NO01G03070.1, NO01G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03070.1
Unique NameNO01G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2496
Alignment locationchr1:803493..806286 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:803493..806286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03070.1 vs.
Match: EWM29250.1 (hypothetical protein Naga_100119g15 [Nannochloropsis gaditana])

HSP 1 Score: 528.9 bits (1361), Expect = 1.800e-146
Identity = 285/470 (60.64%), Postives = 350/470 (74.47%), Query Frame = 0 
Query:   46 AHRSGGGAWQFGRGTSRNLFAALLVSVVLVAPTVYLLSSSSSSVSSLSSPLLP-FSASSSPQYDSLSFSEPPLSTGARRREEEKNTLLRSIATIT-DHLSPVEAVSPIPSATATTTTNVSNRTLVMYVYHESNEWYKDNLRFFIKVAMQDNDHDDVDYLLIINGESSLPLEVILATTAAQREGRVQLLRRPNTCYDGGSMGEVLRARSRLAESYRYYFLMNSSVRGPFLPRYFQAIFKAKSAEVGSGALAWTSVLTSLLDDEVKLAGTTISCMGQVHVQSMVLATDQLGLGLLLNGGVLDCPTSLNEAIRIYELGATTTILDAGYKIDSLLTRYRGVDWRQKRDLRCNANMNPQGEQMNDGLGLDPFEVVFIKAKEYPRVASTQAFLRRYTDYAMGRDDLTTNGFNSPRVQMALAQERSVLNERVLRCEAYFDAEFYFKQNPDLVGAVQEAHALNHFNDYGFVERRPYRY 514
            A+R GG +      T R L A+LLV++  V PTVY     S+S S+L S  LP F  SS P+Y+ LS S+P L    R+       +LR  + ++  ++S ++ VS         + +   RTLV+YVYHES EWY++NLRFFI+VAMQDND++  DYLL++NG S LPL  +LA+T AQREGRV +L+R NTCYDGG++GEVLR    LAESY YY LMNSSVRGPFLPRYFQ + K +         +WTS LTSLL+DEVKLAGTT+SCMGQVHVQSMVLATD++GL +LL  GVL+C ++L++AIR YE+GA+T IL+AGY +DSL+TRY GVDWRQKRDL CNA MNPQGE MNDGLGLDPFEVVF+KAKE+PRVA+TQAFLRRYT+Y M RDDL +N F SPR+Q AL +E+  L ERVLRC+A FDAEFYF QNPDL GAV+EA A  HF +YGF ERRPY +
Sbjct:    9 AYRDGGQS-----RTLRPLPASLLVALAFVTPTVYFFFQPSASSSTLLSGQLPSFGPSSFPKYEGLSLSQPGLPV--RQDNSRIAAMLRGNSEVSGQNVSDIQTVSHGMEMKFAKSLD-EPRTLVIYVYHESQEWYRENLRFFIRVAMQDNDNNSTDYLLVVNGNSDLPLRGLLASTLAQREGRVWVLQRANTCYDGGTVGEVLRTHPHLAESYFYYVLMNSSVRGPFLPRYFQRM-KGEEGHAEPRRRSWTSPLTSLLNDEVKLAGTTLSCMGQVHVQSMVLATDRIGLKVLLGDGVLNCASTLSDAIRTYEMGASTAILNAGYNVDSLMTRYTGVDWRQKRDLYCNAGMNPQGEHMNDGLGLDPFEVVFVKAKEFPRVAATQAFLRRYTEYYMDRDDLVSNDFMSPRLQAALKEEKEALRERVLRCQATFDAEFYFTQNPDLKGAVKEADAERHFYEYGFFERRPYHF 469
The following BLAST results are available for this feature:
