NO01G03790.1, NO01G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03790.1
Unique NameNO01G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr1:1019114..1020975 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1019114..1020975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03790.1 vs.
Match: EWM29316.1 (protein of unknown function DUF292, eukaryotic, partial [Nannochloropsis gaditana])

HSP 1 Score: 368.6 bits (945), Expect = 2.400e-98
Identity = 206/284 (72.54%), Postives = 230/284 (80.99%), Query Frame = 0 
Query:    3 AFIESFKPFDVNKVKPYLKMAVQRIQIATNKKTAAVKMAQREVANLLAQQKDEKAAIKVEAIIREDATIEAYGILELVCDLLHERARLVASEKECPEDLKSAVVTLIWATNRADIMELHEVKKQFAKKFGKEFVERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIALKNDVEWTPLEHPCDLTEDQKAFSSMPAPTGASVGMGPASGFGHLYHTGGAGGGGEGGGGGGGGGGMSMPIARPISPPCPSPSCDFMTSTSGSNNGDGCEKDPFQPPSRQPPP 287
            +F E+FK FDVNK+KP+LKMA+QRIQIATNKKTAAVK+ QR++A+LLAQQKDEKAAIKVE+IIRED+TIEAYGILELVC+LLHERARL+ASEKECP+DLKSAVVTLIW+ NRADI EL EVKKQF KKFG+EF+ERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIA  N+VEWTPLE P  L+ DQKAF+S PAPTG SV MGPASGFGHLY   G  G  EGG  GGG GG SMPIA  +S      S   +    G+   D        PP+ QPPP
Sbjct:    4 SFFEAFKSFDVNKLKPFLKMAIQRIQIATNKKTAAVKITQRDIASLLAQQKDEKAAIKVESIIREDSTIEAYGILELVCELLHERARLIASEKECPDDLKSAVVTLIWSANRADIPELQEVKKQFTKKFGREFIERAEKDEDRLVNERVAHKLSIRPPSAAIVEKYLREIARSNNVEWTPLEQPSQLSLDQKAFASTPAPTGVSVAMGPASGFGHLYTAPGGPGRAEGGAEGGGEGGTSMPIAHAVS------SSTHLGPDPGAGKAD-------VPPAFQPPP 274
The following BLAST results are available for this feature:
BLAST of NO01G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29316.12.400e-9872.54protein of unknown function DUF292, eukaryotic, pa... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03790NO01G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03790.1NO01G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03790.1.cds1NO01G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03790.1.cds2NO01G03790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03790.1.cds3NO01G03790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03790.1.cds4NO01G03790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03790.1 ID=NO01G03790.1|Name=NO01G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
ACAGGAGGACCAAGCAAGCCAAGCAAACTATTCGAAGTGTTTCTCCAGTG
CCAAGCCACTTCCTCCATACACACAAGACCCCGCAAAGCCCCGCCTTCCC
CTCCCGCGCATCAGCCATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTG
ACGTGAACAAAGTAAAGCCGTATCTAAAGATGGCCGTGCAACGCATCCAG
ATCGCCACCAACAAGAAGACGGCGGCCGTCAAGATGGCCCAACGCGAGGT
CGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCGCGATCAAGGTGG
AGGCCATTATTCGTGAGGACGCCACCATCGAAGCCTATGGCATCTTGGAA
TTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGTTGCCTCCGAGAA
AGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTTTAATTTGGGCCA
CCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAAAAGCAATTCGCC
AAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAAGGATGAGGACCG
GCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTCGGCCTCCCTCCG
CCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTCAAAAATGATGTT
GAATGGACTCCTCTCGAGCATCCTTGCGACCTGACAGAAGACCAGAAAGC
CTTCTCATCGATGCCCGCCCCAACGGGCGCGTCCGTTGGCATGGGCCCGG
CATCTGGTTTTGGCCATCTCTATCATACTGGTGGTGCTGGGGGAGGAGGG
GAAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGATGAGCATGCCTATCGC
CCGTCCCATCAGCCCTCCCTGTCCGTCTCCCTCTTGTGACTTTATGACAA
GCACCAGTGGCAGCAATAATGGTGATGGTTGTGAGAAGGATCCCTTTCAA
CCTCCCTCCCGCCAACCCCCTCCGCTCCCTTCCCAAGCAACAGCTACTCC
TAATTCTTCCGCCCCTGCTGCTCCTACCGCCCCTCCGTCCTCTCCCCCCT
TCCTCCCCGCGGCTGTGGAGGCCGGGGCCTCCGCTCCGGTGATGACGGCC
GTTGGTGTCGAGGGAGGGGGGGAGGGAGGACCTGTGTACGACATTCCGCT
TCCTCCTACAACTGCCCCTGTGAGAGCGGAGCCCGCGCTGGTGCTACCCC
CGGCACCATCGACGTCAGGGAGTGGAGGGCCAGGGGGAGAAGTGGATGAT
CTGTTGACTCGGTTTCAACGGTTGCAGCAGCGATAGAGGGGGGGGGGGAT
GGAAGGAGTTTCGTATGGGGGGTGTTTGAATTGACGATACTGCAGAGGGG
GGAAGGAGGAGGGGAGAAAATAAATAAAACAATGATATGTTAATATGAGG
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protein sequence of NO01G03790.1

>NO01G03790.1-protein ID=NO01G03790.1-protein|Name=NO01G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MFAFIESFKPFDVNKVKPYLKMAVQRIQIATNKKTAAVKMAQREVANLLA
QQKDEKAAIKVEAIIREDATIEAYGILELVCDLLHERARLVASEKECPED
LKSAVVTLIWATNRADIMELHEVKKQFAKKFGKEFVERAEKDEDRLVNER
VAHKLSIRPPSAAIVEKYLREIALKNDVEWTPLEHPCDLTEDQKAFSSMP
APTGASVGMGPASGFGHLYHTGGAGGGGEGGGGGGGGGGMSMPIARPISP
PCPSPSCDFMTSTSGSNNGDGCEKDPFQPPSRQPPPLPSQATATPNSSAP
AAPTAPPSSPPFLPAAVEAGASAPVMTAVGVEGGGEGGPVYDIPLPPTTA
PVRAEPALVLPPAPSTSGSGGPGGEVDDLLTRFQRLQQR*
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mRNA from alignment at chr1:1019114..1020975-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03790.1 ID=NO01G03790.1|Name=NO01G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1862bp|location=Sequence derived from alignment at chr1:1019114..1020975- (Nannochloropsis oceanica)
ACAGGAGGACCAAGCAAGCCAAGCAAACTATTCGAAGTGTTTCTCCAGTG
CCAAGCCACTTCCTCCATACACACAAGACCCCGCAAAGCCCCGCCTTCCC
CTCCCGCGCATCAGCCATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTG
ACGTGAACAAAGTAAAGCCGTATCTAAAGATGGCCGTGCAACGCATCCAG
ATCGCCACCAACAAGAAGACGGCGGCCGTCAAGTACGTAGTAGGGCGGCG
AGGGAAAGGCTGGCCGAAGCAAAAGCAGAGGCCCATCTTCATGTGCTCAT
GTCCCTCCCCTTCTTTTCTTCACACGACGACACGACCGGTAGGATGGCCC
AACGCGAGGTCGCCAATTTGCTTGCACAACAGAAAGATGAGAAAGCCGCG
ATCAAGGTGGAGGCCATTATTCGGTACGTACCTATGCCTCTGTTGTCCTC
CCGAAATGAGCTTATGCGCCAGAACGCCCGCTGTCCCTCCCTCGTTCATC
CAATTTCACCAACCGTCCATCCCATTCTTCTTCTGTCGCATGACAAACCT
CACAAAACCACACCTAAATCAACAGTGAGGACGCCACCATCGAAGCCTAT
GGCATCTTGGAATTGGTCTGCGATTTATTGCACGAACGCGCCCGCCTTGT
TGCCTCCGAGAAAGAGTGCCCGGAGGACTTGAAGTCCGCGGTTGTCACTT
