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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:760621..763828 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02920.3 vs.
Match: EWM29217.1 (syntaxin 6 [Nannochloropsis gaditana]) HSP 1 Score: 164.5 bits (415), Expect = 3.200e-37 Identity = 81/124 (65.32%), Postives = 97/124 (78.23%), Query Frame = 0
Query: 3 AQDPFFAAREELRGKADYIHARHEKLLRLLKATNTASDPGFKALYACLYRDVEAADRQCNELEKVVALVENHRQRFRHIDNNELAERRAFVTRTKQSLVKVWNNLKSDHVKGKMSNDERDFQRS 127
AQDPFFAAREELR + DYI +HE LRLL+ TNTA D + L L R++EAA+ QC ELEKVVA+VE +RQRFRHIDN+E+ +RRAFVT+ KQSLVK+WNNL+SD+VK KMS D RD S
Sbjct: 2 AQDPFFAAREELRNRVDYIQTQHENFLRLLQTTNTAPDLSCRDLRDSLCREIEAAENQCRELEKVVAVVEKNRQRFRHIDNHEIGQRRAFVTKMKQSLVKIWNNLESDYVKNKMSGDRRDVSMS 125
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02920.3 ID=NO01G02920.3|Name=NO01G02920.3|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp AGACTGCTGCGTCGTACTTTGGATAATCGAAATGGCTGCGCAGGACCCAT TTTTCGCAGCCCGAGAGGAGTTGCGAGGCAAGGCAGACTACATCCACGCC CGGCATGAAAAGCTATTACGGCTCTTGAAGGCCACAAATACTGCCAGCGA CCCAGGATTTAAGGCGCTGTACGCCTGCTTGTACCGGGACGTGGAGGCGG CAGATAGGCAGTGCAACGAGTTGGAGAAGGTCGTGGCCTTGGTAGAGAAC CACCGCCAGCGCTTCCGACATATTGACAATAACGAGTTAGCGGAGCGCCG GGCTTTCGTGACACGGACGAAGCAGTCACTGGTGAAAGTCTGGAACAACT TGAAGAGCGACCACGTCAAGGGCAAGATGAGCAACGACGAGAGGGACTTC CAACGCAGCCGCCCATACGATGGCAGCGCGATGGGCCACCCAACGGCGGC CGGCAGGGGAGGAGTTGGAGGAGGGGCTAACGGGGCGTTTATTGACGAGC AGCGCTCTAGGCAACATGTAAGAGCTCGGAGGGGTAGGAGGGGATTGGGG CAGGAGAGAGGGATGGGGAGAGTGGTGCCAGGGGGATGAAGTCGCTGAGC CAATGGCGAGTTCAACGACAAACATCGTGCCAGACAACGTGTGAAGGAAA GATGGGGGGGTCCCTCAAGGAGGGGGAGAAGATGGAAGGAGGGGGGAACC TAAGGAGGGGGAGAAGAGGGGAAGAGACGATTAAAGACGGGAAGGCCCTG CTCGCCTGGAGGAGCATGCGTCTTATTCTCTTTCCCTTTCACACGTCCCA GCTGATGCTGCAGGAGCAAGACCAAGGGTTGGAAGAGCTAGGCACGGCAG TGGACCGAGTGGGGCGGATGGCTGATGCCATGAATCAGGAGTTGAATGCG CAGAATCGGATGTTAGGGGATTTAGAGGTGGAGGTGGAGAATACGAACGA GCAGATGAATTTTGTCATGGGCAGGCTGAGTAAGCTGTTGAAGACGAAAG ACAAGTACCAGCTGTGGCTCATCATCTTTTTGACGGTGGTACTGATTGTC