NO01G02020.1, NO01G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02020.1
Unique NameNO01G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr1:513237..514906 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:513237..514906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02020.1 vs.
Match: EWM29193.1 (hypothetical protein Naga_100007g25 [Nannochloropsis gaditana])

HSP 1 Score: 308.5 bits (789), Expect = 2.400e-80
Identity = 149/223 (66.82%), Postives = 179/223 (80.27%), Query Frame = 0 
Query:  105 MTNVGQVDICNLTISISSLETATYKNPAWLPNYPKTQSFKSGTYFPFTAILPMNAGSSASYRYPTVDVKMGFYACDAALKALPEDKIVPPPGTRQSSVEAGDDLPESNPAAASGFGSKIMWSDLNTAIGAQSKCLITCLGNLNEQGDDCAAAAYVLHSGCLQKCPEAVLRWTINACTKAKCHSDQCALQTTSAGPCR----SSAAYLSSVMLGAVLYGGLWAL 324
            MTN GQVDICNLTISI+ L+TATYK PAWLP YPK +SFK+GTYFPFTAILP+NA S ASYRYPTVDV+ GF+ACDAAL+ALPED++VP PGT +SS+EA DD P SN   ++ FGSKI WS L T+ GAQ  CL TCL NL++QGDDCAAAAYVLHSGCLQ CP+ V +W ++ACTKA C + QCAL+T+++GP R     S AY   +MLG ++Y GLW+L
Sbjct:    1 MTNEGQVDICNLTISIAGLDTATYKTPAWLPTYPKDKSFKAGTYFPFTAILPINADSLASYRYPTVDVRTGFFACDAALRALPEDQVVPAPGTSRSSIEADDDFPGSNSGNSNNFGSKIRWSGLRTSAGAQMDCLGTCLANLHKQGDDCAAAAYVLHSGCLQNCPDTVPQWMVDACTKASCAAAQCALKTSASGPRRGGVGGSFAYFYYLMLGLIVYVGLWSL 223
The following BLAST results are available for this feature:
BLAST of NO01G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29193.12.400e-8066.82hypothetical protein Naga_100007g25 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02020NO01G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02020.1NO01G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02020.1.cds1NO01G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02020.1.cds2NO01G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02020.1 ID=NO01G02020.1|Name=NO01G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
CTCATCTTCTTGTGCTCCTGTGCAGCCTTTTGCCACGCAGCACACCCCAT
TCTCACTAGCTACTCATTGAAAACTACACACAGTAAAATCGTCGTTGGCA
TTTGTGCCTGGCCTGCCGCGACTTGCTCCGTCACCACCATCATGGGCCAT
ACTGCTGCTTCGAGCCACCGCTACCGTCTCCTATGCTCGCTTGCTCCGCT
TGCCCTCGTCTTGACAGCCCTCTTTCTTGGTTACCATACACTTGTCACAC
ATGCCCAGTCTTCCTCCATGTCTGGCGTCACGACCATGTCGTCGACGACC
ATCCAGGCTGTACCGGACAATTCCCAGCTCTCCTCCGCAGGCTCTCAAGC
TGGCTGCGACCACTACCGCAACGGGTACTTGGGCTTGGCCATGTGCGTGA
ACTTTTATGACGATACGGCAAACGACAAGGCATACGTGCAAGTGGTGGGC
TCCATGACCAACGTGGGTCAAGTAGACATCTGCAACCTGACAATTTCCAT