BLAST of NO01G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29250.11.800e-14660.64hypothetical protein Naga_100119g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03070NO01G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03070.1NO01G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03070.1.cds1NO01G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03070.1.cds2NO01G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03070.1 ID=NO01G03070.1|Name=NO01G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp
GTAAGATAAGTGCGGAACCTCTTGTTTATCGATATCCACTGGCCAGGCTA
AGTAAGAGTCCTCCCGTAGCCGCGTAGAAAGAGAGAAATCATGAGAACAG
CGGTGGCAAAAAATATAAAAAATGGGGCATTTCAAAATCAACAGGAAATT
TCATGAGGCATTCAAGGGCTAAGAAGAAGCGCATCTCGTGCGATAAGCAT
AAGTGGCTAGAGTAAGATTGGCACCGAAATACAGAGAAAATGTAAGTGTG
TGTCGTGTGAGAGTGAGAGGCTTTGAAGGATAGGAGGTTGAACTGGCCTA
CAGGCAAATTTTTGTTTTTAAAGTCCACATGCTTGCCTACGGCGAGATAC
ATTTTTCTACGAAGGAAATGAAGTACCCTATAGGATTTGAATGCGTGCGT
GTGTGTACATGCAAACGCCCCGTGAACACATCCACCACGAAAAACGAAAG
CATACCCGACTAGCGAGCTATAGGGGGCGGCTGTTCATACGGAAGGGCCA
ACTACGCATCTTTGTTTCGATTCGCACTTGTAGCGGCGGCTTCACCGATT
ACATATCATGACAGACAGAAAAGATTGATGACAAATTCTGTAGGGAAGCA
GGAAACGCCCAGATTAGATTAAGTAAGAAGCGTCCAACTCGCGGGTTTCG
TGACGAGGGACCTATTGCGCTATTGATCTGATCCATCGATCCAATATTTT
AAATTAACGGCCACAAGTTTGTGTTTACCCATGTGAACTGCCATTTACTC
CACCGCACGTAATGAGCATTTCTGTCGAACCTGGAGCAGGCGTGCAAAGT
GAGCGCTGTCTTTGCTTTGCGCCATTCCCAAGGTATTGCAATCATCACCG
ATGGAATCCGGCTTGCGCGAACTGTTTTCCTCCTTTCGCTTGCCCCCTCT
TACACCATTTCTCACACGATCCAGTCCCAACAAAATGAAAGATAGACAGG
GTAGCAGCATGGTACTATCACACGTATCGTTAACGGCCCACCGATCAGGC
GGCGGTGCCTGGCAGTTTGGCCGCGGCACGTCAAGAAATCTCTTTGCTGC
GCTCCTGGTGTCCGTCGTGTTGGTTGCACCCACAGTGTACCTGCTTTCGT
CGTCCTCGTCGTCGGTGTCATCCTTATCATCACCGTTGCTTCCTTTCTCC
GCTTCCTCGTCACCTCAATACGACAGCTTATCATTCTCAGAGCCGCCTTT
GTCCACCGGCGCAAGAAGAAGAGAAGAAGAGAAGAACACCTTGCTTCGCA
GTATCGCCACCATCACCGACCATTTGTCCCCGGTAGAAGCAGTAAGCCCG
ATACCGAGCGCAACTGCTACTACCACCACTAATGTCTCGAACCGCACTCT
GGTGATGTACGTGTACCATGAGTCCAACGAGTGGTACAAGGACAACCTCC
GCTTCTTCATAAAAGTAGCGATGCAAGACAACGACCACGACGATGTCGAC
TACCTGCTGATTATCAACGGAGAAAGTAGCCTTCCCCTAGAGGTCATTCT
GGCGACAACAGCAGCACAACGTGAAGGCCGTGTGCAACTCCTTCGGCGGC
CCAATACCTGCTACGACGGAGGCAGCATGGGGGAAGTCTTGCGAGCACGA
TCACGTCTAGCCGAGAGCTACCGGTACTACTTCTTAATGAACAGCTCCGT
CCGTGGGCCATTTCTTCCACGCTACTTCCAAGCAATATTTAAGGCTAAAT
CTGCGGAGGTAGGCAGCGGAGCTCTGGCCTGGACGTCCGTTCTGACGAGC
TTGCTCGATGACGAGGTGAAGCTTGCGGGAACGACTATCAGTTGTATGGG