TAATTTGGGCCACCAACCGAGCAGATATCATGGAGCTGCATGAGGTCAAA
AAGCAATTCGCCAAGAAGTTTGGCAAGGAATTTGTGGAGCGCGCGGAGAA
GGATGAGGACCGGCTGGTCAATGAACGCGTGGCCCATAAATTGTCGATTC
GGCCTGTGCGTCCCAAAAGGGAGGGAGGGAGAGAGAAAGGGAGAGGGAAG
GAGAGGATGGAGAGGGAGACAGATTTTTCCAAATTTTCTCGTGATTATGT
GGGTGTCCCTCCCTCCGACCCATTGGCTTCATCCGGCTTATGTCCGAAAA
GTGTTCACCCTTCTCCCTCCTTCCATTCCTTTTTCCCTCCCTCCTCTCAC
AATAGCCCTCCGCCGCCATCGTCGAGAAGTATCTTCGCGAGATCGCGCTC
AAAAATGATGTTGAATGGACTCCTCTCGAGCATCCTTGCGACCTGACAGA
AGACCAGAAAGCCTTCTCATCGATGCCCGCCCCAACGGGCGCGTCCGTTG
GCATGGGCCCGGCATCTGGTTTTGGCCATCTCTATCATACTGGTGGTGCT
GGGGGAGGAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGGATGAG
CATGCCTATCGCCCGTCCCATCAGCCCTCCCTGTCCGTCTCCCTCTTGTG
ACTTTATGACAAGCACCAGTGGCAGCAATAATGGTGATGGTTGTGAGAAG
GATCCCTTTCAACCTCCCTCCCGCCAACCCCCTCCGCTCCCTTCCCAAGC
AACAGCTACTCCTAATTCTTCCGCCCCTGCTGCTCCTACCGCCCCTCCGT
CCTCTCCCCCCTTCCTCCCCGCGGCTGTGGAGGCCGGGGCCTCCGCTCCG
GTGATGACGGCCGTTGGTGTCGAGGGAGGGGGGGAGGGAGGACCTGTGTA
CGACATTCCGCTTCCTCCTACAACTGCCCCTGTGAGAGCGGAGCCCGCGC
TGGTGCTACCCCCGGCACCATCGACGTCAGGGAGTGGAGGGCCAGGGGGA
GAAGTGGATGATCTGTTGACTCGGTTTCAACGGTTGCAGCAGCGATAGAG
GGGGGGGGGGATGGAAGGAGTTTCGTATGGGGGGTGTTTGAATTGACGAT
ACTGCAGAGGGGGGAAGGAGGAGGGGAGAAAATAAATAAAACAATGATAT
GTTAATATGAGG
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Coding sequence (CDS) from alignment at chr1:1019114..1020975-

>NO01G03790.1 ID=NO01G03790.1|Name=NO01G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr1:1019114..1020975- (Nannochloropsis oceanica)
ATGTTCGCTTTTATCGAGAGTTTCAAGCCCTTTGACGTGAACAAAGTAAA
GCCGTATCTAAAGATGGCCGTGCAACGCATCCAGATCGCCACCAACAAGA
AGACGGCGGCCGTCAAGATGGCCCAACGCGAGGTCGCCAATTTGCTTGCA
CAACAGAAAGATGAGAAAGCCGCGATCAAGGTGGAGGCCATTATTCGTGA
GGACGCCACCATCGAAGCCTATGGCATCTTGGAATTGGTCTGCGATTTAT
TGCACGAACGCGCCCGCCTTGTTGCCTCCGAGAAAGAGTGCCCGGAGGAC
TTGAAGTCCGCGGTTGTCACTTTAATTTGGGCCACCAACCGAGCAGATAT
CATGGAGCTGCATGAGGTCAAAAAGCAATTCGCCAAGAAGTTTGGCAAGG
AATTTGTGGAGCGCGCGGAGAAGGATGAGGACCGGCTGGTCAATGAACGC
GTGGCCCATAAATTGTCGATTCGGCCTCCCTCCGCCGCCATCGTCGAGAA
GTATCTTCGCGAGATCGCGCTCAAAAATGATGTTGAATGGACTCCTCTCG
AGCATCCTTGCGACCTGACAGAAGACCAGAAAGCCTTCTCATCGATGCCC
GCCCCAACGGGCGCGTCCGTTGGCATGGGCCCGGCATCTGGTTTTGGCCA
TCTCTATCATACTGGTGGTGCTGGGGGAGGAGGGGAAGGAGGAGGAGGAG
GAGGAGGAGGGGGAGGGATGAGCATGCCTATCGCCCGTCCCATCAGCCCT
CCCTGTCCGTCTCCCTCTTGTGACTTTATGACAAGCACCAGTGGCAGCAA
TAATGGTGATGGTTGTGAGAAGGATCCCTTTCAACCTCCCTCCCGCCAAC
CCCCTCCGCTCCCTTCCCAAGCAACAGCTACTCCTAATTCTTCCGCCCCT
GCTGCTCCTACCGCCCCTCCGTCCTCTCCCCCCTTCCTCCCCGCGGCTGT
GGAGGCCGGGGCCTCCGCTCCGGTGATGACGGCCGTTGGTGTCGAGGGAG
GGGGGGAGGGAGGACCTGTGTACGACATTCCGCTTCCTCCTACAACTGCC
CCTGTGAGAGCGGAGCCCGCGCTGGTGCTACCCCCGGCACCATCGACGTC
AGGGAGTGGAGGGCCAGGGGGAGAAGTGGATGATCTGTTGACTCGGTTTC
AACGGTTGCAGCAGCGATAG
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Synonyms
Publications