CTCATCATCCTCACGATATACGTTTAAAGCAAAATTGGAGCAGCCACCAC ATAGGCTACTCAATTGTGTCGTCATCTGCATCTATTCCGTGGGCTCTCAG TGTGTGGGTGGGTTGCCACCTTCTGGGAGGCGGGACGGAGGGCGCATGGA GGGGCGGGTCTTTAAACGATCGAATGCGTGTATGTGTGCAGGTGTCTTTA TATGTACAGACGGGGACCAAAGAAGAAAAAAGAGATATTCTCGCACACTA AAACAAAGCAAAGCTGATATATTAGAGTAAGTGATAGAAGGAGAAGACGA AGAAGAAGAAGAAGAGGAAGGTGAAGGAAGATGAAGGAAAAGAAGCAACA CCAATTAATGTTCTAAGTGAGAGGGCAAGCGATCAACCCAAATGCCTCTC GTTCCTTCTTTCTTCTTTTACCATTTGTCTTTGTATATTCACAGACAGCT ACAAACAGATAGAAATAGACTACTGATAGACTTGACACTTTTTCCAGTTT TCACGTACAAACCGAATCTCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTATCTATCTCTATCTATCTATCTACCTATCTATC TATCTATTTACCTCACATATTACACCACCCACAGCGCAATTCCTCTACTC CCCTTCCCCCCTTCTTTTCCTCCCTCCCTCTTCACCCTCCCCCTGACTGC AAGGGCTTGAGTCCTGACCCCAATTCAATAGCCCGCCCCACATTCAGTAC AGTGGCATCCTCCCATCGTCTTCCAACCACTTGCACGCCAATCGGCAACC CCCCATTCCCCTTCTTGCCCGCCCTTCCGGAGGACGACGAAGCGGGGGAA GAAACCCCAGCATTAACGCTCAAGGCCGGGTGGCCGGTTAGATCAAACGC CGCAATGTTCTGGAGTGCGGCCCAGGCATGCGTGATGCCCTAAAAAAGGA GCACGGGAGAGACGCAAGAAGATAAGGGATGATGAGTGCAAGGACTTCAA TTCAGGGAGAAAGGGAAAGGGAGAGAGGGGAAAGGACGGATTTAACCCTC GTGGGGTCCTTCCAGCCGGTGGCATGAGCTTGGGCTTGGTGGGCGGGCAT GGGATGAGAAAGGGAAGGAGGGAGGGA back to topprotein sequence of NO01G02920.3 >NO01G02920.3-protein ID=NO01G02920.3-protein|Name=NO01G02920.3|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp MAAQDPFFAAREELRGKADYIHARHEKLLRLLKATNTASDPGFKALYACL YRDVEAADRQCNELEKVVALVENHRQRFRHIDNNELAERRAFVTRTKQSL VKVWNNLKSDHVKGKMSNDERDFQRSRPYDGSAMGHPTAAGRGGVGGGAN GAFIDEQRSRQHVRARRGRRGLGQERGMGRVVPGG* back to topmRNA from alignment at chr1:760621..763828- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02920.3 ID=NO01G02920.3|Name=NO01G02920.3|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at chr1:760621..763828- (Nannochloropsis oceanica) AGACTGCTGCGTCGTACTTTGGATAATCGAAATGGCTGCGCAGGACCCAT
TTTTCGCAGCCCGAGAGTAAGTGACTGGCATGAGGGTTGGTTGAGAGGTT
GTCTTCGTCCGGTTTGCATGAAACATCATATGCAGGCAATAACTGGCACA
AGCAATAGTGTGCGGGAGGCTGGCTGGGATTTCGGCGCTCCTGTAGTCGC