CCAGGTGCACGTACAGTCGATGGTCTTGGCCACTGATCAACTTGGGCTGG
GGCTATTGTTGAACGGGGGGGTGTTAGATTGTCCTACTAGTCTAAACGAG
GCCATTCGCATATATGAGCTTGGGGCGACGACTACTATTCTGGACGCGGG
GTACAAGATCGACAGCCTCCTGACACGCTATCGCGGAGTGGACTGGCGGC
AAAAACGCGACTTGCGATGCAATGCGAATATGAATCCACAGGGGGAACAG
ATGAATGATGGCCTAGGACTGGACCCCTTTGAGGTAGTATTCATCAAGGC
CAAGGAATATCCGCGCGTGGCTTCCACTCAAGCATTTCTGCGCCGATATA
CTGATTACGCGATGGGCCGGGATGATCTAACCACCAACGGATTTAACTCA
CCCCGTGTACAAATGGCGCTTGCCCAAGAGCGATCTGTGCTCAATGAGCG
TGTGCTACGTTGCGAGGCCTATTTTGATGCCGAATTTTACTTTAAACAGA
ACCCGGACTTGGTTGGCGCTGTGCAGGAGGCACATGCCCTCAACCATTTT
AACGATTACGGCTTTGTTGAGCGACGGCCGTACCGATATAAAAGTGGCTG
GAGGAAGTGGCACGACAAAGATTGTCGCTGGGAATAAAAAAGATTGTACA
GCGACTGAAGTGTTCATAAATTTAACAAAGAACCAATAGAGTAAAT
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protein sequence of NO01G03070.1

>NO01G03070.1-protein ID=NO01G03070.1-protein|Name=NO01G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MESGLRELFSSFRLPPLTPFLTRSSPNKMKDRQGSSMVLSHVSLTAHRSG
GGAWQFGRGTSRNLFAALLVSVVLVAPTVYLLSSSSSSVSSLSSPLLPFS
ASSSPQYDSLSFSEPPLSTGARRREEEKNTLLRSIATITDHLSPVEAVSP
IPSATATTTTNVSNRTLVMYVYHESNEWYKDNLRFFIKVAMQDNDHDDVD
YLLIINGESSLPLEVILATTAAQREGRVQLLRRPNTCYDGGSMGEVLRAR
SRLAESYRYYFLMNSSVRGPFLPRYFQAIFKAKSAEVGSGALAWTSVLTS
LLDDEVKLAGTTISCMGQVHVQSMVLATDQLGLGLLLNGGVLDCPTSLNE
AIRIYELGATTTILDAGYKIDSLLTRYRGVDWRQKRDLRCNANMNPQGEQ
MNDGLGLDPFEVVFIKAKEYPRVASTQAFLRRYTDYAMGRDDLTTNGFNS
PRVQMALAQERSVLNERVLRCEAYFDAEFYFKQNPDLVGAVQEAHALNHF
NDYGFVERRPYRYKSGWRKWHDKDCRWE*
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mRNA from alignment at chr1:803493..806286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03070.1 ID=NO01G03070.1|Name=NO01G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2794bp|location=Sequence derived from alignment at chr1:803493..806286+ (Nannochloropsis oceanica)
GTAAGATAAGTGCGGAACCTCTTGTTTATCGATATCCACTGGCCAGGCTA
AGTAAGAGTCCTCCCGTAGCCGCGTAGAAAGAGAGAAATCATGAGAACAG
CGGTGGCAAAAAATATAAAAAATGGGGCATTTCAAAATCAACAGGAAATT
TCATGAGGCATTCAAGGGCTAAGAAGAAGCGCATCTCGTGCGATAAGCAT
AAGTGGCTAGAGTAAGATTGGCACCGAAATACAGAGAAAATGTAAGTGTG
TGTCGTGTGAGAGTGAGAGGCTTTGAAGGATAGGAGGTTGAACTGGCCTA
CAGGCAAATTTTTGTTTTTAAAGTCCACATGCTTGCCTACGGCGAGATAC
ATTTTTCTACGAAGGAAATGAAGTACCCTATAGGATTTGAATGCGTGCGT
