NO01G00860.1, NO01G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00860.1
Unique NameNO01G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2340
Alignment locationchr1:221653..224072 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:221653..224072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00860.1 vs.
Match: EWM29018.1 (hypothetical protein Naga_101050g1 [Nannochloropsis gaditana])

HSP 1 Score: 305.1 bits (780), Expect = 6.400e-79
Identity = 160/250 (64.00%), Postives = 188/250 (75.20%), Query Frame = 0 
Query:  546 IINGALNVLEPQMREAWREEVRQALTPSGLALCFYAFVRRTYIVLPDIKRRVRAVKQQEINAKNSILSNVEAGALNLPTHELPVVIWARLPRGPYWPALAHRPHHAGLQKLLKAMGHRMIRFVGETGVYHLRTEVGLIEGLAPPAVGGNAASVLSFVDKDGKSTVDVLKKGRSLAKALKVAWELHRKFEEEGRVEVEGEEEVVVVPEGGVEEWLGDLREEE-------DEEEE---------GGGKRKMR 780
            ++NGAL    P +R AW EEVR A T +G ALC YAF+RR   +LP+IKRRV+ ++QQEI AK+SIL+NVEAGA+NLPT E   V+WARLPRGPYWPALAH PHHAGL+KLLK MGHRMIRF+GE GVYHLRTE+ L+ GL PPA GGNA SVL FVD +G+S+VDVLKKGRSLAK+LKVAW+LH KF +EGR E E EE    V  GGVEEWL DL +EE       + EEE         G GKR++R
Sbjct:    1 MLNGALQADRPSLRTAWEEEVRAAKTLAGFALCLYAFLRRARALLPEIKRRVKGIRQQEIAAKHSILANVEAGAVNLPTRETATVVWARLPRGPYWPALAHLPHHAGLRKLLKGMGHRMIRFIGEVGVYHLRTEMPLLPGLPPPATGGNAPSVLPFVDGEGRSSVDVLKKGRSLAKSLKVAWQLHEKFTQEGRKEEEEEE----VGPGGVEEWLMDLEDEEVSSDEATESEEEKGRGWGGGNGRGKRRLR 246
The following BLAST results are available for this feature:
BLAST of NO01G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29018.16.400e-7964.00hypothetical protein Naga_101050g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00860NO01G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00860.1NO01G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00860.1.cds1NO01G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00860.1.cds2NO01G00860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00860.1 ID=NO01G00860.1|Name=NO01G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp
ATGGAGCCGTTGGTGGCGGCGATGAGGAGAGGGGCGGGGTATCGGGACTT
GACGCGGGTGGGAGGGGAGGAGGAAGGGACTACGGCGAGTGCATCCTCGA
CGTCGTTGGTGTCACAGGGGAAGGAGCCGAAGGAGGGGCCGAAGGAGGAA
GTGGAGTCTTGGGGGATCGCCCAGATGGCTGTTGAGGGAGAAGAGGGTGC