CCTGCTTTTTGACGTATCAGAACACGGGGGAGGGAGGGAGGGAGGCCCAT
TTACTCGGCACCCTTGCCGTGGCACCGTCGACGTATAAGACCAGAGGAAA
GAATGAGGGTGGCTGGTGATATTATTTTCGTTCCGCTCTTAAGCGGTCGG
AGGAAGTGTATCGCGGAGGAAGCAGAGAGAGGGGCGTCCTTGCTCATTCC
CGTCTGATTTACTTACTCGACGTCACTCACACATCAACAGGGAGTTGCGA
GGCAAGGCAGACTACATCCACGCCCGGCATGAAAAGCTATTACGGCTCTT
GAAGGCCACAAATACTGCCAGCGACCCAGGATTTAAGGCGCTGTACGCCT
GTACGTAGGGCGAGCTAGCTACCGGAGAGAGGGCTCGGGCGGTGGGAGGG
TAGCCTGGACCTATCCACTCCTTCTCTCGTGCACAAACTAAGCTATGAAT
GCAGGGATTGAAAGAAAAACGGTATTTTTCAGTTGTTGCTATTGGTTTTC
CTACAAGCACGAACTCAACACGGTCATGCATCCTCTCATTCTTGTAGGCT
TGTACCGGGACGTGGAGGCGGCAGATAGGCAGTGCAACGAGTTGGAGAAG
GTCGTGGCCTTGGTAGAGAACCACCGCCAGCGCTTCCGACATATTGACAA
TGTGAGTGAGTGAGGATAAAGGGCAAGATATAGCTTGGATACAGGGAAGC
GAGCAAGAGGTGCCAAGGGCGAGATCTTCACGAATGAAGAAACATGGCTA
GCTTTTCCTCATGTCCTCCTTCCACACGGACACACATACACCTACAGAAC
GAGTTAGCGGAGCGCCGGGCTTTCGTGACACGGACGAAGCAGTCACTGGT
GAAAGTCTGGAACAACTTGAAGAGCGACCACGTCAAGGGCAAGATGAGCA
ACGACGAGAGGGACGTAAGTGTCTTGTGAGAGTCGGTGGGGCTGGAGGGA
AAGGAGAAATATTGGGAAACCGAATTTGATCCATCAACGATACCGAGCTG
TGTGTGAAGAAAGACCAACGCTCCTCATATATTTAATTCTCGCTCCCAAA
TCTCTCCTTTCCTCTTTTATATCTTCTGCATACAGTTCCAACGCAGCCGC
CCATACGATGGCAGCGCGATGGGCCACCCAACGGCGGCCGGCAGGGGAGG
AGTTGGAGGAGGGGCTAACGGGGCGTTTATTGACGAGCAGCGCTCTAGGC
AACATGTAAGAGCTCGGAGGGGTAGGAGGGGATTGGGGCAGGAGAGAGGG
ATGGGGAGAGTGGTGCCAGGGGGATGAAGTCGCTGAGCCAATGGCGAGTT
CAACGACAAACATCGTGCCAGACAACGTGTGAAGGAAAGATGGGGGGGTC
CCTCAAGGAGGGGGAGAAGATGGAAGGAGGGGGGAACCTAAGGAGGGGGA
GAAGAGGGGAAGAGACGATTAAAGACGGGAAGGCCCTGCTCGCCTGGAGG
AGCATGCGTCTTATTCTCTTTCCCTTTCACACGTCCCAGCTGATGCTGCA
GGAGCAAGACCAAGGGTTGGAAGAGCTAGGCACGGCAGTGGACCGAGTGG
GGCGGATGGCTGATGCCATGAATCAGGAGTTGAATGCGCAGAATCGGATG
TTAGGGGATTTAGAGGTGGAGGTGGAGAATACGAACGAGCAGATGAATTT
TGTCATGGGCAGGCTGAGTAAGCTGTTGAAGACGAAAGGTAAGTTCGAAC
TTGGCAAGACTGGGGGTGGGGTCGGGGGGGAGGTTTTGGGGATGAGTTTT
AAGATGACACATTTTATCGATTCTAATTGCATTTTTATTTTTATTTTAAA
TTTCCTCGCATGCACACACGCACACACACAGACAAGTACCAGCTGTGGCT
CATCATCTTTTTGACGGTGGTACTGATTGTCCTCATCATCCTCACGATAT