CTCCTCCCTCGAAACCGCCACATACAAAAATCCCGCCTGGCTTCCAAACT
ACCCCAAGACACAAAGCTTCAAATCCGGAACCTACTTCCCCTTCACGGCG
ATCTTGCCCATGAATGCCGGTTCGTCAGCTTCTTACCGTTACCCGACCGT
GGATGTGAAAATGGGTTTCTATGCCTGCGATGCTGCTCTCAAAGCCCTGC
CTGAAGACAAAATCGTGCCCCCCCCGGGAACGAGGCAATCGTCGGTCGAG
GCAGGTGACGACCTTCCCGAGTCAAATCCCGCGGCGGCGAGTGGTTTTGG
CTCTAAGATTATGTGGTCGGACTTAAATACTGCAATAGGCGCGCAGTCGA
AATGCTTGATCACATGTCTCGGCAATCTCAATGAACAAGGGGATGATTGT
GCGGCTGCTGCCTACGTTTTGCATTCGGGTTGCTTGCAGAAATGCCCTGA
GGCGGTCTTACGTTGGACAATTAACGCATGCACCAAGGCTAAATGCCACT
CCGACCAGTGCGCGCTTCAGACTACGTCGGCTGGGCCTTGTCGTAGTAGC
GCTGCGTATCTGTCCTCGGTGATGCTGGGTGCAGTGCTCTATGGCGGGTT
GTGGGCACTGGGGTAGGCGGGAACGCTTTGAAGGTCTTTCTGAGGGGGAT
GGAACTGATGGGAGTAGGGAAAAAGGGGTACAGGCCGCAAGATATCCGGG
AAACAAAAAGGGACCAATTAGAAATCTTGACGGCTCACTTTGCCAGCTTG
TCGCACGAAGCACGACTTAAACGTAATCGTAGATTGAGCATACGAAAGAA
AAGGTGAATGATTAAACGGC
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protein sequence of NO01G02020.1

>NO01G02020.1-protein ID=NO01G02020.1-protein|Name=NO01G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MGHTAASSHRYRLLCSLAPLALVLTALFLGYHTLVTHAQSSSMSGVTTMS
STTIQAVPDNSQLSSAGSQAGCDHYRNGYLGLAMCVNFYDDTANDKAYVQ
VVGSMTNVGQVDICNLTISISSLETATYKNPAWLPNYPKTQSFKSGTYFP
FTAILPMNAGSSASYRYPTVDVKMGFYACDAALKALPEDKIVPPPGTRQS
SVEAGDDLPESNPAAASGFGSKIMWSDLNTAIGAQSKCLITCLGNLNEQG
DDCAAAAYVLHSGCLQKCPEAVLRWTINACTKAKCHSDQCALQTTSAGPC
RSSAAYLSSVMLGAVLYGGLWALG*
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mRNA from alignment at chr1:513237..514906+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02020.1 ID=NO01G02020.1|Name=NO01G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at chr1:513237..514906+ (Nannochloropsis oceanica)
CTCATCTTCTTGTGCTCCTGTGCAGCCTTTTGCCACGCAGCACACCCCAT
TCTCACTAGCTACTCATTGAAAACTACACACAGTAAAATCGTCGTTGGCA
TTTGTGCCTGGCCTGCCGCGACTTGCTCCGTCACCACCATCATGGGCCAT
ACTGCTGCTTCGAGCCACCGCTACCGTCTCCTATGCTCGCTTGCTCCGCT
TGCCCTCGTCTTGACAGCCCTCTTTCTTGGTTACCATACACTTGTCACAC
ATGCCCAGTCTTCCTCCATGTCTGGCGTCACGACCATGTCGTCGACGACC
ATCCAGGCTGTACCGGACAATTCCCAGCTCTCCTCCGCAGGCTCTCAAGC
TGGCTGCGACCACTACCGCAACGGGTACTTGGGCTTGGCCATGTGCGTGA
ACTTTTATGACGATACGGCAAACGGTACATGTAGACAGCAGGGAACGATT
TCTTTTCAAAGCGGGGTTATTTTCTGTCTCGTGGCAGAGGTTGCAAGTCA
ATGCCCTTGCTTTTTCGATCCGTTGATTTCAAGCCCTGTGGAACGTAGCG
TTAGACCGGCATTTGTGCTGGTGGGCCGATCCCGTCGTGAAATAGACTTT
TAGAAACATCCTGCATTAAAGCATGAATCGTGTTTTTTGCACATTTGGTA
GGCACTTGTCTTTTCACAGGACCCCTTCTTCCTCTTTCTCACCGTGCGAA