GTGTGTACATGCAAACGCCCCGTGAACACATCCACCACGAAAAACGAAAG
CATACCCGACTAGCGAGCTATAGGGGGCGGCTGTTCATACGGAAGGGCCA
ACTACGCATCTTTGTTTCGATTCGCACTTGTAGCGGCGGCTTCACCGATT
ACATATCATGACAGACAGAAAAGATTGATGACAAATTCTGTAGGGAAGCA
GGAAACGCCCAGATTAGATTAAGTAAGAAGCGTCCAACTCGCGGGTTTCG
TGACGAGGGACCTATTGCGCTATTGATCTGATCCATCGATCCAATATTTT
AAATTAACGGCCACAAGTTTGTGTTTACCCATGTGAACTGCCATTTACTC
CACCGCACGTAATGAGCATTTCTGTCGAACCTGGAGCAGGCGTGCAAAGT
GAGCGCTGTCTTTGCTTTGCGCCATTCCCAAGGTATTGCAATCATCACCG
ATGGAATCCGGCTTGCGCGAACTGTTTTCCTCCTTTCGCTTGCCCCCTCT
TACACCATTTCTCACACGATCCAGTCCCAACAAAATGAAAGATAGACAGG
GTAGCAGCATGGTACTATCACACGTATCGTTAACGGCCCACCGATCAGGC
GGCGGTGCCTGGCAGTTTGGCCGCGGCACGTCAAGAAATCTCTTTGCTGC
GCTCCTGGTGTCCGTCGTGTTGGTTGCACCCACAGTGTACCTGCTTTCGT
CGTCCTCGTCGTCGGTGTCATCCTTATCATCACCGTTGCTTCCTTTCTCC
GCTTCCTCGTCACCTCAATACGACAGCTTATCATTCTCAGAGCCGCCTTT
GTCCACCGGCGCAAGAAGAAGAGAAGAAGAGAAGAACACCTTGCTTCGCA
GTATCGCCACCATCACCGACCATTTGTCCCCGGTAGAAGCAGTAAGCCCG
ATACCGAGCGCAACTGCTACTACCACCACTAATGTCTCGAACCGCACTCT
GGTGATGTACGTGTACCATGAGTCCAACGAGTGGTACAAGGACAACCTCC
GCTTCTTCATAAAAGTAGCGATGCAAGACAACGACCACGACGATGTCGAC
TACCTGCTGATTATCAACGGAGAAAGTAGCCTTCCCCTAGAGGTCATTCT
GGCGACAACAGCAGCACAACGTGAAGGCCGTGTGCAACTCCTTCGGCGGC
CCAATACCTGCTACGACGGAGGCAGCATGGGGGAAGTCTTGCGAGCACGA
TCACGTCTAGCCGAGAGCTACCGGTACTACTTCTTAATGAACAGCTCCGT
CCGTGGGCCATTTCTTCCACGCTACTTCCAAGCAATATTTAAGGCTAAAT
CTGCGGAGGTAGGCAGCGGAGCTCTGGCCTGGACGTCCGTTCTGACGAGC
TTGCTCGATGACGAGGTGAAGCTTGCGGGAACGACTATCAGTTGTATGGG
CCAGGTGCACGTACAGTCGATGGTCTTGGCCACTGATCAACTTGGGCTGG
GGCTATTGTTGAACGGGGGGGTGTTAGATTGTCCTACTAGTCTAAACGAG
GCCATTCGCATATATGAGCTTGGGGCGACGACTACTATTCTGGACGCGGG
GTAAGTGCACTTGGGTGATGGAGGGGGGAAGGATAGATCTTGTGCCTGTC
ATGATTGCCATCCCTTTGGTCCATAGAAATAAAAGGATCATACATTGCTG
GTTGTGATGAATTTGGGTTTTGGGTCTTGTGTGCTTCAATTGATCCCTCG
TAGACTCCCCTGTTTCTGCTTGTCGAATCACGACGGGCACATGTTGTGAT
CATTACCATTCTGTTCATGTACACCATGATCAATCTGGCTGTACATCGGC
ATGTCCAATTATCCCTTAACTTGCTCTCAAACGCACGTAATTCACAAGGT
ACAAGATCGACAGCCTCCTGACACGCTATCGCGGAGTGGACTGGCGGCAA
AAACGCGACTTGCGATGCAATGCGAATATGAATCCACAGGGGGAACAGAT
GAATGATGGCCTAGGACTGGACCCCTTTGAGGTAGTATTCATCAAGGCCA
AGGAATATCCGCGCGTGGCTTCCACTCAAGCATTTCTGCGCCGATATACT
GATTACGCGATGGGCCGGGATGATCTAACCACCAACGGATTTAACTCACC
CCGTGTACAAATGGCGCTTGCCCAAGAGCGATCTGTGCTCAATGAGCGTG
