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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:351331..352676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01360.1 vs.
Match: EWM29073.1 (dehydroascorbate reductase [Nannochloropsis gaditana]) HSP 1 Score: 455.7 bits (1171), Expect = 1.300e-124 Identity = 235/332 (70.78%), Postives = 261/332 (78.61%), Query Frame = 0
Query: 20 VFIQALLLLLLVVPTDAFFSPVSPSSSSSSRGSTLTTTAARITTAVFSGVFEPTTIGPNTRTIGTKDSRSSYSSGRSTSTGRNPLFSTTALASSARSTTGFGDARGRGVRDGQGRIELLCKAGPEGEALGDCPFCHYVQMVLRYKGLRYRLVPLAPEDKPEWLMEGYGGKMPCLVHDEEAYTDSATITQYLEYFFPGEVPLTLEEEDPELEEEVKAATSGVFGAFARYVKNHDKAQDPPLQAALFEELGKADALLQKTGGPFLAGDRITLDDMALAPKLYHVKVGVAHFKNVIIPPDLDALAAYMRNMFDMEIFQESSYPPDIITWGWGNAR 352
V + ++ LLLLVV T AF P+ P SS+ R S++ + A T S +S G T R+ + S+ ALAS ARSTTGFGDARGRG RD QGRIELLCKAGP+G ALGDCPFCHYVQMVLRYKGLRYRL+PL PEDKPEWL+EGYGGKMPCLVHDEEAYTDS TITQYLEYFFPGE PLT+E+E+PEL EEVK ATSGVFGAFARY+KN DK QDPPLQAAL EEL K D LLQKT GPFLAG+RITLDDMALAPKLYH+KVGVAHFKNVIIPP L ALAAYM+++FDM+IFQESSYPPD+ITWGWGNAR
Sbjct: 7 VQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLADA-------------------TPQSITSRIEGSHT---RSSMSSSIALAS-ARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNAR 315
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp ATGAACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAG GGTGTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTG AAAAGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTA TGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTT CTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCAC GGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAG GATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCT GGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCAC GAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCC GCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACG ACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCG CATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATT GCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGG TATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGA AGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACA CGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAG GTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAA GGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACC ACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTA GGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGG GGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACG TGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTG GACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCA AGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCC GGGGTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAG GTAGGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTG TACGAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGAT back to topprotein sequence of NO01G01360.1 >NO01G01360.1-protein ID=NO01G01360.1-protein|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp MTATRAATTTNVTTRAFLRVFIQALLLLLLVVPTDAFFSPVSPSSSSSSR GSTLTTTAARITTAVFSGVFEPTTIGPNTRTIGTKDSRSSYSSGRSTSTG RNPLFSTTALASSARSTTGFGDARGRGVRDGQGRIELLCKAGPEGEALGD CPFCHYVQMVLRYKGLRYRLVPLAPEDKPEWLMEGYGGKMPCLVHDEEAY TDSATITQYLEYFFPGEVPLTLEEEDPELEEEVKAATSGVFGAFARYVKN HDKAQDPPLQAALFEELGKADALLQKTGGPFLAGDRITLDDMALAPKLYH VKVGVAHFKNVIIPPDLDALAAYMRNMFDMEIFQESSYPPDIITWGWGNA RGQ* back to topmRNA from alignment at chr1:351331..352676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at chr1:351331..352676- (Nannochloropsis oceanica) ATGAACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAG
GGTGTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTG
AAAAGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTA
TGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTT
CTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCAC
GGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAG
GATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCT
GGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCAC
GAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCC
GCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACG
ACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCG
CATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATT
GCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGG
TATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGA
AGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACA
CGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAG
GTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAA
GGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACC
ACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTA
GGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGG
GGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACG
TGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTG
GACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCA
AGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCC
GGGGTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAG
GTAGGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTG
TACGAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGAT back to topCoding sequence (CDS) from alignment at chr1:351331..352676- >NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr1:351331..352676- (Nannochloropsis oceanica) ATGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATT TCTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCA CGGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGA GGATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTC TGGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCA CGAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGC CGCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCAC GACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTC GCATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGAT TGCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACG GTATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGG AAGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTAC ACGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGA GGTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGA AGGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAAC CACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCT AGGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTG GGGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCAC GTGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTT GGACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCC AAGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCC CGGGGTCAGTAG back to top
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