ATCACCCCCCGTCTGATGCTCACATCCTCCCCCTTCTCTCCCTTCATCGA
TCTGGCTCACTCCAATACATACAGACAAGGCATACGTGCAAGTGGTGGGC
TCCATGACCAACGTGGGTCAAGTAGACATCTGCAACCTGACAATTTCCAT
CTCCTCCCTCGAAACCGCCACATACAAAAATCCCGCCTGGCTTCCAAACT
ACCCCAAGACACAAAGCTTCAAATCCGGAACCTACTTCCCCTTCACGGCG
ATCTTGCCCATGAATGCCGGTTCGTCAGCTTCTTACCGTTACCCGACCGT
GGATGTGAAAATGGGTTTCTATGCCTGCGATGCTGCTCTCAAAGCCCTGC
CTGAAGACAAAATCGTGCCCCCCCCGGGAACGAGGCAATCGTCGGTCGAG
GCAGGTGACGACCTTCCCGAGTCAAATCCCGCGGCGGCGAGTGGTTTTGG
CTCTAAGATTATGTGGTCGGACTTAAATACTGCAATAGGCGCGCAGTCGA
AATGCTTGATCACATGTCTCGGCAATCTCAATGAACAAGGGGATGATTGT
GCGGCTGCTGCCTACGTTTTGCATTCGGGTTGCTTGCAGAAATGCCCTGA
GGCGGTCTTACGTTGGACAATTAACGCATGCACCAAGGCTAAATGCCACT
CCGACCAGTGCGCGCTTCAGACTACGTCGGCTGGGCCTTGTCGTAGTAGC
GCTGCGTATCTGTCCTCGGTGATGCTGGGTGCAGTGCTCTATGGCGGGTT
GTGGGCACTGGGGTAGGCGGGAACGCTTTGAAGGTCTTTCTGAGGGGGAT
GGAACTGATGGGAGTAGGGAAAAAGGGGTACAGGCCGCAAGATATCCGGG
AAACAAAAAGGGACCAATTAGAAATCTTGACGGCTCACTTTGCCAGCTTG
TCGCACGAAGCACGACTTAAACGTAATCGTAGATTGAGCATACGAAAGAA
AAGGTGAATGATTAAACGGC
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Coding sequence (CDS) from alignment at chr1:513237..514906+

>NO01G02020.1 ID=NO01G02020.1|Name=NO01G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr1:513237..514906+ (Nannochloropsis oceanica)
ATGGGCCATACTGCTGCTTCGAGCCACCGCTACCGTCTCCTATGCTCGCT
TGCTCCGCTTGCCCTCGTCTTGACAGCCCTCTTTCTTGGTTACCATACAC
TTGTCACACATGCCCAGTCTTCCTCCATGTCTGGCGTCACGACCATGTCG
TCGACGACCATCCAGGCTGTACCGGACAATTCCCAGCTCTCCTCCGCAGG
CTCTCAAGCTGGCTGCGACCACTACCGCAACGGGTACTTGGGCTTGGCCA
TGTGCGTGAACTTTTATGACGATACGGCAAACGACAAGGCATACGTGCAA
GTGGTGGGCTCCATGACCAACGTGGGTCAAGTAGACATCTGCAACCTGAC
AATTTCCATCTCCTCCCTCGAAACCGCCACATACAAAAATCCCGCCTGGC
TTCCAAACTACCCCAAGACACAAAGCTTCAAATCCGGAACCTACTTCCCC
TTCACGGCGATCTTGCCCATGAATGCCGGTTCGTCAGCTTCTTACCGTTA
CCCGACCGTGGATGTGAAAATGGGTTTCTATGCCTGCGATGCTGCTCTCA
AAGCCCTGCCTGAAGACAAAATCGTGCCCCCCCCGGGAACGAGGCAATCG
TCGGTCGAGGCAGGTGACGACCTTCCCGAGTCAAATCCCGCGGCGGCGAG
TGGTTTTGGCTCTAAGATTATGTGGTCGGACTTAAATACTGCAATAGGCG
CGCAGTCGAAATGCTTGATCACATGTCTCGGCAATCTCAATGAACAAGGG
GATGATTGTGCGGCTGCTGCCTACGTTTTGCATTCGGGTTGCTTGCAGAA
ATGCCCTGAGGCGGTCTTACGTTGGACAATTAACGCATGCACCAAGGCTA
AATGCCACTCCGACCAGTGCGCGCTTCAGACTACGTCGGCTGGGCCTTGT
CGTAGTAGCGCTGCGTATCTGTCCTCGGTGATGCTGGGTGCAGTGCTCTA
TGGCGGGTTGTGGGCACTGGGGTAG
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Synonyms
Publications