NO01G03470.1, NO01G03470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03470.1
Unique NameNO01G03470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2595
Alignment locationchr1:902936..906317 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:902936..906317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03470.1 vs.
Match: EWM29286.1 (protein of unknown function DUF1084 [Nannochloropsis gaditana])

HSP 1 Score: 429.5 bits (1103), Expect = 1.100e-116
Identity = 241/399 (60.40%), Postives = 293/399 (73.43%), Query Frame = 0 
Query:    1 MRERLLLPDAGLFLGAAGLCLLEIVRSKEDVDAATSSAGTEMRRRIHLLLLVANVARCICLLAETLLFAEYSCPSSWTCALVRTVPDLFFLTTYGLLILFWAQLSHTATGAPFPRLRPAFLISNGLLYVGFLLIVIMGGSRVLSGGQVLQALFVLLGVSYILWTLIWFKYAFRFSKMALPYVVRRRLIALCVLCGLAFFVHVAYYLGVASGLLSTWVAAAGYPPQINADVFDALLYPLWELLPSIVILAVLHKRKSGSGMASHHLSSAYPYLDSVPYTKIGSGQPGNGQG------GTGGGAGNVYDRASHSAALASAFYKLNGSSDGRGGGGRGFGAGRKGGRQQQ--QQHPWMNVVVKEGRDAQGGKGVLGLMGIYTPIEAATTPSTSSESTASAYQ 392
            MRE LLLPDA LFLG AGLC LE VRSKED D AT+SAG EMRRRI LLLLVAN+ RC+CL+ ET LF  ++CPS WTCA+VR VPDL FLTTY LL+LFWAQL  TA GAP PRL   F + NG LY GFLLIV M    VLS G+ LQ+ F+LLG+SY++  L   K+A +FS+MALPY++RRR++AL +LCG  F VH+ YYL V +GLL++W+A +GYPP+  A +FDA+LYPL ELLPS+ ILAVL++R+   G     L++AYPYL + PYTKIGSG   +G G      G GGG        S SAALASAFY+ NG   G GGG R   +GR+   + +  Q+H WMN+VVKEG++A+GG G++GLMGIYTP EA TTPS SSESTASAYQ
Sbjct:   67 MREWLLLPDAALFLGVAGLCFLERVRSKEDSDMATTSAGMEMRRRIQLLLLVANLTRCVCLIVETALFEAHNCPSLWTCAVVRCVPDLLFLTTYSLLLLFWAQLGRTARGAPCPRLNLMFSLGNGTLYTGFLLIVAMAAGDVLSHGEALQSFFMLLGLSYLVSFLFVLKFAHQFSRMALPYLLRRRVLALSLLCGTVFLVHMIYYLSVGTGLLASWLARSGYPPRPEAYIFDAILYPLQELLPSLAILAVLNRRR---GQLPTPLAAAYPYLGAGPYTKIGSGDHAHGSGLGPGSNGLGGG--------SQSAALASAFYRHNGPRKGDGGGQR---SGRQTTHEDRHHQKHFWMNMVVKEGQEARGGSGMMGLMGIYTPHEATTTPSISSESTASAYQ 451
The following BLAST results are available for this feature:
BLAST of NO01G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29286.11.100e-11660.40protein of unknown function DUF1084 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03470NO01G03470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03470.1NO01G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03470.1.cds1NO01G03470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03470.1.cds2NO01G03470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03470.1 ID=NO01G03470.1|Name=NO01G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp
ACCAATCATATGCATTTTTATGTGGTTGTGCCTCCTCTGTTCTCTTCTTA
CGTGTTCAACTTCCGTTTGGGCGATGTCGTGGCTGCCCCACTACTGCAAT
GGCCTTCTACACACATTTTTCCCTCTCCTCGACTAATTTGTCTTTCTTGG
TCACATCTTATATGCTCGTTGAAATCCTTTTGTGTCATCATCTGTGCCAG
GGGTTTCTCGAGCAGAGTAAGCCAGTCTTGCCACACGCCCTCCAGCAGCC
TCGCTAGAAGCTCCTCGCGCTGGACTGAGATCGTCTCTTCATCCACTTTT
GTTTCAGTTGATGTGCTGCAGCTGTTGTTCCCCCCGAGTGGCTTGCGTGC
CTGACGATTTGGATGACCCCCATGGCCCAAATTATCCGCCTGGCCGCCAT
TGCCGTGACTGTGTGTATGTATGTATGTATGTACGTGAGAATCGTGGCAC
TACATGAGTGCCAAATCGCTTACACAACACTATCACTAATTTTTACCTCG
CAAGTATCTCCACTTTATCTTCAAATTTAGATGGAGGAGGCGGAGGGTAA
AAAGGAGGAGGAGGGATTGTTTGGCCAACCACTCGTAGATGGACAAATGC
AGAACACCACTCCCTGATGAAATTAGCCTCCTTCTCCAAGGCTTTGCGCT
CCGTCTCCGCCTGCTGCGCGCGATGCATGGCCCAGAACTGAGCCTCAGGG
TCATCATTGCTATCGTTGTTATTGTAAGTCGGTAGTAAGATCTCAGCTTC
CGAAGGTGTAGTCGGTCTTGGAATGGGTGCGGAGGCAGCGGCATCGTCAT
AAAGAGACTCCTCGTCCTTGCGCAGCTCTCTCATTATCAAGGCCTCGGTT
TCTCGGTCCATAGCATCCCAGGCATTTTCCTCCTCCTCTTCCTTGTCTTC
CTTGTCCTCGTCCTTGTCCTGCGATAGCCATCTATCTTGACAGCCAGTGA
AGCGTTTAGCGGAGTATTTTTGGAGGGGGGGTTGAGTGTCGCATCGTCCT
GCAGGAGGTGACATGAAGGCCGGCTCCTGGCTTCTGCCGTCATTCTTCCA
ATCCCTCCCGTCGTCCATTTTGCGCTTGTGTGGATAAATTTCACACAGAT
ATCCACTGGAGCTCAGCTCCCAAGCAAACTAGCAGAGCCAAGGCCCGCCC
GTCATCGTTCCAAATTCTGCTGCGGTCCTTGAACGCGTCCACGTCCCACC
CATCGACGAAGAACTCCAATACCAAGCCATCCAGACAAGCGCACGCGTCG
ACCATAAGAGAAATAACCTAAGTGCTGTGCTAAGCTGAAGGGGCGCACCA
ACACATAAATAATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTT
CTCGGTGCTGCTGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGA
TGTCGATGCGGCCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCC
ACCTCTTGCTCCTCGTGGCTAATGTGGCAAGATGCATCTGCCTCCTGGCG
GAAACACTGCTGTTCGCGGAATACAGCTGCCCTAGCTCGTGGACCTGTGC
TCTGGTCCGCACAGTTCCTGATCTCTTCTTCCTTACCACCTACGGCTTGC
TCATCCTTTTTTGGGCCCAGCTCAGTCACACCGCCACAGGAGCCCCTTTC
CCTCGGCTAAGACCTGCCTTTCTGATTAGTAATGGACTGTTGTATGTAGG
TTTTCTGCTGATTGTGATCATGGGGGGGAGTCGAGTGTTGAGCGGTGGGC
AAGTGCTGCAGGCACTGTTTGTTCTGTTGGGAGTGTCGTATATACTGTGG
ACCTTGATTTGGTTCAAGTACGCCTTTAGATTTTCCAAGATGGCCCTGCC
TTATGTGGTGCGACGACGGTTGATTGCATTGTGCGTCTTGTGTGGGCTGG
CGTTTTTCGTGCACGTGGCATATTATCTGGGAGTGGCGTCGGGGTTGTTG
TCCACCTGGGTAGCTGCCGCTGGTTACCCACCTCAAATAAACGCGGATGT
CTTCGATGCCCTTCTCTACCCTCTCTGGGAGCTTCTACCCTCCATCGTCA