TGCTACGTTGCGAGGCCTATTTTGATGCCGAATTTTACTTTAAACAGAAC
CCGGACTTGGTTGGCGCTGTGCAGGAGGCACATGCCCTCAACCATTTTAA
CGATTACGGCTTTGTTGAGCGACGGCCGTACCGATATAAAAGTGGCTGGA
GGAAGTGGCACGACAAAGATTGTCGCTGGGAATAAAAAAGATTGTACAGC
GACTGAAGTGTTCATAAATTTAACAAAGAACCAATAGAGTAAAT
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Coding sequence (CDS) from alignment at chr1:803493..806286+

>NO01G03070.1 ID=NO01G03070.1|Name=NO01G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr1:803493..806286+ (Nannochloropsis oceanica)
ATGGAATCCGGCTTGCGCGAACTGTTTTCCTCCTTTCGCTTGCCCCCTCT
TACACCATTTCTCACACGATCCAGTCCCAACAAAATGAAAGATAGACAGG
GTAGCAGCATGGTACTATCACACGTATCGTTAACGGCCCACCGATCAGGC
GGCGGTGCCTGGCAGTTTGGCCGCGGCACGTCAAGAAATCTCTTTGCTGC
GCTCCTGGTGTCCGTCGTGTTGGTTGCACCCACAGTGTACCTGCTTTCGT
CGTCCTCGTCGTCGGTGTCATCCTTATCATCACCGTTGCTTCCTTTCTCC
GCTTCCTCGTCACCTCAATACGACAGCTTATCATTCTCAGAGCCGCCTTT
GTCCACCGGCGCAAGAAGAAGAGAAGAAGAGAAGAACACCTTGCTTCGCA
GTATCGCCACCATCACCGACCATTTGTCCCCGGTAGAAGCAGTAAGCCCG
ATACCGAGCGCAACTGCTACTACCACCACTAATGTCTCGAACCGCACTCT
GGTGATGTACGTGTACCATGAGTCCAACGAGTGGTACAAGGACAACCTCC
GCTTCTTCATAAAAGTAGCGATGCAAGACAACGACCACGACGATGTCGAC
TACCTGCTGATTATCAACGGAGAAAGTAGCCTTCCCCTAGAGGTCATTCT
GGCGACAACAGCAGCACAACGTGAAGGCCGTGTGCAACTCCTTCGGCGGC
CCAATACCTGCTACGACGGAGGCAGCATGGGGGAAGTCTTGCGAGCACGA
TCACGTCTAGCCGAGAGCTACCGGTACTACTTCTTAATGAACAGCTCCGT
CCGTGGGCCATTTCTTCCACGCTACTTCCAAGCAATATTTAAGGCTAAAT
CTGCGGAGGTAGGCAGCGGAGCTCTGGCCTGGACGTCCGTTCTGACGAGC
TTGCTCGATGACGAGGTGAAGCTTGCGGGAACGACTATCAGTTGTATGGG
CCAGGTGCACGTACAGTCGATGGTCTTGGCCACTGATCAACTTGGGCTGG
GGCTATTGTTGAACGGGGGGGTGTTAGATTGTCCTACTAGTCTAAACGAG
GCCATTCGCATATATGAGCTTGGGGCGACGACTACTATTCTGGACGCGGG
GTACAAGATCGACAGCCTCCTGACACGCTATCGCGGAGTGGACTGGCGGC
AAAAACGCGACTTGCGATGCAATGCGAATATGAATCCACAGGGGGAACAG
ATGAATGATGGCCTAGGACTGGACCCCTTTGAGGTAGTATTCATCAAGGC
CAAGGAATATCCGCGCGTGGCTTCCACTCAAGCATTTCTGCGCCGATATA
CTGATTACGCGATGGGCCGGGATGATCTAACCACCAACGGATTTAACTCA
CCCCGTGTACAAATGGCGCTTGCCCAAGAGCGATCTGTGCTCAATGAGCG
TGTGCTACGTTGCGAGGCCTATTTTGATGCCGAATTTTACTTTAAACAGA
ACCCGGACTTGGTTGGCGCTGTGCAGGAGGCACATGCCCTCAACCATTTT
AACGATTACGGCTTTGTTGAGCGACGGCCGTACCGATATAAAAGTGGCTG
GAGGAAGTGGCACGACAAAGATTGTCGCTGGGAATAA
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Synonyms
Publications