AGCAGCAGGAGCAGGAACAGGGGCAGCAGCAGAGCTCAGCGGTGTCAAGG
AAGACGGCGGAGGGGGCATATCGATGGACATGGACGGGGGAGAAGGCGGG
AAGGAGGAAGGGGTTTGGCTGGAACGGAGCGATTCCGGGGGAAACAACAG
TAGTTCTACTGCTGAGGAGCCCAGGCGGTCGCAGAGGAGTAGGAAACCTG
CCTCCACATTTCAGATTGGGGCATTGGTTGAAGATGGAGGGGGAGTGGAG
GAGGGAGGGAGGACGAGGAGGGAAGGGGTGGTGAGCCGCTATCAAAGAGG
AGGAGGGAAGGAGATGATTGCCAACGTGCCGAGGCCGGCGTACCGCCTGG
CGTTTGAGGCGACTGCCGATGTGATGGGAAGCCTCAAAAACGAAATGATG
GATGTGGAGGGGAAAGTATGGGCTGAGGTGGAGGGCTCCACCCTCGCGGA
GATGATCCCGCTGGGGCAGGCGGAGGCGAGGGCGAGGTGGAGGGAGGGGG
TGAAGGCAGCAGGGGAATGGACAGAGCTTGCAGGACCCCTGGTGACGTTG
GAGGAGATGGTAGGACAGTGCTTGGGGGTGGGGATGAAGGTGGATGAGGC
GATTCGATTGTTCGATTTGTTGACGGAGGAGGAGCTGGCTAAGAAGATTG
AGGCGGGGAGGAAGGGGTTTGTGAGGCGGAAGAGGGGAAGACCTAAGGGT
GTGGGGGTGGGGACTCCATCGGGTCTTCCTGCTGGTGCTGCTGCTGCCGC
GGCTGCGATGGAAGGAGGAGAGGGAGAGAATGTGGAGGGGGAAGGAGGGG
ATGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGACGATATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCGGGGGGGGAT
CGAAAGCGAGCCGGCAAGTGGGAGGAACTCGGAGGAGGACGAGGACGAGG
AGGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAGGAGGACGAGGAG
GACGAGGACGAGGAAGAGGAAGGCGAAGAGGACGAGGAGGAGGAGGAAGG
CGAGGGTGGGAAGGAGGAAGGAGAGACCCTAGTTACGGGAGACGCTGGGA
GCGAAACCGCTTCGTCGTTGGCGACCGACAGAGTGCAGGAAGGGGTGGTT
GCGAAGAGGGGTGGAGGAAGAAAACCTAGAGTGTATCGACCTGTGAGTCG
AACGACGGCTTCAAATCCTAGCAGGCACCGAGGGAGGAGGAGCAGTGGGA
GTAATGCGGTGATGGGCCTGGTCGGTCTAAATGGCCTGCCCTTGAGGCCC
AAGAGGAGGAGGAGGAGGAGGAGGAGGAACAGGAAGGATGCTGACATGTA
CGAAACGGACGAGGAGGACTTTGAGAAGGAACGAAAGCCGAAACTCAAGA
CCCCTGAGGCGCTGGCAGCTGACGCCGAACTCGCCATCATCAACGGCGCA
TTGAACGTGCTGGAGCCGCAGATGCGCGAGGCCTGGAGGGAGGAAGTCCG
GCAAGCCCTCACCCCCTCAGGCCTTGCCCTCTGCTTCTACGCCTTTGTCC
GCCGAACTTATATCGTCCTCCCGGACATCAAGCGTCGCGTCCGGGCCGTC
AAACAACAAGAAATCAATGCCAAGAACTCCATCCTTTCCAACGTTGAGGC
CGGTGCCTTGAACCTCCCCACCCACGAGCTCCCTGTCGTCATCTGGGCTC
GCCTTCCCCGTGGTCCATATTGGCCGGCCCTGGCCCACCGTCCTCACCAC
GCAGGGCTTCAAAAATTGCTCAAGGCCATGGGGCATCGAATGATTAGGTT
TGTGGGTGAGACAGGCGTGTACCATCTCAGGACTGAAGTGGGGTTGATTG
AGGGTTTGGCCCCTCCCGCGGTGGGCGGAAATGCCGCGAGTGTCTTGTCG
TTCGTTGATAAGGATGGAAAGAGTACTGTGGACGTGTTAAAGAAGGGACG
GTCACTGGCCAAGGCGCTCAAGGTGGCGTGGGAATTGCATCGGAAGTTTG
AGGAGGAGGGAAGGGTGGAGGTGGAGGGGGAGGAAGAGGTGGTGGTGGTG
