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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:431598..434057 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01710.1 vs.
Match: EWM29103.1 (glutathione peroxidase [Nannochloropsis gaditana]) HSP 1 Score: 340.9 bits (873), Expect = 3.800e-90 Identity = 172/232 (74.14%), Postives = 198/232 (85.34%), Query Frame = 0
Query: 50 KMHLNRRCFIAVATSSLAFTSTPVAASVLVAARTRASASPAFFSNRAVSLLATQVSSSSSSSNRQFSTTKMATPSSLYDFTVKDASGQDFNLGEQLKDKKAVLVVNVASQCGFTPQYEGLQKLQDKYGPKGFTVLAFPCNQFGGQEPDAAPEVCSYVKNRFKTTFPIMDKVDVNGKNAAPIFNFLKEQQSGFITNSVKWNFSKWLVKDGKPIKRYGPQEKPEAFDKDIAEAL 282
+MH + RC A+ATSSLA +++ A R+ +SPAF S RAVSLLATQ+S+SSSS +R ST KM+ SSLYDFTVKDA+GQDFNLGE LKDKKAVLVVNVASQCGFTPQY+GLQ+LQDKYGPKGFTVLAFPCNQFGGQEPDAAP+VC + K+RFK TFPIMDKVDVNG NAAP+FNFLKEQQ GF+TN+VKWNFSKWL+KDGKPIKRYGPQEKPE+ +KD+ + L
Sbjct: 8 QMHFSGRCIAALATSSLALSNSISLA--------RSRSSPAFVSTRAVSLLATQLSASSSSHSRHLST-KMSAASSLYDFTVKDANGQDFNLGE-LKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLIKDGKPIKRYGPQEKPESIEKDVPQGL 229
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp GCCAGCCAGTCGATAGCCTGTTGTGGTGGATGGTTTGGTGTTGAGTACTA AAAGGCATCCGCAGGCGTGGTGGGACTACAACTACAAGGAAACAACTGTC CTCGCCGACGACGCTCTGTCTATGCTCGCACGCAGCCAAGACGGGCACCT TTGTACCTGCATTCCGTGGCACACTTTCTTCCTTTCTTTGCACGGCCACC AGCATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGC CGCATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGA CTCATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACA AAGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCT CGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCA CTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTG CTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTC CACGACCAAGATGGCCACCCCGTCTAGCTTGTACGATTTTACCGTTAAGG ATGCCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAG GCTGTGTTGGTAGTGAACGTTGCTTCTCAATGCGGTTTCACCCCCCAGTA CGAAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTG TTTTGGCCTTTCCTTGCAACCAATTTGGGGGGCAAGAGCCGGACGCTGCA CCGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCAT CATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATT TCCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTGGAAT TTTTCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGCCC CCAGGAGAAGCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCT AATTTTTGATTTGTGAGACGAGAAGAGAAGGTAATTATCACTATCCTTGG TTGCTGCGGCGGCTGCTGCTGCTATTTACACCAGTGGTTATGCTTCATTT GAGATCAAGCGTACAAACAAAAACATGCACACCGACAATGAGAGAGGGTA TCTTGAGTGATGTTAAAAAAAGGTGGAGTGTTTTTGTCGTTTTTCGGGGT TTGCGCAAGGATAAGTGAGAGTGTGTCTGCACGGTTCAAGCACAAAATGA TCAACGCCATCCCCACCACGGGCCGGCCTGTTGGATAAAAAGAAAAGAAA AGAGAAGGAAAGGGAATGCGAAAACGAAGCTCGAGAGAGAAGGAAAAACT CAGTGAAGTCTGGCAATGAGAAGCGAGGGATCGGAGCGAGAAATATGTTT GGGCACGTATTTTGAGATA back to topprotein sequence of NO01G01710.1 >NO01G01710.1-protein ID=NO01G01710.1-protein|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp MGPLAHSEWKRGADYAASQRRTNHAIAHAFRVTHAHVPPPFLHATTLHTK MHLNRRCFIAVATSSLAFTSTPVAASVLVAARTRASASPAFFSNRAVSLL ATQVSSSSSSSNRQFSTTKMATPSSLYDFTVKDASGQDFNLGEQLKDKKA VLVVNVASQCGFTPQYEGLQKLQDKYGPKGFTVLAFPCNQFGGQEPDAAP EVCSYVKNRFKTTFPIMDKVDVNGKNAAPIFNFLKEQQSGFITNSVKWNF SKWLVKDGKPIKRYGPQEKPEAFDKDIAEALT* back to topmRNA from alignment at chr1:431598..434057- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at chr1:431598..434057- (Nannochloropsis oceanica) GCCAGCCAGTCGATAGCCTGTTGTGGTGGATGGTTTGGTGTTGAGTACTA
AAAGGCATCCGCAGGCGTGGTGGGACTACAACTACAAGGAAACAACTGTC
CTCGCCGACGACGCTCTGTCTATGCTCGCACGCAGCCAAGACGGGCACCT
TTGTACCTGCATTCCGTGGCACACTTTCTTCCTTTCTTTGCACGGCCACC
AGCATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGC
CGCATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGA
CTCATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACA
AAGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCT
CGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCA
CTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTG
CTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTC
CACGACCAAGATGGCCACCCCGTAAGTTTCCCGGGGGGCGCAGAGGAGTT
GTGGGGTCTGGAGCCCAAGTTTCACAGGACTTGAATCCTTCACTTACGTT
CCGCTTTAAGCCTGGGTTTTCCATGCGTTCTTATCTTGTCTTTCCACTTT
TTTCTTTTTCGCGCACAGGTCTAGCTTGTACGATTTTACCGTTAAGGATG
CCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCT
GTGTTGGTAGTGAACGTTGCTTCTCAATGTATGTGGGCACCACGAAGGAA
GGAAGTAAGGGAGAGAGGAAGGGTTTTCCGGTGAATTGCTTTTTAGGGCT
TTTATAGATCCTTGTATGCTGTGCGGACGCGCTCGTAATTTGGTGGCTTT
TCGCGCAAGCTCTCTCATCATCCTGCTGCTTCCAACTCATCTCTCTCCCC
CGCACCGGACAATTGCCACACACGAACAGGCGGTTTCACCCCCCAGTACG
AAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTT
TTGGCCTTTCCTTGCAACCGTTAGTGACATGTGAAGGGTGGAGGGAGTGA
TGGAGGGGGATAAGAGTAATTGGAGAAGGAACTTGACGCACTTTCTTCTA
ACTTACCTTTTTTTTCATATACACACACGCATGCGCCCTTGCTTCTTCAT
CCTCCTCGCTCATCATCACAGAATTTGGGGTCAGTACTTTTATTTATTTG
CTTGTCTACACCTCCCTTTCTTTCTCCTTTCCCCCTAACGATCAACCTCA
CCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCGCT
CTCTTTAGGGGCAAGAGCCGGACGCTGCACCGGAGGTCTGCAGTTACGTC
AAAAACCGCTTCAAGACCACTTTTCCCATCATGGATAAGGTGGACGTGAA
CGGTAAAAACGCTGCGCCTATTTTTAATTTCCTGAAGGAGCAACAGTCTG
GTTTTATTACCAACTCTGTGAAGTGTACGTAAAGGGGGAGAAATTGGGAG
GGAAGGGCTCGTCTCAGTGTCTTGTCAAATAAGTTCCCTCCCCTTGGATG
AGCTGTAGACCTGCCGCGCCTTTTTTTTCTCCTCACCTGCCAACTTGCCC
ACCGCGACTCACAGGGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGC
CCATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTT
GGTGTAGTTTTGATGGTCATGCTTCAATGCTACTGACCCCCTGCAGCCTG
TCCTTTCTTGTCGTCTTCCATCTCCATCTCCATCCCTCCCTTTTTCCTTA
GTCTCCTCCTCCCGCCATCCTCCTCTTTCCGTGGCTGACCTTATTCTCAC
TTCTATCCTCCTTCTCATCCATGCGGGCGTCTGACAGGCCCCCAGGAGAA
GCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCTAATTTTTGA
TTTGTGAGACGAGAAGAGAAGGTAATTATCACTATCCTTGGTTGCTGCGG
CGGCTGCTGCTGCTATTTACACCAGTGGTTATGCTTCATTTGAGATCAAG
CGTACAAACAAAAACATGCACACCGACAATGAGAGAGGGTATCTTGAGTG
ATGTTAAAAAAAGGTGGAGTGTTTTTGTCGTTTTTCGGGGTTTGCGCAAG
GATAAGTGAGAGTGTGTCTGCACGGTTCAAGCACAAAATGATCAACGCCA
TCCCCACCACGGGCCGGCCTGTTGGATAAAAAGAAAAGAAAAGAGAAGGA
AAGGGAATGCGAAAACGAAGCTCGAGAGAGAAGGAAAAACTCAGTGAAGT
CTGGCAATGAGAAGCGAGGGATCGGAGCGAGAAATATGTTTGGGCACGTA
TTTTGAGATA back to topCoding sequence (CDS) from alignment at chr1:431598..434057- >NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr1:431598..434057- (Nannochloropsis oceanica) ATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGCCGC ATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGACTC ATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACAAAG ATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTCGC GTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCACTC GCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGCTT GCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCCAC GACCAAGATGGCCACCCCGTCTAGCTTGTACGATTTTACCGTTAAGGATG CCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCT GTGTTGGTAGTGAACGTTGCTTCTCAATGCGGTTTCACCCCCCAGTACGA AGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTTT TGGCCTTTCCTTGCAACCAATTTGGGGGGCAAGAGCCGGACGCTGCACCG GAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCATCAT GGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTTCC TGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTGGAATTTT TCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGCCCCCA GGAGAAGCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCTAA back to top
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