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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:756295..758369 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02900.1 vs.
Match: EWM29147.1 (anion exchanger family [Nannochloropsis gaditana]) HSP 1 Score: 845.9 bits (2184), Expect = 8.400e-242 Identity = 464/641 (72.39%), Postives = 505/641 (78.78%), Query Frame = 0
Query: 9 GGVALALFSAYPAHSFCYSRFSLPVVDRTTLSSASPSSSISSSSPFSGRSLPSSRGGNARTYGEPLRVSMPFHIRFSTGVAMPPDDSPSSYSSSSRSSSTASLYSAPTSSSSPSSFPALPSRGWRIEWFKGLREDIANRRPLYKSDWTDGMKVKTIPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLLSCGVSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCNSFGLAFMPMYTWVGIWTSLMLVTLSSANACLLTKHCTRFTDEVFNALLALNFTYEALKNIVVRFFSTGTDKTQPFLALNMALATFALSQRLVSYRSSILFTRRIRGFLSDFGPALTIIIMTLLGSLPMVRGLGIEYLKAPKRFQFGNGRRLFVPLWDLPVWARGLALVPAAALTVLFFLDHNISVRVVNSPDNKMKKSPAYHLDLFVLGSIVFLCSIVGLPWMCAATIQSLNHVRSVTEYEPVGVGEGGKGGGTAAVVVSGSGGGKGDVKQEEEETATVMETRLTGLGIHALVLSSIGLLPLLRRIPIPVISGIFLYLGRTVMTGNTFLQRVKGAFFDKSMLPEDSPFKRLGRTTVNKFTAIQVGCLAVLWTLKSNPATGMFFPSVIGMLILTRILVIPRLFSKEEISVLD 650
G +AL + S +FC R + P+V T+ P SS + SP L G + MPF++RF +P + T+S AP SS + S + RIEWF+G+RED +NR PLYKSDW DG+K KT+PTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFL+SCG+SGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFC+SFG+AFMPMYTWVGIWTSLML LSSANAC LTKHCTRFTDEVFNALLALNF YEALKNI VRFF+TGTDKTQP LALNMALATFALSQRLVSYRSSILFT RIR FLSDFGPALTIIIMT +GSLPMV LGIEYLKAPKRFQ GNGR VPLWDLP+WARGLAL+PAA LT+LFFLDHNISVRVVNSPDNKMKKSPAYHLDL VLGSIV LCS++GLPWMCAATIQSLNHVRSVT+Y P V VS S GG E++ T VMETRLTGLGIHA+VL SIGLLPLLRRIP PVISGIFLYLGRTVMTGNTFLQR+KGAFFDKSML DSPFK LGR TVNK+T+IQ+GCLAVLW LKSNPATGMFFPSVIG+LILTRILVIPRLFSK EI+VLD
Sbjct: 60 GAMALVVLSTTMVDAFCSYRLT-PMVAGTSRRGVLPRSSPPTLSPQRDPRLVWMAGCPGHSDAH-----MPFYVRFRA--------NPVTQFEGMDMPLTSSSALAPGSSRAQS-------KTRRIEWFRGIREDFSNRLPLYKSDWVDGVKGKTLPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLVSCGMSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCSSFGVAFMPMYTWVGIWTSLMLGLLSSANACSLTKHCTRFTDEVFNALLALNFIYEALKNIAVRFFTTGTDKTQPLLALNMALATFALSQRLVSYRSSILFTHRIREFLSDFGPALTIIIMTFVGSLPMVSSLGIEYLKAPKRFQLGNGRSWLVPLWDLPLWARGLALIPAAFLTILFFLDHNISVRVVNSPDNKMKKSPAYHLDLLVLGSIVLLCSLLGLPWMCAATIQSLNHVRSVTDYVP----------APGPVTVSESKGG----PDEQQRTTYVMETRLTGLGIHAMVLCSIGLLPLLRRIPTPVISGIFLYLGRTVMTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC ACGCACGTATGGAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGT TTAGTACCGGTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCC TCCTCATCCCGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTC CTCCTCTTCCCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAA TAGAATGGTTTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTC TATAAATCGGATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCAT CCTCTTTTTATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGA TCAGCTATGGGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTG TCTTGTGGGGTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAAT GACCTTCATCGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCT TCAATTTTTGCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGG GTAGGGATCTGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGC CTGTTTGTTGACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACG CGCTCTTGGCGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTC CGCTTCTTCTCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAA CATGGCCTTGGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTT CTTCGATCCTCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGC CCCGCCCTCACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGT CCGTGGCCTGGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCG GTAACGGGCGGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCG CGTGGATTGGCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTT AGATCACAATATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGA AGAAAAGCCCGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTC TTTTTGTGCTCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCA GAGCCTGAATCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAG GAGAAGGAGGAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGC GGAGGAGGTAAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGT GATGGAGACGCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGA GCATTGGCCTTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGT GGCATCTTTCTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTT ACAACGGGTCAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACT CGCCCTTCAAACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATT CAGGTGGGCTGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAAC CGGGATGTTTTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCT TGGTGATCCCGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTG GATTAG back to topprotein sequence of NO01G02900.1 >NO01G02900.1-protein ID=NO01G02900.1-protein|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp MLSKRQLTGGVALALFSAYPAHSFCYSRFSLPVVDRTTLSSASPSSSISS SSPFSGRSLPSSRGGNARTYGEPLRVSMPFHIRFSTGVAMPPDDSPSSYS SSSRSSSTASLYSAPTSSSSPSSFPALPSRGWRIEWFKGLREDIANRRPL YKSDWTDGMKVKTIPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLL SCGVSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCNSFGLAFMPMYTW VGIWTSLMLVTLSSANACLLTKHCTRFTDEVFNALLALNFTYEALKNIVV RFFSTGTDKTQPFLALNMALATFALSQRLVSYRSSILFTRRIRGFLSDFG PALTIIIMTLLGSLPMVRGLGIEYLKAPKRFQFGNGRRLFVPLWDLPVWA RGLALVPAAALTVLFFLDHNISVRVVNSPDNKMKKSPAYHLDLFVLGSIV FLCSIVGLPWMCAATIQSLNHVRSVTEYEPVGVGEGGKGGGTAAVVVSGS GGGKGDVKQEEEETATVMETRLTGLGIHALVLSSIGLLPLLRRIPIPVIS GIFLYLGRTVMTGNTFLQRVKGAFFDKSMLPEDSPFKRLGRTTVNKFTAI QVGCLAVLWTLKSNPATGMFFPSVIGMLILTRILVIPRLFSKEEISVLDV D* back to topmRNA from alignment at chr1:756295..758369- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp|location=Sequence derived from alignment at chr1:756295..758369- (Nannochloropsis oceanica) ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG
CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG
TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC
TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC
ACGCACGTATGGAGGTAAGGGAATCTACTGAATGGGCTATTAGGGTTGCA
CGGCAGGTGTAAGGAAAGGAGCTGCTTCAACCCTCGCGTCCGTCTTCCTC
ACACCCACTGAATCGCCTCTCCCTCTCTCACAGAGCCTCTACGTGTCTCG
ATGCCCTTTCACATAAGGTTTAGTACCGGTGTAGCCATGCCACCGGACGA
CTCTCCCTCCTCCTATTCCTCCTCATCCCGGTCATCATCCACCGCTTCCC
TCTACTCAGCCCCCACCTCCTCCTCTTCCCCCTCCTCTTTCCCCGCCTTG
CCCAGCCGAGGATGGAGAATAGAATGGTTTAAGGGCCTCAGGGAGGACAT
TGCCAATCGTAGGCCGCTCTATAAATCGGATTGGACCGATGGAATGAAAG
TAAAGACGATTCCGACCATCCTCTTTTTATACTTTGCCTGTTTGGCTCCT
GCGGTTGCATTTGGAGGGATCAGCTATGGGTTGACACAGGGGGCTATGGG
CGTCATTGAGTTCTTGCTGTCTTGTGGGGTGTCGGGCATGTTGTATGCAA
TTTTTTCGGGGCAGCCAATGACCTTCATCGGCCCCACGGGACTGACATTG
TGTTTTATGGCTGCGCTCTTCAATTTTTGCAATTCTTTTGGGTTGGCGTT
CATGCCCATGTACACCTGGGTAGGGATCTGGACGAGCCTGATGCTTGTGA
CGCTGTCATCCGCGAATGCCTGTTTGTTGACCAAGCACTGTACGCGCTTT
ACGGACGAGGTGTTCAACGCGCTCTTGGCGCTGAATTTTACCTACGAAGC
TCTCAAAAATATCGTCGTCCGCTTCTTCTCCACCGGTACCGACAAAACCC
AACCCTTCCTCGCCCTCAACATGGCCTTGGCAACATTTGCCCTGTCCCAA
CGCCTGGTCTCGTACCGTTCTTCGATCCTCTTCACGCGTCGCATCCGAGG
CTTCTTGTCGGATTTCGGCCCCGCCCTCACCATCATCATCATGACGTTGC
TCGGCTCCCTACCCATGGTCCGTGGCCTGGGCATCGAGTATTTGAAAGCC
