|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:913167..915461 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03500.1 vs.
Match: EWM29257.1 (plastidic atp adp transporter [Nannochloropsis gaditana]) HSP 1 Score: 991.5 bits (2562), Expect = 1.100e-285 Identity = 512/579 (88.43%), Postives = 540/579 (93.26%), Query Frame = 0
Query: 1 MSRIILTACLLAGCVQGFQSSGFRPSFALSRKSYALIAPSKALPDSLRQRHGGASATGLPRSLPRVSSTAASIVENSGAVPEKTTWWQRFKAQLPTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAALLITIVYSKLCNAMPMAKVFYTLITPFLAFFASFAFLIYPNRNILHPNAAADHLQKILPASFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKGLPDGVDKWGVSLKLLMGAVVALGTVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATNMTLKESAQYLFKSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGRTIFQKYGWGVAALITPVMLLATGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAAVDVIGNPLGKSGGSFIQQILILGLGSLSASTPYLAGIIFLIVGAWINAANSLSKQFKEKMEANPNA 580
M+RI L C+LAG VQGFQSS FRP++AL+RKS AL+APS AL + R+RH LPRSLPR+ S A+ +VE + +K + WQRFKAQ+PTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAAL+ITIVYSKLCN +PM+KVFYTLITPFLAFFASFAFLIYPNRN LHPNAAAD+LQ +LP+SFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRK LPDGVDKWGVSLKLLMGAVV+LG VMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSAT+M+LKESAQYLF SKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGR IFQKYGWGVAALITP+MLL+TGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAA+DVIGNPLGKSGGSFIQQILIL LGSLSASTPYLAGIIFLIVGAWI AA SLSKQFKEKM NP+A
Sbjct: 1 MTRIFLALCILAGSVQGFQSSVFRPNYALARKSCALVAPSTALTEGSRRRHAA-----LPRSLPRIFSAASPVVEGGASPEKKASMWQRFKAQMPTKVERKKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPAALMITIVYSKLCNVLPMSKVFYTLITPFLAFFASFAFLIYPNRNFLHPNAAADYLQTVLPSSFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANEVTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKQLPDGVDKWGVSLKLLMGAVVSLGAVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATSMSLKESAQYLFNSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSAFMGNFSTATGCVTLIMMLLGRGIFQKYGWGVAALITPIMLLSTGVAFFSLIIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYIPLDAEQKTKGKAAIDVIGNPLGKSGGSFIQQILILILGSLSASTPYLAGIIFLIVGAWIKAAASLSKQFKEKMAQNPDA 574
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCT ATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGT CATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTC CTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGA CCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGC AAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTA CACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGT CCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCC GCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCAT GGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCT CCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCC GCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGAT CTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGC TGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAG GTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGG GGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTA GCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTG AAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGC GTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCG CGGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTG AAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGC TACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGT GGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCT TTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGAT GCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGT TAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTG ATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGAC GCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGA AGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATT CCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCAT CGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGA TCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATT ATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAA GCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA back to topprotein sequence of NO01G03500.1 >NO01G03500.1-protein ID=NO01G03500.1-protein|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp MSRIILTACLLAGCVQGFQSSGFRPSFALSRKSYALIAPSKALPDSLRQR HGGASATGLPRSLPRVSSTAASIVENSGAVPEKTTWWQRFKAQLPTKVER KKILPLTLMFFCMLFNYTILRDTKDVLVVTAPQSGAEVIPFLKTYVNLPA ALLITIVYSKLCNAMPMAKVFYTLITPFLAFFASFAFLIYPNRNILHPNA AADHLQKILPASFGALISIFRNWTYALFYTMAELWGSVVVSLLFWGFANE VTTVPEAKKYYPLFGLGANVALIFSGQYVRFVSSIRKGLPDGVDKWGVSL KLLMGAVVALGTVMVGAYTHMQRNVLTDPECYSAEKQKKSSKKSATNMTL KESAQYLFKSKYIRDLATLVIAYGMSINIVEVTWKGKLKEAFPDPNAYSA FMGNFSTATGCVTLIMMLLGRTIFQKYGWGVAALITPVMLLATGVAFFSL IIFNGFFSPVTAALGMTPLMLAVIIGAAQNVLSKSSKYSLFDPCKEMAYI PLDAEQKTKGKAAVDVIGNPLGKSGGSFIQQILILGLGSLSASTPYLAGI IFLIVGAWINAANSLSKQFKEKMEANPNAEH* back to topmRNA from alignment at chr1:913167..915461+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2295bp|location=Sequence derived from alignment at chr1:913167..915461+ (Nannochloropsis oceanica) ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG
CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGTAAGGGC
ATCCTGGAAGACTGTGATGTTAGGAAAGGATAGGTGGGCGCAGGACCACG
CAAGAGCTAGAACAAACTTGCCCCTCGGCCTTCGTCATGTTGAAGTGCTT
GCGGGCGGCGGAGGAGAGTGAGCTTTCGATAGCATAAAGACCAGGGCACA
CTGCGCGTAGTCACTCTAAGATGTGCACCAGGGGAATGCAAAGAACTTAA
TATGTATCGAGTGGCATGCGGATATGTGGGCGTAGACCGAGTGCTCAAAA
CAGCATCGAGCATTCAGAGCAGCGCTGGGCCCTCCGCGCATTACGTCTCT
GTCTACTTGGAGTAACCCACATATACCGTCTCAAACCAGACCTTCTTTCA
CTGCACAACCTTTTTCGACTAGATAAGGATATGAATAAGAACGGCATAAC
ACTTTATCATCATTCCAGTCCTACAGTATCAGACTACATCACCTCCCCCT
CCTGACCCCTCTGCATGTCCTCCCATCTCACTAACCCCAACCTCGCTCCT
CCCCTCATGTAACTCCCCCCCCAAAAAAACGACAACGACAGGAAAAGCTA
TGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGTC
ATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTCC
TCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGAC
CACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGCA
AGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTAC
ACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGTC
CGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCCG
CGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCATG
GCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCTC
CTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCCG
CCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGATC
TCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGCT
GTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAGG
TGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGGG
GCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTAG
CATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTGA
AGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGCG
TACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCGC
GGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTGA
AGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGCT
ACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGTG
GAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCTT
TCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGATG
CTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGTT
AATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTGA
TTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGACG
CCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGAA
GTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATTC
CCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCATC
GGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGAT
CTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATTA
TCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAAG
CAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA back to topCoding sequence (CDS) from alignment at chr1:913167..915461+ >NO01G03500.1 ID=NO01G03500.1|Name=NO01G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at chr1:913167..915461+ (Nannochloropsis oceanica) ATGTCGAGAATCATTCTCACTGCCTGCCTTTTGGCGGGGTGCGTCCAGGG CTTCCAGTCCTCGGGCTTCCGACCCAGCTTCGCTCTTTCCAGGAAAAGCT ATGCACTCATTGCACCTTCTAAGGCCTTGCCCGACAGTCTTCGTCAACGT CATGGTGGTGCCAGTGCGACCGGCCTTCCGCGCTCCTTGCCCCGCGTTTC CTCCACCGCCGCCTCCATCGTCGAGAACTCCGGCGCGGTCCCCGAGAAGA CCACGTGGTGGCAACGCTTCAAGGCCCAGCTCCCCACCAAGGTGGAACGC AAGAAGATTTTACCCTTGACGCTCATGTTCTTCTGCATGTTGTTTAACTA CACCATCCTGCGTGACACTAAGGACGTGCTCGTGGTGACTGCCCCTCAGT CCGGCGCGGAGGTTATTCCCTTCCTCAAGACGTACGTCAATCTCCCGGCC GCGCTCTTGATCACCATCGTGTATTCCAAGCTTTGCAATGCCATGCCCAT GGCCAAGGTCTTTTACACGCTCATCACCCCGTTCCTGGCGTTTTTTGCCT CCTTCGCCTTCCTCATCTACCCCAACCGGAATATCCTCCACCCTAACGCC GCCGCGGATCACTTGCAGAAGATCCTGCCTGCATCATTCGGTGCCTTGAT CTCGATCTTCCGTAATTGGACATACGCCTTGTTCTACACGATGGCTGAGC TGTGGGGGTCTGTGGTGGTGTCTCTGTTGTTTTGGGGGTTCGCGAATGAG GTGACCACCGTGCCGGAGGCGAAGAAGTACTATCCTTTGTTTGGGTTGGG GGCGAACGTGGCGCTGATTTTCTCGGGGCAGTACGTGCGTTTCGTGTCTA GCATTAGGAAGGGGCTGCCGGATGGCGTGGATAAATGGGGTGTGTCTCTG AAGCTGCTCATGGGCGCGGTGGTGGCTCTTGGAACGGTCATGGTCGGGGC GTACACGCACATGCAACGCAATGTCCTGACGGACCCCGAGTGCTACAGCG CGGAAAAGCAAAAGAAGAGCAGCAAGAAGAGTGCGACGAACATGACGTTG AAGGAGTCGGCGCAGTATCTGTTCAAGAGCAAGTACATCCGGGACTTGGC TACCTTGGTCATTGCCTACGGGATGTCCATCAACATTGTGGAGGTCACGT GGAAGGGCAAACTCAAGGAAGCCTTCCCTGACCCCAACGCTTACTCTGCT TTCATGGGCAACTTCTCAACAGCCACGGGGTGCGTTACGCTGATCATGAT GCTCTTAGGCCGAACCATCTTCCAGAAGTACGGGTGGGGTGTCGCGGCGT TAATCACCCCTGTCATGCTCCTGGCGACGGGGGTGGCCTTTTTCTCCTTG ATTATTTTCAACGGATTTTTTTCCCCGGTAACGGCAGCGTTGGGAATGAC GCCGTTGATGCTGGCGGTCATTATTGGGGCCGCGCAGAATGTTTTGTCGA AGTCGAGCAAGTACTCTCTGTTTGACCCGTGCAAAGAGATGGCGTACATT CCCTTGGATGCCGAGCAGAAGACTAAGGGCAAGGCCGCCGTGGACGTCAT CGGGAACCCCCTGGGCAAGTCAGGAGGGTCGTTCATCCAGCAGATTTTGA TCTTGGGGTTGGGGAGCTTGTCGGCGTCGACGCCCTACCTGGCCGGCATT ATCTTCTTGATTGTGGGGGCGTGGATCAATGCGGCCAATTCGCTGTCGAA GCAATTTAAGGAGAAGATGGAGGCCAATCCGAATGCGGAGCATTAA back to top
|