NO01G03200.1, NO01G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03200.1
Unique NameNO01G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1578
Alignment locationchr1:842235..844030 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:842235..844030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03200.1 vs.
Match: EWM29272.1 (flagellar associated protein [Nannochloropsis gaditana])

HSP 1 Score: 339.7 bits (870), Expect = 1.500e-89
Identity = 220/452 (48.67%), Postives = 276/452 (61.06%), Query Frame = 0 
Query:   42 IKALAEMYGRIFKDKDALVRMLMADAKASEQEMQAAYEAHVRQRNSLLAFHRAHTTTLEGGFTRDLEAMKNEFQTEAALLAKQHAEEQSGLSQLLQSIEAYEKGKQQERQELQANVREILKRQGQEQIVKLRQNLTSQIDALLQHLQDKAPAFTSAATGMTGTVTTATGTTGAIETEAKAMAIKDQSLTTLIEAKVRKIDQELQRWKEWRVNMTTSGKEHSDRNQALINEKRALLDQHRKLKLHMNKHRQNQQKTLKALDEDANGAKEDLSAQIELGLRVLNLAELAYKKELEQKGALSRLQGSLVEGTLFHPPGATTNSISNTNNSGEGVAASTENPLNSFCRRYNQSLLGKVALHERRDTLLEENRMLQLAIQQYLDGVTVNDGILNGSNPLLVVKPKTKTPPRPPRRHDGSSNGSSSSSSSHPRKGHHPCVIEGNHMLQTGRLNTAPFF 494
            I++LA  YG+  ++KD L+ +L  DA  S++ +  A EAH +QR++L+ FHRAH  TL+  F RDL+ ++ EFQ E   L KQH EE+S L QLL  +E +E+ K++E QEL A VR+ LKRQG+EQ+ KLR +LTSQID+L+Q L D+   F       T    +   T+GA+    KA+A KDQSLT+ IE+KVRKIDQELQRWKEWRV MTTSGKEHS+RNQ+L NEKRAL DQ+RKLK HMNK RQ Q         DA              L+VLN    ++         L RL G                 + N  N        +E PL++F RRYN SLL K+AL ERRD L EENR LQ  +QQYLDGV+++D  L G+NPLLVV+PK  TPPR              S+   P   + P VIEGNHMLQTGRL TAPFF
Sbjct:    8 IRSLAIRYGKAVEEKDKLLSILETDATDSQENLCLAQEAHSKQRDTLIEFHRAHVDTLQKAFDRDLQELEEEFQEEMLSLEKQHEEEKSELRQLLVGMETFEQTKEREGQELHARVRDNLKRQGEEQLAKLRHSLTSQIDSLVQQLNDEK-MFGFTENNDTQNSASGFSTSGAV---GKALAAKDQSLTSQIESKVRKIDQELQRWKEWRVKMTTSGKEHSERNQSLFNEKRALSDQYRKLKSHMNKFRQEQY--------DA--------------LQVLNKVAASF---------LERLDGQ----------------VENEENE-----KGSEEPLSAFWRRYNHSLLEKIALLERRDALDEENRALQATLQQYLDGVSISDETLRGANPLLVVQPKAMTPPR--------------STKPSPWSQNPPIVIEGNHMLQTGRLGTAPFF 389
The following BLAST results are available for this feature:
BLAST of NO01G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29272.11.500e-8948.67flagellar associated protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03200NO01G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03200.1NO01G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03200.1.cds1NO01G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03200.1.cds2NO01G03200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03200.1.cds3NO01G03200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03200.1 ID=NO01G03200.1|Name=NO01G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
ATACAACACTGGTGAATCACATAGCTATGGACGGGGAGCAAGATGTGGGG
TCCCTGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTATCAGCTAAATG
GGCCGCCCTTCTGCGCTTGATCACCACCGACGCTGCTACCAAAGATGGCA
TTAAAGCCTTGGCCGAGATGTATGGACGTATATTTAAGGACAAGGATGCT
CTGGTGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAGCAGGAAATGCA
GGCCGCCTACGAGGCGCACGTCCGGCAACGTAATTCTTTGCTCGCATTCC
ACCGTGCGCACACAACTACACTTGAGGGAGGTTTCACCCGCGACCTCGAG
GCCATGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTAGCAAAACAACA
TGCAGAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATCCATCGAGGCCT
ACGAAAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAGCCAACGTGCGG
GAAATTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAGCTCCGCCAAAA
TCTTACGTCGCAAATCGACGCTTTACTTCAACACTTGCAGGACAAGGCAC
CGGCCTTTACTTCTGCAGCCACGGGAATGACAGGAACGGTGACAACGGCG
ACAGGCACCACTGGCGCCATTGAGACGGAAGCCAAGGCTATGGCGATCAA
GGATCAATCACTGACGACTCTTATCGAGGCGAAAGTACGAAAGATCGACC
AGGAGCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGACGACCAGCGGG
AAGGAGCACAGCGATCGGAATCAGGCTTTGATAAACGAAAAGCGGGCCCT
ACTTGACCAGCATCGAAAACTTAAGTTGCACATGAACAAACACCGCCAGA
ATCAGCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAAATGGAGCCAAG
GAAGATTTGAGCGCGCAGATTGAGCTTGGCCTACGGGTACTGAACCTGGC
AGAATTAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCATTGTCTCGCC
TGCAAGGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCCTGGTGCCACC
ACCAACAGTATCAGCAACACCAACAACAGCGGCGAGGGCGTGGCCGCATC
GACCGAAAATCCTTTGAATAGCTTTTGTAGACGGTACAACCAATCATTGT
TAGGAAAGGTTGCCCTTCACGAACGACGGGATACTCTGCTGGAAGAGAAT
CGAATGTTGCAGCTCGCCATCCAGCAGTACTTGGACGGGGTGACTGTCAA
TGATGGTATCCTCAATGGGAGTAATCCCCTTCTCGTCGTAAAACCAAAGA
CCAAGACCCCGCCTCGCCCACCTCGTCGCCACGACGGCAGCAGCAACGGC
AGCAGCAGCAGCAGCAGTAGCCACCCTCGAAAGGGGCACCACCCCTGCGT
GATTGAAGGCAACCACATGCTCCAGACCGGCCGGTTGAACACCGCGCCTT
TTTTTGTATAGACGTTGCGGGGGAGGAATATTGGGCGTTATCAGAGGAAG
CAAGGAACAGGAAAGGTAATGATTAAAC
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protein sequence of NO01G03200.1

>NO01G03200.1-protein ID=NO01G03200.1-protein|Name=NO01G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MDGEQDVGSLSLSSPSAPAKLSAKWAALLRLITTDAATKDGIKALAEMYG
RIFKDKDALVRMLMADAKASEQEMQAAYEAHVRQRNSLLAFHRAHTTTLE
GGFTRDLEAMKNEFQTEAALLAKQHAEEQSGLSQLLQSIEAYEKGKQQER
QELQANVREILKRQGQEQIVKLRQNLTSQIDALLQHLQDKAPAFTSAATG
MTGTVTTATGTTGAIETEAKAMAIKDQSLTTLIEAKVRKIDQELQRWKEW
RVNMTTSGKEHSDRNQALINEKRALLDQHRKLKLHMNKHRQNQQKTLKAL
DEDANGAKEDLSAQIELGLRVLNLAELAYKKELEQKGALSRLQGSLVEGT
LFHPPGATTNSISNTNNSGEGVAASTENPLNSFCRRYNQSLLGKVALHER
RDTLLEENRMLQLAIQQYLDGVTVNDGILNGSNPLLVVKPKTKTPPRPPR
RHDGSSNGSSSSSSSHPRKGHHPCVIEGNHMLQTGRLNTAPFFV*
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mRNA from alignment at chr1:842235..844030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03200.1 ID=NO01G03200.1|Name=NO01G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp|location=Sequence derived from alignment at chr1:842235..844030- (Nannochloropsis oceanica)
ATACAACACTGGTGAATCACATAGCTATGGACGGGGAGCAAGATGTGGGG
TCCCTGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTATCAGCTAAATG
GGCCGCCCTTCTGCGCTTGATCACCACCGACGCTGCTACCAAAGATGGCA
TTAAAGCCTTGGCCGAGATGTATGGACGTATATTTAAGGACAAGGATGCT
CTGGTGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAGCAGGAAATGCA
GGCCGCCTACGAGGCGCACGTCCGGCAACGTAATTCTTTGCTCGCATTCC
ACCGTGCGCACACAACTACACTTGAGGGAGGTTTCACCCGCGACCTCGAG
GCCATGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTAGCAAAACAACA
TGCAGAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATCCATCGAGGCCT
ACGAAAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAGCCAACGTGCGG
GAAATTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAGCTCCGCCAAAA
TCTTACGTCGCAAATCGACGCTTTACTTCAACACTTGCAGGACAAGGCAC
CGGCCTTTACTTCTGCAGCCACGGGAATGACAGGAACGGTGACAACGGCG