CCGAAACGGTTCCAGTTCGGTAACGGGCGGCGTTTATTCGTCCCTTTGTG
GGATTTACCGGTCTGGGCGCGTGGATTGGCGTTGGTACCGGCGGCGGCCT
TGACAGTGTTGTTCTTTTTAGATCACAATATTAGTGTGCGGGTGGTAAAT
TCACCCGACAACAAGATGAAGAAAAGCCCGGCGTATCACCTGGATTTGTT
TGTGCTAGGGAGCATTGTCTTTTTGTGCTCGATTGTGGGGTTGCCGTGGA
TGTGTGCGGCGACGATTCAGAGCCTGAATCATGTGAGGAGTGTCACTGAG
TATGAACCTGTCGGAGTAGGAGAAGGAGGAAAGGGGGGGGGAACAGCAGC
AGTAGTTGTAAGCGGAAGCGGAGGAGGTAAAGGAGATGTAAAACAGGAAG
AGGAAGAGACGGCGACTGTGATGGAGACGCGGTTGACGGGCTTGGGGATC
CACGCCCTGGTGTTGTCGAGCATTGGCCTTTTGCCTCTATTGAGACGTAT
CCCGATTCCCGTGATCAGTGGCATCTTTCTTTATCTTGGCCGGACGGTCA
TGACGGGCAATACGTTCTTACAACGGGTCAAGGGCGCGTTTTTTGACAAG
AGTATGCTACCCGAAGACTCGCCCTTCAAACGGTTGGGGAGAACGACTGT
GAACAAGTTTACGGCGATTCAGGTGGGCTGCTTGGCGGTGTTGTGGACCT
TGAAGAGTAATCCGGCAACCGGGATGTTTTTCCCGAGCGTGATTGGGATG
TTGATTCTGACGAGGATCTTGGTGATCCCGCGGTTGTTTTCCAAGGAGGA
GATTTCGGTGTTGGATGTGGATTAG back to topCoding sequence (CDS) from alignment at chr1:756295..758369- >NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at chr1:756295..758369- (Nannochloropsis oceanica) ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC ACGCACGTATGGAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGT TTAGTACCGGTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCC TCCTCATCCCGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTC CTCCTCTTCCCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAA TAGAATGGTTTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTC TATAAATCGGATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCAT CCTCTTTTTATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGA TCAGCTATGGGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTG TCTTGTGGGGTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAAT GACCTTCATCGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCT TCAATTTTTGCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGG GTAGGGATCTGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGC CTGTTTGTTGACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACG CGCTCTTGGCGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTC CGCTTCTTCTCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAA CATGGCCTTGGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTT CTTCGATCCTCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGC CCCGCCCTCACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGT CCGTGGCCTGGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCG GTAACGGGCGGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCG CGTGGATTGGCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTT AGATCACAATATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGA AGAAAAGCCCGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTC TTTTTGTGCTCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCA GAGCCTGAATCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAG GAGAAGGAGGAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGC GGAGGAGGTAAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGT GATGGAGACGCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGA GCATTGGCCTTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGT GGCATCTTTCTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTT ACAACGGGTCAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACT CGCCCTTCAAACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATT CAGGTGGGCTGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAAC CGGGATGTTTTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCT TGGTGATCCCGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTG GATTAG back to top
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