CCTGAGGGAGGGGTGGAGGAGTGGCTAGGGGATTTGAGGGAGGAAGAGGA
TGAAGAGGAGGAGGGGGGGGGGAAGAGGAAGATGAGGTGA
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protein sequence of NO01G00860.1

>NO01G00860.1-protein ID=NO01G00860.1-protein|Name=NO01G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=780bp
MEPLVAAMRRGAGYRDLTRVGGEEEGTTASASSTSLVSQGKEPKEGPKEE
VESWGIAQMAVEGEEGAAAGAGTGAAAELSGVKEDGGGGISMDMDGGEGG
KEEGVWLERSDSGGNNSSSTAEEPRRSQRSRKPASTFQIGALVEDGGGVE
EGGRTRREGVVSRYQRGGGKEMIANVPRPAYRLAFEATADVMGSLKNEMM
DVEGKVWAEVEGSTLAEMIPLGQAEARARWREGVKAAGEWTELAGPLVTL
EEMVGQCLGVGMKVDEAIRLFDLLTEEELAKKIEAGRKGFVRRKRGRPKG
VGVGTPSGLPAGAAAAAAAMEGGEGENVEGEGGDEEEEEEEGEEEEEEEE
EDDMLPSGPGGRARGGIESEPASGRNSEEDEDEEEDEDEDEDEDEEEDEE
DEDEEEEGEEDEEEEEGEGGKEEGETLVTGDAGSETASSLATDRVQEGVV
AKRGGGRKPRVYRPVSRTTASNPSRHRGRRSSGSNAVMGLVGLNGLPLRP
KRRRRRRRRNRKDADMYETDEEDFEKERKPKLKTPEALAADAELAIINGA
LNVLEPQMREAWREEVRQALTPSGLALCFYAFVRRTYIVLPDIKRRVRAV
KQQEINAKNSILSNVEAGALNLPTHELPVVIWARLPRGPYWPALAHRPHH
AGLQKLLKAMGHRMIRFVGETGVYHLRTEVGLIEGLAPPAVGGNAASVLS
FVDKDGKSTVDVLKKGRSLAKALKVAWELHRKFEEEGRVEVEGEEEVVVV
PEGGVEEWLGDLREEEDEEEEGGGKRKMR*
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mRNA from alignment at chr1:221653..224072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00860.1 ID=NO01G00860.1|Name=NO01G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr1:221653..224072+ (Nannochloropsis oceanica)
ATGGAGCCGTTGGTGGCGGCGATGAGGAGAGGGGCGGGGTATCGGGACTT
GACGCGGGTGGGAGGGGAGGAGGAAGGGACTACGGCGAGTGCATCCTCGA
CGTCGTTGGTGTCACAGGGGAAGGAGCCGAAGGAGGGGCCGAAGGAGGAA
GTGGAGTCTTGGGGGATCGCCCAGATGGCTGTTGAGGGAGAAGAGGGTGC
AGCAGCAGGAGCAGGAACAGGGGCAGCAGCAGAGCTCAGCGGTGTCAAGG
AAGACGGCGGAGGGGGCATATCGATGGACATGGACGGGGGAGAAGGCGGG
AAGGAGGAAGGGGTTTGGCTGGAACGGAGCGATTCCGGGGGAAACAACAG
TAGTTCTACTGCTGAGGAGCCCAGGCGGTCGCAGAGGAGTAGGAAACCTG
CCTCCACATTTCAGATTGGGGCATTGGTTGAAGATGGAGGGGGAGTGGAG
GAGGGAGGGAGGACGAGGAGGGAAGGGGTGGTGAGCCGCTATCAAAGAGG
AGGAGGGAAGGAGATGATTGCCAACGTGCCGAGGCCGGCGTACCGCCTGG
CGTTTGAGGCGACTGCCGATGTGATGGGAAGCCTCAAAAACGAAATGATG
GATGTGGAGGGGAAAGTATGGGCTGAGGTGGAGGGCTCCACCCTCGCGGA
GATGATCCCGCTGGGGCAGGCGGAGGCGAGGGCGAGGTGGAGGGAGGGGG
TGAAGGCAGCAGGGGAATGGACAGAGCTTGCAGGACCCCTGGTGACGTTG
GAGGAGATGGTAGGACAGTGCTTGGGGGTGGGGATGAAGGTGGATGAGGC