ACAGGCACCACTGGCGCCATTGAGACGGAAGCCAAGGCTATGGCGATCAA
GGATCAATCACTGACGACTCTTATCGAGGCGAAAGTACGAAAGATCGACC
AGGAGCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGACGACCAGCGGG
AAGGAGCACAGCGATCGGAATCAGGCTTTGATAAACGAAAAGCGGGCCCT
ACTTGACCAGCATCGAAAACTTAAGTTGCACATGAACAAACACCGCCAGA
ATCAGCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAAATGGAGCCAAG
GAAGATTTGAGCGCGCAGATTGAGGTGAGTGTGTGTATGTGTGAGGGAAA
AGACCTTAGTTGTCAATATTACCCCTACACACCGTATTTTATGAGCTCAT
CTTCCATATCTCTACATTAGCTTGGCCTACGGGTACTGAACCTGGCAGAA
TTAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCATTGTCTCGCCTGCA
AGGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCCTGGTGCCACCACCA
ACAGTATCAGCAACACCAACAACAGCGGCGAGGGCGTGGCCGCATCGACC
GAAAATCCTTTGAATAGCTTTTGTAGACGGTACAACCAATCATTGTTAGG
AAAGGTTGCCCTTCACGAACGACGGGATACTCTGCTGGAAGAGAATCGAA
TGTTGCAGGTAAGACAAAGGAAAGAAGTGGGAAAGAACAGAAGAGAAAGT
GCAATGATTGTACAAAAGCGGGAAACTTCCCATCATCAAGACAATCTGAA
ACCACTCTCAATCTCTTTTTGCAACTACAGCTCGCCATCCAGCAGTACTT
GGACGGGGTGACTGTCAATGATGGTATCCTCAATGGGAGTAATCCCCTTC
TCGTCGTAAAACCAAAGACCAAGACCCCGCCTCGCCCACCTCGTCGCCAC
GACGGCAGCAGCAACGGCAGCAGCAGCAGCAGCAGTAGCCACCCTCGAAA
GGGGCACCACCCCTGCGTGATTGAAGGCAACCACATGCTCCAGACCGGCC
GGTTGAACACCGCGCCTTTTTTTGTATAGACGTTGCGGGGGAGGAATATT
GGGCGTTATCAGAGGAAGCAAGGAACAGGAAAGGTAATGATTAAAC
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Coding sequence (CDS) from alignment at chr1:842235..844030-

>NO01G03200.1 ID=NO01G03200.1|Name=NO01G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr1:842235..844030- (Nannochloropsis oceanica)
ATGGACGGGGAGCAAGATGTGGGGTCCCTGTCGCTATCGTCTCCATCCGC
CCCCGCGAAACTATCAGCTAAATGGGCCGCCCTTCTGCGCTTGATCACCA
CCGACGCTGCTACCAAAGATGGCATTAAAGCCTTGGCCGAGATGTATGGA
CGTATATTTAAGGACAAGGATGCTCTGGTGCGGATGCTGATGGCTGATGC
GAAGGCCTCGGAGCAGGAAATGCAGGCCGCCTACGAGGCGCACGTCCGGC
AACGTAATTCTTTGCTCGCATTCCACCGTGCGCACACAACTACACTTGAG
GGAGGTTTCACCCGCGACCTCGAGGCCATGAAAAATGAGTTTCAGACGGA
AGCTGCGCTTTTAGCAAAACAACATGCAGAGGAGCAAAGTGGGCTCAGCC
AGCTGCTGCAATCCATCGAGGCCTACGAAAAGGGCAAGCAGCAGGAGCGC
CAAGAGCTGCAAGCCAACGTGCGGGAAATTTTGAAGCGACAGGGCCAAGA
GCAAATAGTTAAGCTCCGCCAAAATCTTACGTCGCAAATCGACGCTTTAC
TTCAACACTTGCAGGACAAGGCACCGGCCTTTACTTCTGCAGCCACGGGA
ATGACAGGAACGGTGACAACGGCGACAGGCACCACTGGCGCCATTGAGAC
GGAAGCCAAGGCTATGGCGATCAAGGATCAATCACTGACGACTCTTATCG
AGGCGAAAGTACGAAAGATCGACCAGGAGCTCCAAAGGTGGAAGGAGTGG
CGGGTAAATATGACGACCAGCGGGAAGGAGCACAGCGATCGGAATCAGGC
TTTGATAAACGAAAAGCGGGCCCTACTTGACCAGCATCGAAAACTTAAGT
TGCACATGAACAAACACCGCCAGAATCAGCAAAAGACCTTGAAGGCCTTG
GATGAGGACGCAAATGGAGCCAAGGAAGATTTGAGCGCGCAGATTGAGCT
TGGCCTACGGGTACTGAACCTGGCAGAATTAGCATACAAGAAGGAATTGG
AGCAAAAAGGTGCATTGTCTCGCCTGCAAGGCTCATTGGTCGAAGGCACT
CTTTTTCATCCTCCTGGTGCCACCACCAACAGTATCAGCAACACCAACAA
CAGCGGCGAGGGCGTGGCCGCATCGACCGAAAATCCTTTGAATAGCTTTT
GTAGACGGTACAACCAATCATTGTTAGGAAAGGTTGCCCTTCACGAACGA
CGGGATACTCTGCTGGAAGAGAATCGAATGTTGCAGCTCGCCATCCAGCA
GTACTTGGACGGGGTGACTGTCAATGATGGTATCCTCAATGGGAGTAATC
CCCTTCTCGTCGTAAAACCAAAGACCAAGACCCCGCCTCGCCCACCTCGT
CGCCACGACGGCAGCAGCAACGGCAGCAGCAGCAGCAGCAGTAGCCACCC
TCGAAAGGGGCACCACCCCTGCGTGATTGAAGGCAACCACATGCTCCAGA
CCGGCCGGTTGAACACCGCGCCTTTTTTTGTATAG
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Synonyms
Publications