGASVGMGPASGFGHLYHTGGAGGGGEGGGGGGGGGGMSMPIARPISPPCPSPSCDFMTSTSGSNNGDGCEKDPFQPPSRQPPP 263
            ++ QR++A+LLAQQKDEKAAIKVE+IIRED+TIEAYGILELVC+LLHERARL+ASEKECP+DLKSAVVTLIW+ NRADI EL EVKKQF KKFG+EF+ERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIA  N+VEWTPLE P  L+ DQKAF+S PAPTG SV MGPASGFGHLY   G  G  EGG  GGG GG SMPIA  +S      S   +    G+   D        PP+ QPPP
Sbjct:   40 KITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFGHLYTAPGGPGRAEGGAEGGGEGGTSMPIAHAVS------SSTHLGPDPGAGKAD-------VPPAFQPPP 274
The following BLAST results are available for this feature:
BLAST of NO01G03790.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29316.11.900e-8170.97protein of unknown function DUF292, eukaryotic, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03790NO01G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03790.2NO01G03790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03790.2.cds1NO01G03790.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03790.2.cds2NO01G03790.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03790.2.cds3NO01G03790.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03790.2 ID=NO01G03790.2|Name=NO01G03790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
ACAGGAGGACCAAGCAAGCCAAGCAAACTATTCGAAGTGTTTCTCCAGTG
CCAAGCCACTTCCTCCATACACACAAGACCCCGCAAAGCCCCGCCTTCCC
CTCCCGCGCATCAGCCATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTG
ACGTGAACAAAGTAAAGCCGTATCTAAAGATGGCCGTGCAACGCATCCAG
ATCGCCACCAACAAGAAGACGGCGGCCGTCAAGTACGTAGTAGGGCGGCG
AGGGAAAGGCTGGCCGAAGCAAAAGCAGAGGCCCATCTTCATGTGCTCAT
GTCCCTCCCCTTCTTTTCTTCACACGACGACACGACCGGTAGGATGGCCC
AACGCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCGCG
ATCAAGGTGGAGGCCATTATTCGTGAGGACGCCACCATCGAAGCCTATGG
CATCTTGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGTTG
CCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTTTA
ATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAAAA
GCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAAGG
ATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTCGG
CCTCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTCAA
AAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGACAGAAG
ACCAGAAAGCCTTCTCATCGATGCCCGCCCCAACGGGCGCGTCCGTTGGC
ATGGGCCCGGCATCTGGTTTTGGCCATCTCTATCATACTGGTGGTGCTGG
GGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGATGAGCA
TGCCTATCGCCCGTCCCATCAGCCCTCCCTGTCCGTCTCCCTCTTGTGAC
TTTATGACAAGCACCAGTGGCAGCAATAATGGTGATGGTTGTGAGAAGGA
TCCCTTTCAACCTCCCTCCCGCCAACCCCCTCCGCTCCCTTCCCAAGCAA
CAGCTACTCCTAATTCTTCCGCCCCTGCTGCTCCTACCGCCCCTCCGTCC
TCTCCCCCCTTCCTCCCCGCGGCTGTGGAGGCCGGGGCCTCCGCTCCGGT
GATGACGGCCGTTGGTGTCGAGGGAGGGGGGGAGGGAGGACCTGTGTACG
ACATTCCGCTTCCTCCTACAACTGCCCCTGTGAGAGCGGAGCCCGCGCTG
GTGCTACCCCCGGCACCATCGACGTCAGGGAGTGGAGGGCCAGGGGGAGA
AGTGGATGATCTGTTGACTCGGTTTCAACGGTTGCAGCAGCGATAGAGGG
GGGGGGGGATGGAAGGAGTTTCGTATGGGGGGTGTTTGAATTGACGATAC
TGCAGAGGGGGGAAGGAGGAGGGGAGAAAATAAATAAAACAATGATATGT
TAATATGAGG
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protein sequence of NO01G03790.2

>NO01G03790.2-protein ID=NO01G03790.2-protein|Name=NO01G03790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MSLPFFSSHDDTTGRMAQREVANLLAQQKDEKAAIKVEAIIREDATIEAY
GILELVCDLLHERARLVASEKECPEDLKSAVVTLIWATNRADIMELHEVK
KQFAKKFGKEFVERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIAL
KNDVEWTPLEHPCDLTEDQKAFSSMPAPTGASVGMGPASGFGHLYHTGGA
GGGGEGGGGGGGGGGMSMPIARPISPPCPSPSCDFMTSTSGSNNGDGCEK
DPFQPPSRQPPPLPSQATATPNSSAPAAPTAPPSSPPFLPAAVEAGASAP
VMTAVGVEGGGEGGPVYDIPLPPTTAPVRAEPALVLPPAPSTSGSGGPGG
EVDDLLTRFQRLQQR*
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mRNA from alignment at chr1:1019114..1020975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03790.2 ID=NO01G03790.2|Name=NO01G03790.2|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp|location=Sequence derived from alignment at chr1:1019114..1020975- (Nannochloropsis oceanica)