GATTCGATTGTTCGATTTGTTGACGGAGGAGGAGCTGGCTAAGAAGATTG
AGGCGGGGAGGAAGGGGTTTGTGAGGCGGAAGAGGGGAAGACCTAAGGGT
GTGGGGGTGGGGACTCCATCGGGTCTTCCTGCTGGTGCTGCTGCTGCCGC
GGCTGCGATGGGTGATGGTGGCGATGATGGGGCGGAGGAGGGAGCATCGA
TGGTCGTGGTGGAGGGGGGGGGGGGATTGAGGGGGTGGCAGAAGGAGGAG
AGGGAGAGAATGTGGAGGGGGAAGGAGGGGATGAGGAGGAGGAGGAGGAG
GAAGGGGAGGAGGAAGAGGAGGAGGAAGAGGAGGACGATATGTTGCCTTC
GGGGCCGGGGGGGAGAGCGCGGGGGGGGATCGAAAGCGAGCCGGCAAGTG
GGAGGAACTCGGAGGAGGACGAGGACGAGGAGGAGGACGAGGACGAGGAC
GAGGACGAGGACGAGGAGGAGGACGAGGAGGACGAGGACGAGGAAGAGGA
AGGCGAAGAGGACGAGGAGGAGGAGGAAGGCGAGGGTGGGAAGGAGGAAG
GAGAGACCCTAGTTACGGGAGACGCTGGGAGCGAAACCGCTTCGTCGTTG
GCGACCGACAGAGTGCAGGAAGGGGTGGTTGCGAAGAGGGGTGGAGGAAG
AAAACCTAGAGTGTATCGACCTGTGAGTCGAACGACGGCTTCAAATCCTA
GCAGGCACCGAGGGAGGAGGAGCAGTGGGAGTAATGCGGTGATGGGCCTG
GTCGGTCTAAATGGCCTGCCCTTGAGGCCCAAGAGGAGGAGGAGGAGGAG
GAGGAGGAACAGGAAGGATGCTGACATGTACGAAACGGACGAGGAGGACT
TTGAGAAGGAACGAAAGCCGAAACTCAAGACCCCTGAGGCGCTGGCAGCT
GACGCCGAACTCGCCATCATCAACGGCGCATTGAACGTGCTGGAGCCGCA
GATGCGCGAGGCCTGGAGGGAGGAAGTCCGGCAAGCCCTCACCCCCTCAG
GCCTTGCCCTCTGCTTCTACGCCTTTGTCCGCCGAACTTATATCGTCCTC
CCGGACATCAAGCGTCGCGTCCGGGCCGTCAAACAACAAGAAATCAATGC
CAAGAACTCCATCCTTTCCAACGTTGAGGCCGGTGCCTTGAACCTCCCCA
CCCACGAGCTCCCTGTCGTCATCTGGGCTCGCCTTCCCCGTGGTCCATAT
TGGCCGGCCCTGGCCCACCGTCCTCACCACGCAGGGCTTCAAAAATTGCT
CAAGGCCATGGGGCATCGAATGATTAGGTTTGTGGGTGAGACAGGCGTGT
ACCATCTCAGGACTGAAGTGGGGTTGATTGAGGGTTTGGCCCCTCCCGCG
GTGGGCGGAAATGCCGCGAGTGTCTTGTCGTTCGTTGATAAGGATGGAAA
GAGTACTGTGGACGTGTTAAAGAAGGGACGGTCACTGGCCAAGGCGCTCA
AGGTGGCGTGGGAATTGCATCGGAAGTTTGAGGAGGAGGGAAGGGTGGAG
GTGGAGGGGGAGGAAGAGGTGGTGGTGGTGCCTGAGGGAGGGGTGGAGGA
GTGGCTAGGGGATTTGAGGGAGGAAGAGGATGAAGAGGAGGAGGGGGGGG
GGAAGAGGAAGATGAGGTGA
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Coding sequence (CDS) from alignment at chr1:221653..224072+

>NO01G00860.1 ID=NO01G00860.1|Name=NO01G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at chr1:221653..224072+ (Nannochloropsis oceanica)
ATGGAGCCGTTGGTGGCGGCGATGAGGAGAGGGGCGGGGTATCGGGACTT
GACGCGGGTGGGAGGGGAGGAGGAAGGGACTACGGCGAGTGCATCCTCGA
CGTCGTTGGTGTCACAGGGGAAGGAGCCGAAGGAGGGGCCGAAGGAGGAA
GTGGAGTCTTGGGGGATCGCCCAGATGGCTGTTGAGGGAGAAGAGGGTGC