ACGTTTAAAGCAAAATTGGAGCAGCCACCACATAGGCTACTCAATTGTGT
CGTCATCTGCATCTATTCCGTGGGCTCTCAGTGTGTGGGTGGGTTGCCAC
CTTCTGGGAGGCGGGACGGAGGGCGCATGGAGGGGCGGGTCTTTAAACGA
TCGAATGCGTGTATGTGTGCAGGTGTCTTTATATGTACAGACGGGGACCA
AAGAAGAAAAAAGAGATATTCTCGCACACTAAAACAAAGCAAAGCTGATA
TATTAGAGTAAGTGATAGAAGGAGAAGACGAAGAAGAAGAAGAAGAGGAA
GGTGAAGGAAGATGAAGGAAAAGAAGCAACACCAATTAATGTTCTAAGTG
AGAGGGCAAGCGATCAACCCAAATGCCTCTCGTTCCTTCTTTCTTCTTTT
ACCATTTGTCTTTGTATATTCACAGACAGCTACAAACAGATAGAAATAGA
CTACTGATAGACTTGACACTTTTTCCAGTTTTCACGTACAAACCGAATCT
CCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT
CTATCTCTATCTATCTATCTACCTATCTATCTATCTATTTACCTCACATA
TTACACCACCCACAGCGCAATTCCTCTACTCCCCTTCCCCCCTTCTTTTC
CTCCCTCCCTCTTCACCCTCCCCCTGACTGCAAGGGCTTGAGTCCTGACC
CCAATTCAATAGCCCGCCCCACATTCAGTACAGTGGCATCCTCCCATCGT
CTTCCAACCACTTGCACGCCAATCGGCAACCCCCCATTCCCCTTCTTGCC
CGCCCTTCCGGAGGACGACGAAGCGGGGGAAGAAACCCCAGCATTAACGC
TCAAGGCCGGGTGGCCGGTTAGATCAAACGCCGCAATGTTCTGGAGTGCG
GCCCAGGCATGCGTGATGCCCTAAAAAAGGAGCACGGGAGAGACGCAAGA
AGATAAGGGATGATGAGTGCAAGGACTTCAATTCAGGGAGAAAGGGAAAG
GGAGAGAGGGGAAAGGACGGATTTAACCCTCGTGGGGTCCTTCCAGCCGG
TGGCATGAGCTTGGGCTTGGTGGGCGGGCATGGGATGAGAAAGGGAAGGA
GGGAGGGA back to topCoding sequence (CDS) from alignment at chr1:760621..763828- >NO01G02920.3 ID=NO01G02920.3|Name=NO01G02920.3|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr1:760621..763828- (Nannochloropsis oceanica) ATGGCTGCGCAGGACCCATTTTTCGCAGCCCGAGAGGAGTTGCGAGGCAA GGCAGACTACATCCACGCCCGGCATGAAAAGCTATTACGGCTCTTGAAGG CCACAAATACTGCCAGCGACCCAGGATTTAAGGCGCTGTACGCCTGCTTG TACCGGGACGTGGAGGCGGCAGATAGGCAGTGCAACGAGTTGGAGAAGGT CGTGGCCTTGGTAGAGAACCACCGCCAGCGCTTCCGACATATTGACAATA ACGAGTTAGCGGAGCGCCGGGCTTTCGTGACACGGACGAAGCAGTCACTG GTGAAAGTCTGGAACAACTTGAAGAGCGACCACGTCAAGGGCAAGATGAG CAACGACGAGAGGGACTTCCAACGCAGCCGCCCATACGATGGCAGCGCGA TGGGCCACCCAACGGCGGCCGGCAGGGGAGGAGTTGGAGGAGGGGCTAAC GGGGCGTTTATTGACGAGCAGCGCTCTAGGCAACATGTAAGAGCTCGGAG GGGTAGGAGGGGATTGGGGCAGGAGAGAGGGATGGGGAGAGTGGTGCCAG GGGGATGA back to top
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