ACAGGAGGACCAAGCAAGCCAAGCAAACTATTCGAAGTGTTTCTCCAGTG
CCAAGCCACTTCCTCCATACACACAAGACCCCGCAAAGCCCCGCCTTCCC
CTCCCGCGCATCAGCCATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTG
ACGTGAACAAAGTAAAGCCGTATCTAAAGATGGCCGTGCAACGCATCCAG
ATCGCCACCAACAAGAAGACGGCGGCCGTCAAGTACGTAGTAGGGCGGCG
AGGGAAAGGCTGGCCGAAGCAAAAGCAGAGGCCCATCTTCATGTGCTCAT
GTCCCTCCCCTTCTTTTCTTCACACGACGACACGACCGGTAGGATGGCCC
AACGCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCGCG
ATCAAGGTGGAGGCCATTATTCGGTACGTACCTATGCCTCTGTTGTCCTC
CCGAAATGAGCTTATGCGCCAGAACGCCCGCTGTCCCTCCCTCGTTCATC
CAATTTCACCAACCGTCCATCCCATTCTTCTTCTGTCGCATGACAAACCT
CACAAAACCACACCTAAATCAACAGTGAGGACGCCACCATCGAAGCCTAT
GGCATCTTGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGT
TGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTT
TAATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAA
AAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAA
GGATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTC
GGCCTGTGCGTCCCAAAAGGGAGGGAGGGAGAGAGAAAGGGAGAGGGAAG
GAGAGGATGGAGAGGGAGACAGATTTTTCCAAATTTTCTCGTGATTATGT
GGGTGTCCCTCCCTCCGACCCATTGGCTTCATCCGGCTTATGTCCGAAAA
GTGTTCACCCTTCTCCCTCCTTCCATTCCTTTTTCCCTCCCTCCTCTCAC
AATAGCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTC
AAAAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGACAGA
AGACCAGAAAGCCTTCTCATCGATGCCCGCCCCAACGGGCGCGTCCGTTG
GCATGGGCCCGGCATCTGGTTTTGGCCATCTCTATCATACTGGTGGTGCT
GGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGATGAG
CATGCCTATCGCCCGTCCCATCAGCCCTCCCTGTCCGTCTCCCTCTTGTG
ACTTTATGACAAGCACCAGTGGCAGCAATAATGGTGATGGTTGTGAGAAG
GATCCCTTTCAACCTCCCTCCCGCCAACCCCCTCCGCTCCCTTCCCAAGC
AACAGCTACTCCTAATTCTTCCGCCCCTGCTGCTCCTACCGCCCCTCCGT
CCTCTCCCCCCTTCCTCCCCGCGGCTGTGGAGGCCGGGGCCTCCGCTCCG
GTGATGACGGCCGTTGGTGTCGAGGGAGGGGGGGAGGGAGGACCTGTGTA
CGACATTCCGCTTCCTCCTACAACTGCCCCTGTGAGAGCGGAGCCCGCGC
TGGTGCTACCCCCGGCACCATCGACGTCAGGGAGTGGAGGGCCAGGGGGA
GAAGTGGATGATCTGTTGACTCGGTTTCAACGGTTGCAGCAGCGATAGAG
GGGGGGGGGGATGGAAGGAGTTTCGTATGGGGGGTGTTTGAATTGACGAT
ACTGCAGAGGGGGGAAGGAGGAGGGGAGAAAATAAATAAAACAATGATAT
GTTAATATGAGG
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Coding sequence (CDS) from alignment at chr1:1019114..1020975-

>NO01G03790.2 ID=NO01G03790.2|Name=NO01G03790.2|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr1:1019114..1020975- (Nannochloropsis oceanica)
ATGTCCCTCCCCTTCTTTTCTTCACACGACGACACGACCGGTAGGATGGC
CCAACGCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCG
CGATCAAGGTGGAGGCCATTATTCGTGAGGACGCCACCATCGAAGCCTAT
GGCATCTTGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGT
TGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTT
TAATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAA
AAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAA
GGATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTC
GGCCTCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTC
AAAAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGACAGA
AGACCAGAAAGCCTTCTCATCGATGCCCGCCCCAACGGGCGCGTCCGTTG
GCATGGGCCCGGCATCTGGTTTTGGCCATCTCTATCATACTGGTGGTGCT
GGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGATGAG
CATGCCTATCGCCCGTCCCATCAGCCCTCCCTGTCCGTCTCCCTCTTGTG
ACTTTATGACAAGCACCAGTGGCAGCAATAATGGTGATGGTTGTGAGAAG
GATCCCTTTCAACCTCCCTCCCGCCAACCCCCTCCGCTCCCTTCCCAAGC
AACAGCTACTCCTAATTCTTCCGCCCCTGCTGCTCCTACCGCCCCTCCGT
CCTCTCCCCCCTTCCTCCCCGCGGCTGTGGAGGCCGGGGCCTCCGCTCCG
GTGATGACGGCCGTTGGTGTCGAGGGAGGGGGGGAGGGAGGACCTGTGTA
CGACATTCCGCTTCCTCCTACAACTGCCCCTGTGAGAGCGGAGCCCGCGC
TGGTGCTACCCCCGGCACCATCGACGTCAGGGAGTGGAGGGCCAGGGGGA
GAAGTGGATGATCTGTTGACTCGGTTTCAACGGTTGCAGCAGCGATAG
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Synonyms
Publications