TTTTAGCGGTGCTGCACAAGCGTAAGTCCGGCAGTGGCATGGCGTCACAT
CATCTCTCCTCTGCCTACCCTTATTTAGACAGTGTACCCTACACTAAAAT
TGGGAGCGGGCAGCCGGGAAACGGCCAAGGAGGCACAGGAGGTGGTGCTG
GTAATGTGTATGACAGGGCCAGCCACTCTGCTGCCCTGGCCAGTGCATTT
TATAAGTTGAATGGGAGCAGTGATGGAAGAGGAGGAGGAGGGAGGGGATT
TGGGGCGGGAAGAAAGGGAGGAAGGCAGCAGCAACAGCAGCATCCGTGGA
TGAATGTGGTGGTGAAGGAGGGGAGGGATGCACAGGGAGGAAAGGGGGTA
TTGGGATTGATGGGGATTTATACGCCAATCGAAGCGGCGACCACGCCATC
GACGAGCAGTGAGAGCACGGCCTCAGCATACCAAGGTGCGATCTAAATCA
GTGTAGTTCGATACGTCATGAAAGAGATAAGGTGTACAAATTTCTGTTTA
TGTGTTGACAGGGAAAGAAATGAACGAAAAAATCAATGTAAAAGA
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protein sequence of NO01G03470.1

>NO01G03470.1-protein ID=NO01G03470.1-protein|Name=NO01G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MRERLLLPDAGLFLGAAGLCLLEIVRSKEDVDAATSSAGTEMRRRIHLLL
LVANVARCICLLAETLLFAEYSCPSSWTCALVRTVPDLFFLTTYGLLILF
WAQLSHTATGAPFPRLRPAFLISNGLLYVGFLLIVIMGGSRVLSGGQVLQ
ALFVLLGVSYILWTLIWFKYAFRFSKMALPYVVRRRLIALCVLCGLAFFV
HVAYYLGVASGLLSTWVAAAGYPPQINADVFDALLYPLWELLPSIVILAV
LHKRKSGSGMASHHLSSAYPYLDSVPYTKIGSGQPGNGQGGTGGGAGNVY
DRASHSAALASAFYKLNGSSDGRGGGGRGFGAGRKGGRQQQQQHPWMNVV
VKEGRDAQGGKGVLGLMGIYTPIEAATTPSTSSESTASAYQGAI*
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mRNA from alignment at chr1:902936..906317+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03470.1 ID=NO01G03470.1|Name=NO01G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=3382bp|location=Sequence derived from alignment at chr1:902936..906317+ (Nannochloropsis oceanica)
ACCAATCATATGCATTTTTATGTGGTTGTGCCTCCTCTGTTCTCTTCTTA
CGTGTTCAACTTCCGTTTGGGCGATGTCGTGGCTGCCCCACTACTGCAAT
GGCCTTCTACACACATTTTTCCCTCTCCTCGACTAATTTGTCTTTCTTGG
TCACATCTTATATGCTCGTTGAAATCCTTTTGTGTCATCATCTGTGCCAG
GGGTTTCTCGAGCAGAGTAAGCCAGTCTTGCCACACGCCCTCCAGCAGCC
TCGCTAGAAGCTCCTCGCGCTGGACTGAGATCGTCTCTTCATCCACTTTT
GTTTCAGTTGATGTGCTGCAGCTGTTGTTCCCCCCGAGTGGCTTGCGTGC
CTGACGATTTGGATGACCCCCATGGCCCAAATTATCCGCCTGGCCGCCAT
TGCCGTGACTGTGTGTATGTATGTATGTATGTACGTGAGAATCGTGGCAC
TACATGAGTGCCAAATCGCTTACACAACACTATCACTAATTTTTACCTCG
CAAGTATCTCCACTTTATCTTCAAATTTAGATGGAGGAGGCGGAGGGTAA
AAAGGAGGAGGAGGGATTGTTTGGCCAACCACTCGTAGATGGACAAATGC
AGAACACCACTCCCTGATGAAATTAGCCTCCTTCTCCAAGGCTTTGCGCT
CCGTCTCCGCCTGCTGCGCGCGATGCATGGCCCAGAACTGAGCCTCAGGG
TCATCATTGCTATCGTTGTTATTGTAAGTCGGTAGTAAGATCTCAGCTTC
