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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:677509..679118 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02620.1 vs.
Match: EWM29192.1 (peptidase [Nannochloropsis gaditana]) HSP 1 Score: 730.7 bits (1885), Expect = 3.000e-207 Identity = 341/480 (71.04%), Postives = 404/480 (84.17%), Query Frame = 0
Query: 1 MSTVHPELKELLGQTPSELTDKLEEQTLVLLQALIRNACVNRGDGECQEIKNIQTLAAFLDKYGLPYQIHHPSNRPNRPSLIAEYRGDGGEGPRLMLGPAHVDVVPVNEAAWKVPPFEGRVVNGELWGRGAIDMLNTVAAQAVAFACLATSRVPLRGTLLFCAVSDEEAGGADGAAFLMKDRVLRGVFKSDYCMTEFGGATLIDRNRRPTTTYFHVNGEKGMTSFEVLCKGTPGHGSLPLNGDNALVKAAGAIKCLADYWAPTIITPEWRNVISASDAPWIVRACLTSTWLARPFIRFLLWLKHPLGPIAHALTRLTISPNHLTGTLKSNVVPGSVAIEVDGRLMPGQDEAYLVKQVERALGKRRMASGEYEINIKHFFPATTSTIDTPLWRAMEKAAGVLVPGAKFVCGLLTGATDSRFFRRDCGAVAYGTSLFCPTLTMDRLVEMIHGNNERIPIESIGMSVQYFVLTSLYMLGGSVE 481
M +HP ++ELLG+ P E+ + LEE T+ LLQ+LIRNACVN GDG C+E+ NI+TLAAF DKYG+ YQ++HP +RPNRPSLIAEY G G GPR+MLGP HVDVVP NE AW VPPFE R+V GE+WGRG++DMLNTVAAQAVAFACLATSR+P+RGTL+FCAVSDEEAGGADGA FLM + LR +F++DYCMTEFGGATL DR RP+ TY+HV+GEKG + V+CKG PGHGSLP + DNALVKAA ++CLA+YW+PTIITPEWRN+++ASDAPWIVR CLTS W A IR LL L HPLG AHA TRLT+SPNHLTGT KSNVVPG+ +EVDGRLMPGQD+AYL++Q+ERALG+RRMASG+YEI I+HFFPATTS +DTPLW+AMEKA +LV G FV GLLTGATDSRFFR CGA+AYGTSLF P LT+D+L++ IHG+NERI + S+G+SVQYFVLT LYMLG + E
Sbjct: 1 MGLLHPAVRELLGEAP-EIGEDLEELTVSLLQSLIRNACVNCGDGSCEEVTNIRTLAAFFDKYGIKYQVYHPPHRPNRPSLIAEYHGGTGIGPRVMLGPGHVDVVPANEKAWDVPPFEARLVGGEVWGRGSLDMLNTVAAQAVAFACLATSRLPMRGTLIFCAVSDEEAGGADGAGFLMNEPKLRDIFRADYCMTEFGGATLPDRYNRPSRTYYHVSGEKGTATINVVCKGRPGHGSLPKSCDNALVKAAEVVRCLANYWSPTIITPEWRNIMAASDAPWIVRTCLTSAWFAPAIIRLLLLLGHPLGSAAHASTRLTLSPNHLTGTHKSNVVPGTAVVEVDGRLMPGQDKAYLIRQLERALGRRRMASGDYEIRIRHFFPATTSPVDTPLWKAMEKAGRMLVDGTTFVNGLLTGATDSRFFRHHCGAIAYGTSLFQPELTLDKLMKSIHGDNERISVASLGISVQYFVLTILYMLGAAEE 479
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGACCGCGTGC TCCGCGGCGTGTTCAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCC ACGCTCATCGATCGAAATAGGCGGCCTACTACCACCTACTTCCACGTTAA CGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCG GCCATGGCTCCCTCCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCA GGAGCAATCAAATGCCTGGCTGATTACTGGGCGCCCACCATAATCACACC GGAATGGCGCAATGTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTG CTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTG TGGCTAAAGCACCCGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTAC CATTAGCCCAAATCATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTG GCTCGGTAGCAATAGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAA GCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGC TTCAGGGGAGTACGAGATCAATATTAAACATTTTTTTCCCGCTACCACGA GCACGATCGACACGCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTA CTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGA CTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCAT TGTTTTGCCCAACCTTGACAATGGATAGATTGGTAGAGATGATTCATGGA AACAACGAGCGGATTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTT TGTCTTGACGAGTTTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAG AAGAAGAGGCCGCGAAAGACTGA back to topprotein sequence of NO01G02620.1 >NO01G02620.1-protein ID=NO01G02620.1-protein|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MSTVHPELKELLGQTPSELTDKLEEQTLVLLQALIRNACVNRGDGECQEI KNIQTLAAFLDKYGLPYQIHHPSNRPNRPSLIAEYRGDGGEGPRLMLGPA HVDVVPVNEAAWKVPPFEGRVVNGELWGRGAIDMLNTVAAQAVAFACLAT SRVPLRGTLLFCAVSDEEAGGADGAAFLMKDRVLRGVFKSDYCMTEFGGA TLIDRNRRPTTTYFHVNGEKGMTSFEVLCKGTPGHGSLPLNGDNALVKAA GAIKCLADYWAPTIITPEWRNVISASDAPWIVRACLTSTWLARPFIRFLL WLKHPLGPIAHALTRLTISPNHLTGTLKSNVVPGSVAIEVDGRLMPGQDE AYLVKQVERALGKRRMASGEYEINIKHFFPATTSTIDTPLWRAMEKAAGV LVPGAKFVCGLLTGATDSRFFRRDCGAVAYGTSLFCPTLTMDRLVEMIHG NNERIPIESIGMSVQYFVLTSLYMLGGSVEERGEEEAAKD* back to topmRNA from alignment at chr1:677509..679118+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr1:677509..679118+ (Nannochloropsis oceanica) ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC
AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC
TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC
AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA
TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG
AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG
CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT
CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA
TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT
TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA
GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGGTAAGAAAG
AGGGGATTGGAGGAAGGGAGAAGTAGTTTGGGAATGCGCTTGCTGCCGGG
CATTGAACTGTTTCCTTCTCCTCCTGGCTCATTAGCCTAAACCCTCACTC
CTATCGTCCTACCAAAAAAATAAACTAGACCGCGTGCTCCGCGGCGTGTT
CAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCCACGCTCATCGATC
GAAATAGGCGGCCTACTACCACCTACTTCCACGTTAACGGCGAGAAAGGA
ATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCGGCCATGGCTCCCT
CCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCAGGAGCAATCAAAT
GCCTGGCTGATTACTGGGCGCCCACCATAATCACACCGGAATGGCGCAAT
GTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTGCTTGCTTGACAAG
CACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTGTGGCTAAAGCACC
CGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTACCATTAGCCCAAAT
CATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTGGCTCGGTAGCAAT
AGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAAGCGTATTTAGTCA
AGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGCTTCAGGGGAGTAC
GAGATCAATATTAAACATTTTTTTCCCGCTACCACGAGCACGATCGACAC
GCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTACTTGTGCCTGGGG
CGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGACTCGAGGTTTTTC
CGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCATTGTTTTGCCCAAC
CTTGACAATGGATAGATTGGTAGAGATGATTCATGGAAACAACGAGCGGA
TTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTTTGTCTTGACGAGT
TTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAGAAGAAGAGGCCGC
GAAAGACTGA back to topCoding sequence (CDS) from alignment at chr1:677509..679118+ >NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr1:677509..679118+ (Nannochloropsis oceanica) ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGACCGCGTGC TCCGCGGCGTGTTCAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCC ACGCTCATCGATCGAAATAGGCGGCCTACTACCACCTACTTCCACGTTAA CGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCG GCCATGGCTCCCTCCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCA GGAGCAATCAAATGCCTGGCTGATTACTGGGCGCCCACCATAATCACACC GGAATGGCGCAATGTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTG CTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTG TGGCTAAAGCACCCGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTAC CATTAGCCCAAATCATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTG GCTCGGTAGCAATAGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAA GCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGC TTCAGGGGAGTACGAGATCAATATTAAACATTTTTTTCCCGCTACCACGA GCACGATCGACACGCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTA CTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGA CTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCAT TGTTTTGCCCAACCTTGACAATGGATAGATTGGTAGAGATGATTCATGGA AACAACGAGCGGATTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTT TGTCTTGACGAGTTTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAG AAGAAGAGGCCGCGAAAGACTGA back to top
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