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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:710028..712419 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02740.1 vs.
Match: EWM22450.1 (hypothetical protein Naga_100011g69 [Nannochloropsis gaditana]) HSP 1 Score: 362.8 bits (930), Expect = 1.600e-96 Identity = 195/434 (44.93%), Postives = 262/434 (60.37%), Query Frame = 0
Query: 26 RNLSMVVIAGTILALYIMAFSYGPRKA---FKGGDQGPGAQLNAARAGRKRGQSALVETEYNQNPPFHVAFSTSCSPFQDWQSLLVFLTADMVGQKGPLTRIASGCTLEEQAALETVYAKLDQGRNKFRIHFTPDFSKDEASGETYYFYNKPGGLQHWLASPASPPD-DTVIAVIDPDFIFMRPLTAKVKADGIIFSGPIQAEDLIEEVSVGHPAAQYYGIGDKWIEFNLTYIAGEDSPALAVKSMSAWKHYSIGPPYIVAKADMVRIAQLWHSVVPRVYEGHPHLLAEMYAYSVAAAHLELPHLRLDGYMTSEAEGYGEAWPLVDLLTDESICSEDLSLHTTLLPTFLHYCQHYKVGTEFVYWKRDLDENFFSCGGSPLPLPNLEQVREYLDPISGPALSVNDRAYHKYHTFQYCQVVMKTNKALQKYKSLFC 456
R L V I G L+I+ GP A +G + A+ K S E ++ ++ FST CS +Q+WQSL VF TAD V Q G + RIASGC+ E+ ++ +Y D +F++HFTP+F KD SG++Y FYNKP GLQHWL S A+P D ++A++DPDF+FMRPLT KVK D +++S P+ DLI+EV GHP AQYYGIG +W +F + YIAG+DSPA V A ++YS+G PYI DM +IA+ W + VPRVYE +PHLLAEMYAYS+AAAHLELPHLRLD YM S + GE WP VD LTD+ +CS + P FLHYCQ Y+V + + KR + N F+C SPL + E + + +G ++ + + + C V+ K N A K+K+L C
Sbjct: 24 RGLGFVAIVGFSWGLFILTRLAGPVLAPISREGSENRNALDTLASVPPAKNDPSMWQWNEAPEDDRLYLVFSTDCSGYQNWQSLAVFFTADAVRQPGTIVRIASGCSEAEKKEVQKLY---DTFPVRFQVHFTPNFKKDAKSGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFLFMRPLTYKVKQDRVLYSPPVTDGDLIDEVREGHPVAQYYGIGSQWTKFKVEYIAGKDSPASKVSISDASRYYSVGAPYIAHVKDMRKIAESWANFVPRVYEEYPHLLAEMYAYSIAAAHLELPHLRLDHYMVSNTQAAGEGWPFVDRLTDKYVCSAEAPDQGQEQPVFLHYCQFYRV-EHWGFHKRRVATNLFTC-KSPLFIMPPEDLEDTHWKDNGDKKTMYSKQEAQRAAYMLCNVIRKLNGAAVKFKNLNC 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp TGGGCTGATCGGTGCGCAAATCCTATGGGTGGGTGTAGTAGGGGGGCGTA CTACCGGAATGAGGGGAGGGCGGGGACTTTTTATCAAGGAAGGCGCTCCG TGCTGAGGGCTTGGGACGATGATGACGACAAAGATAAGGGGAAGGTGCTC AGGTGCTGCGATTATCGAAGGTGTGGAGCGATGTCGCACGTGCTAAGAAA AGTATGAGGCCTTCACTTCAGATGCTCGCCGGAGGACTCTCGCGAGCCCG TCGTGAGCTCACAACGACGACGCCCAACGGCTTCCGGCCTCATGTTTTCT TCAAATTTCATCTCGCACGACGATCGAAATGTGTACATTCGAAATGCTAT CTCCCCAGGGGGAAGGGGGGAAGGCGACAGTAAAGTCGGATTACGTCTAT AGCATAACTTGGGGATGTCACCACTATAGAAAATCGCTGATATGCTTATT TTGTCTGTCTCTCCCCTCCCGCCTGGTCCTACCTCCCACACAAACATAAT AACATCATAACATGACCACCAGCCGGTCGTAGGCAGCATTATAAACAATA AGTTGTGCGTTTGACCTACACGCGGAGGACAACGACAGAGGGAGTATCAT CAGCACCTTCTCGTATCCAGCAGCAGCAGCATTAGCAGCAGCACCAGCCG CCGCAACGGCAGCATCAGCAAGGGCAGCAGCGGGAGCAGCAGCAGCAGCA ACACATCATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGC ACTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTG GTGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGG TCCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCA ATGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACC GAGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGTCATGCAG CCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGCCGACATGG TGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGATGCACTTTAGAG GAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGACCAAGGCCGAAA TAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGACGAAGCCTCGG GAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGCAGCATTGGCTG GCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCTGTGATCGATCC CGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGCTGATGGCA TCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAGAAGTAAGC GTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGATAAGTGGATCGA GTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGCCCTTGCTGTCA AGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCCCCTATATTGTG GCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCATTCGGTCGTGCC TCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGATGTATGCTTATA GCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGCTTGATGGTTAT ATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTGGTGGATCT CCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCACACCACCC TCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGGTCGGTACCGAA TTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCCTGTGGCGG CTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATACCTCGACC CCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATCACAAGTAT CACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAACAAGGCCCTGCA GAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGGCGAAGCTGCTT TATCTATTGAATAACATAAAATTTTAACATTCGAAGATCGAAATTAACGA TGGCTAGATTGATTACATCCCTCTCCGTTCATGTACATGAAGACAATAAA GCAGAAAAAGTACTTTCGAAGCGCCCTTATCAAGCATTGTGCCAATATTT TGGACCCTTTTTTCTGCCTGCTAGTCCAAAG back to topprotein sequence of NO01G02740.1 >NO01G02740.1-protein ID=NO01G02740.1-protein|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp MRVNNYNPRRRVFQHYRPAASVFHIRNLSMVVIAGTILALYIMAFSYGPR KAFKGGDQGPGAQLNAARAGRKRGQSALVETEYNQNPPFHVAFSTSCSPF QDWQSLLVFLTADMVGQKGPLTRIASGCTLEEQAALETVYAKLDQGRNKF RIHFTPDFSKDEASGETYYFYNKPGGLQHWLASPASPPDDTVIAVIDPDF IFMRPLTAKVKADGIIFSGPIQAEDLIEEVSVGHPAAQYYGIGDKWIEFN LTYIAGEDSPALAVKSMSAWKHYSIGPPYIVAKADMVRIAQLWHSVVPRV YEGHPHLLAEMYAYSVAAAHLELPHLRLDGYMTSEAEGYGEAWPLVDLLT DESICSEDLSLHTTLLPTFLHYCQHYKVGTEFVYWKRDLDENFFSCGGSP LPLPNLEQVREYLDPISGPALSVNDRAYHKYHTFQYCQVVMKTNKALQKY KSLFCDVDDNGEAALSIE* back to topmRNA from alignment at chr1:710028..712419- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2392bp|location=Sequence derived from alignment at chr1:710028..712419- (Nannochloropsis oceanica) TGGGCTGATCGGTGCGCAAATCCTATGGGTGGGTGTAGTAGGGGGGCGTA
CTACCGGAATGAGGGGAGGGCGGGGACTTTTTATCAAGGAAGGCGCTCCG
TGCTGAGGGCTTGGGACGATGATGACGACAAAGATAAGGGGAAGGTGCTC
AGGTGCTGCGATTATCGAAGGTGTGGAGCGATGTCGCACGTGCTAAGAAA
AGTATGAGGCCTTCACTTCAGATGCTCGCCGGAGGACTCTCGCGAGCCCG
TCGTGAGCTCACAACGACGACGCCCAACGGCTTCCGGCCTCATGTTTTCT
TCAAATTTCATCTCGCACGACGATCGAAATGTGTACATTCGAAATGCTAT
CTCCCCAGGGGGAAGGGGGGAAGGCGACAGTAAAGTCGGATTACGTCTAT
AGCATAACTTGGGGATGTCACCACTATAGAAAATCGCTGATATGCTTATT
TTGTCTGTCTCTCCCCTCCCGCCTGGTCCTACCTCCCACACAAACATAAT
AACATCATAACATGACCACCAGCCGGTCGTAGGCAGCATTATAAACAATA
AGTTGTGCGTTTGACCTACACGCGGAGGACAACGACAGAGGGAGTATCAT
CAGCACCTTCTCGTATCCAGCAGCAGCAGCATTAGCAGCAGCACCAGCCG
CCGCAACGGCAGCATCAGCAAGGGCAGCAGCGGGAGCAGCAGCAGCAGCA
ACACATCATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGC
ACTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTG
GTGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGG
TCCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCA
ATGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACC
GAGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGGTATGTAG
AGCGATTGACCTTACCAATTTGAAAAAGAGCCAGTCGAGGATTCTGTGAG
CTCCCGCCATATCCCTCCAATCTGACTTGCCGCTTCTTCCCAATACTCCC
TAGTCATGCAGCCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAAC
CGCCGACATGGTGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGAT
GCACTTTAGAGGAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGAC
CAAGGCCGAAATAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGA
CGAAGCCTCGGGAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGC
AGCATTGGCTGGCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCT
GTGATCGATCCCGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAA
GGCTGATGGCATCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCG
AAGAAGTAAGCGTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGAT
AAGTGGATCGAGTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGC
CCTTGCTGTCAAGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCC
CCTATATTGTGGCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCAT
TCGGTCGTGCCTCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGAT
GTATGCTTATAGCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGC
TTGATGGTTATATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCT
CTGGTGGATCTCCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTT
GCACACCACCCTCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGG
TCGGTACCGAATTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTC
TCCTGTGGCGGCTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGA
ATACCTCGACCCCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGT
ATCACAAGTATCACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAAC
AAGGCCCTGCAGAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGG
CGAAGCTGCTTTATCTATTGAATAACATAAAATTTTAACATTCGAAGATC
GAAATTAACGATGGCTAGATTGATTACATCCCTCTCCGTTCATGTACATG
AAGACAATAAAGCAGAAAAAGTACTTTCGAAGCGCCCTTATCAAGCATTG
TGCCAATATTTTGGACCCTTTTTTCTGCCTGCTAGTCCAAAG back to topCoding sequence (CDS) from alignment at chr1:710028..712419- >NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr1:710028..712419- (Nannochloropsis oceanica) ATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGCACTACCG GCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTGGTGATTG CAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGGTCCCAGG AAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCAATGCAGC CAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACCGAGTACA ACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGTCATGCAGCCCCTTC CAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGCCGACATGGTGGGACA AAAGGGCCCACTGACGCGCATTGCTAGCGGATGCACTTTAGAGGAGCAAG CTGCCCTCGAGACCGTGTACGCCAAATTGGACCAAGGCCGAAATAAATTC CGTATACACTTCACGCCCGATTTTAGCAAGGACGAAGCCTCGGGAGAAAC GTATTACTTTTACAACAAGCCGGGCGGGTTGCAGCATTGGCTGGCAAGCC CAGCAAGCCCGCCGGACGACACGGTGATCGCTGTGATCGATCCCGATTTT ATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGCTGATGGCATCATATT CTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAGAAGTAAGCGTCGGGC ATCCGGCTGCGCAATATTACGGAATTGGGGATAAGTGGATCGAGTTTAAT TTGACTTATATCGCTGGTGAGGACAGCCCTGCCCTTGCTGTCAAGAGCAT GTCGGCTTGGAAACACTATTCTATTGGACCCCCCTATATTGTGGCTAAGG CTGATATGGTGCGAATTGCGCAGCTCTGGCATTCGGTCGTGCCTCGTGTT TACGAAGGCCATCCGCATTTGCTCGCCGAGATGTATGCTTATAGCGTGGC GGCCGCTCATTTGGAATTGCCTCATTTACGGCTTGATGGTTATATGACTA GTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTGGTGGATCTCCTCACC GATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCACACCACCCTCCTACC CACCTTTCTTCACTACTGCCAGCACTACAAGGTCGGTACCGAATTTGTCT ACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCCTGTGGCGGCTCCCCG CTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATACCTCGACCCCATCTC TGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATCACAAGTATCACACCT TCCAATATTGTCAGGTGGTCATGAAAACCAACAAGGCCCTGCAGAAGTAT AAGTCCCTCTTTTGTGACGTCGACGACAATGGCGAAGCTGCTTTATCTAT TGAATAA back to top
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