CGAAGGTGTAGTCGGTCTTGGAATGGGTGCGGAGGCAGCGGCATCGTCAT
AAAGAGACTCCTCGTCCTTGCGCAGCTCTCTCATTATCAAGGCCTCGGTT
TCTCGGTCCATAGCATCCCAGGCATTTTCCTCCTCCTCTTCCTTGTCTTC
CTTGTCCTCGTCCTTGTCCTGCGATAGCCATCTATCTTGACAGCCAGTGA
AGCGTTTAGCGGAGTATTTTTGGAGGGGGGGTTGAGTGTCGCATCGTCCT
GCAGGAGGTGACATGAAGGCCGGCTCCTGGCTTCTGCCGTCATTCTTCCA
ATCCCTCCCGTCGTCCATTTTGCGCTTGTGTGGATAAATTTCACACAGAT
ATCCACTGGAGGTATGGGGGGGTGGGGATGGGGTGGGGAGGCTGAGGAAG
GAATTGTCAGGAGGCAACGGCTCTCGCCGCCTCGTGTCTGTGCATTGGTA
TAAACCACAATTACACATATGTGTTGACACCGAACATCCTCAATATGCTT
GCATTGACAAGCTTTCGCTCACTTCTATCTCCATTCCATTCAGCTCAGCT
CCCAAGCAAACTAGCAGAGCCAAGGCCCGCCCGTCATCGTTCCAAATTCT
GCTGCGGTCCTTGAACGCGTCCACGTCCCACCCATCGACGAAGAACTCCA
ATACCAAGCCATCCAGACAAGCGCACGCGTCGACCATAAGAGAAATAACC
TAAGTGCTGTGCTAAGCTGAAGGGTAGGTAGGTGAGGTGCTGGCTGGGAG
GAGGGAGGAAAAGACAGGTTGGGCTGCTGGAGAGTTGGAGGGCCGTAAGG
ATGCGGGTCGTCTGAAGCAGGGAAGGGAGAGGGAGCGAAAACGAGGAATC
GCGAGTTAGGACTATAACACGGCCAGGGTCGTCTCTGCATATAGAGGGTG
GGAAAGCTCACCGCCTCGGCGGCACCATCAGACCAGGCATCATCGATAAA
CTTATCAACAAAACCTACTCCCGCCCTATAACCACACAGGGCGCACCAAC
ACATAAATAATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTTCT
CGGTGCTGCTGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGATG
TCGATGCGGCCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCCAC
CTCTTGCTCCTCGTGGCTAATGTGGCAAGGTAAGGCGGAAAAAAGGCGAG
GATGCGCAGGGTTGAAGGGATTGTGGAAAGTGCAGACGTGTCGTCGAAGC
TGCTGGAGAGCGGTGGGAGCAGCGTTGTATATGTCCTTGTAAAACAGAGT
GATGCCTCCTGAGTGGTGTTTGGGGCTTTGGCTTGCTTGTGTTTGTGTGT
GCTCTATAATGCCCTCGTTCTTATTGTAATTCCGTCACGTTGAAATCATC
ATGGCTGATCTGGAATGTCGCGCAATTTGCCCTGCTTCTTTCGTGGCTTT
TGAACATGCTCACCTACCTCCCCCTCCCTTCCCCCCCGCGACCACCCACT
CCCCTCACCCCCAACCAGATGCATCTGCCTCCTGGCGGAAACACTGCTGT
TCGCGGAATACAGCTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCACA
GTTCCTGATCTCTTCTTCCTTACCACCTACGGCTTGCTCATCCTTTTTTG
GGCCCAGCTCAGTCACACCGCCACAGGAGCCCCTTTCCCTCGGCTAAGAC
CTGCCTTTCTGATTAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGATT
GTGATCATGGGGGGGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAGGC
ACTGTTTGTTCTGTTGGGAGTGTCGTATATACTGTGGACCTTGATTTGGT
TCAAGTACGCCTTTAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGCGA
CGACGGTTGATTGCATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTGCA
CGTGGCATATTATCTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGTAG
CTGCCGCTGGTTACCCACCTCAAATAAACGCGGATGTCTTCGATGCCCTT
CTCTACCCTCTCTGGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTGCT
GCACAAGCGTAAGTCCGGCAGTGGCATGGCGTCACATCATCTCTCCTCTG
CCTACCCTTATTTAGACAGTGTACCCTACACTAAAATTGGGAGCGGGCAG
CCGGGAAACGGCCAAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTATGA
CAGGGCCAGCCACTCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAATG
GGAGCAGTGATGGAAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAAGA
AAGGGAGGAAGGCAGCAGCAACAGCAGCATCCGTGGATGAATGTGGTGGT
GAAGGAGGGGAGGGATGCACAGGGAGGAAAGGGGGTATTGGGATTGATGG
GGATTTATACGCCAATCGAAGCGGCGACCACGCCATCGACGAGCAGTGAG
AGCACGGCCTCAGCATACCAAGGTGCGATCTAAATCAGTGTAGTTCGATA
CGTCATGAAAGAGATAAGGTGTACAAATTTCTGTTTATGTGTTGACAGGG
AAAGAAATGAACGAAAAAATCAATGTAAAAGA
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Coding sequence (CDS) from alignment at chr1:902936..906317+

>NO01G03470.1 ID=NO01G03470.1|Name=NO01G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=1185bp|location=Sequence derived from alignment at chr1:902936..906317+ (Nannochloropsis oceanica)
ATGAGAGAAAGGCTACTCCTACCAGACGCAGGCCTTTTTCTCGGTGCTGC
TGGTCTGTGTCTTTTAGAGATCGTGCGGTCAAAGGAGGATGTCGATGCGG
CCACTTCGAGTGCGGGGACTGAGATGAGACGACGGATCCACCTCTTGCTC
CTCGTGGCTAATGTGGCAAGATGCATCTGCCTCCTGGCGGAAACACTGCT
GTTCGCGGAATACAGCTGCCCTAGCTCGTGGACCTGTGCTCTGGTCCGCA
CAGTTCCTGATCTCTTCTTCCTTACCACCTACGGCTTGCTCATCCTTTTT
TGGGCCCAGCTCAGTCACACCGCCACAGGAGCCCCTTTCCCTCGGCTAAG
ACCTGCCTTTCTGATTAGTAATGGACTGTTGTATGTAGGTTTTCTGCTGA
TTGTGATCATGGGGGGGAGTCGAGTGTTGAGCGGTGGGCAAGTGCTGCAG
GCACTGTTTGTTCTGTTGGGAGTGTCGTATATACTGTGGACCTTGATTTG
GTTCAAGTACGCCTTTAGATTTTCCAAGATGGCCCTGCCTTATGTGGTGC
GACGACGGTTGATTGCATTGTGCGTCTTGTGTGGGCTGGCGTTTTTCGTG
CACGTGGCATATTATCTGGGAGTGGCGTCGGGGTTGTTGTCCACCTGGGT
AGCTGCCGCTGGTTACCCACCTCAAATAAACGCGGATGTCTTCGATGCCC
TTCTCTACCCTCTCTGGGAGCTTCTACCCTCCATCGTCATTTTAGCGGTG
CTGCACAAGCGTAAGTCCGGCAGTGGCATGGCGTCACATCATCTCTCCTC
TGCCTACCCTTATTTAGACAGTGTACCCTACACTAAAATTGGGAGCGGGC
AGCCGGGAAACGGCCAAGGAGGCACAGGAGGTGGTGCTGGTAATGTGTAT
GACAGGGCCAGCCACTCTGCTGCCCTGGCCAGTGCATTTTATAAGTTGAA
TGGGAGCAGTGATGGAAGAGGAGGAGGAGGGAGGGGATTTGGGGCGGGAA
GAAAGGGAGGAAGGCAGCAGCAACAGCAGCATCCGTGGATGAATGTGGTG
GTGAAGGAGGGGAGGGATGCACAGGGAGGAAAGGGGGTATTGGGATTGAT
GGGGATTTATACGCCAATCGAAGCGGCGACCACGCCATCGACGAGCAGTG
AGAGCACGGCCTCAGCATACCAAGGTGCGATCTAA
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Synonyms
Publications