AGCAGCAGGAGCAGGAACAGGGGCAGCAGCAGAGCTCAGCGGTGTCAAGG
AAGACGGCGGAGGGGGCATATCGATGGACATGGACGGGGGAGAAGGCGGG
AAGGAGGAAGGGGTTTGGCTGGAACGGAGCGATTCCGGGGGAAACAACAG
TAGTTCTACTGCTGAGGAGCCCAGGCGGTCGCAGAGGAGTAGGAAACCTG
CCTCCACATTTCAGATTGGGGCATTGGTTGAAGATGGAGGGGGAGTGGAG
GAGGGAGGGAGGACGAGGAGGGAAGGGGTGGTGAGCCGCTATCAAAGAGG
AGGAGGGAAGGAGATGATTGCCAACGTGCCGAGGCCGGCGTACCGCCTGG
CGTTTGAGGCGACTGCCGATGTGATGGGAAGCCTCAAAAACGAAATGATG
GATGTGGAGGGGAAAGTATGGGCTGAGGTGGAGGGCTCCACCCTCGCGGA
GATGATCCCGCTGGGGCAGGCGGAGGCGAGGGCGAGGTGGAGGGAGGGGG
TGAAGGCAGCAGGGGAATGGACAGAGCTTGCAGGACCCCTGGTGACGTTG
GAGGAGATGGTAGGACAGTGCTTGGGGGTGGGGATGAAGGTGGATGAGGC
GATTCGATTGTTCGATTTGTTGACGGAGGAGGAGCTGGCTAAGAAGATTG
AGGCGGGGAGGAAGGGGTTTGTGAGGCGGAAGAGGGGAAGACCTAAGGGT
GTGGGGGTGGGGACTCCATCGGGTCTTCCTGCTGGTGCTGCTGCTGCCGC
GGCTGCGATGGAAGGAGGAGAGGGAGAGAATGTGGAGGGGGAAGGAGGGG
ATGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAAGAGGAGGAGGAAGAG
GAGGACGATATGTTGCCTTCGGGGCCGGGGGGGAGAGCGCGGGGGGGGAT
CGAAAGCGAGCCGGCAAGTGGGAGGAACTCGGAGGAGGACGAGGACGAGG
AGGAGGACGAGGACGAGGACGAGGACGAGGACGAGGAGGAGGACGAGGAG
GACGAGGACGAGGAAGAGGAAGGCGAAGAGGACGAGGAGGAGGAGGAAGG
CGAGGGTGGGAAGGAGGAAGGAGAGACCCTAGTTACGGGAGACGCTGGGA
GCGAAACCGCTTCGTCGTTGGCGACCGACAGAGTGCAGGAAGGGGTGGTT
GCGAAGAGGGGTGGAGGAAGAAAACCTAGAGTGTATCGACCTGTGAGTCG
AACGACGGCTTCAAATCCTAGCAGGCACCGAGGGAGGAGGAGCAGTGGGA
GTAATGCGGTGATGGGCCTGGTCGGTCTAAATGGCCTGCCCTTGAGGCCC
AAGAGGAGGAGGAGGAGGAGGAGGAGGAACAGGAAGGATGCTGACATGTA
CGAAACGGACGAGGAGGACTTTGAGAAGGAACGAAAGCCGAAACTCAAGA
CCCCTGAGGCGCTGGCAGCTGACGCCGAACTCGCCATCATCAACGGCGCA
TTGAACGTGCTGGAGCCGCAGATGCGCGAGGCCTGGAGGGAGGAAGTCCG
GCAAGCCCTCACCCCCTCAGGCCTTGCCCTCTGCTTCTACGCCTTTGTCC
GCCGAACTTATATCGTCCTCCCGGACATCAAGCGTCGCGTCCGGGCCGTC
AAACAACAAGAAATCAATGCCAAGAACTCCATCCTTTCCAACGTTGAGGC
CGGTGCCTTGAACCTCCCCACCCACGAGCTCCCTGTCGTCATCTGGGCTC
GCCTTCCCCGTGGTCCATATTGGCCGGCCCTGGCCCACCGTCCTCACCAC
GCAGGGCTTCAAAAATTGCTCAAGGCCATGGGGCATCGAATGATTAGGTT
TGTGGGTGAGACAGGCGTGTACCATCTCAGGACTGAAGTGGGGTTGATTG
AGGGTTTGGCCCCTCCCGCGGTGGGCGGAAATGCCGCGAGTGTCTTGTCG
TTCGTTGATAAGGATGGAAAGAGTACTGTGGACGTGTTAAAGAAGGGACG
GTCACTGGCCAAGGCGCTCAAGGTGGCGTGGGAATTGCATCGGAAGTTTG
AGGAGGAGGGAAGGGTGGAGGTGGAGGGGGAGGAAGAGGTGGTGGTGGTG
CCTGAGGGAGGGGTGGAGGAGTGGCTAGGGGATTTGAGGGAGGAAGAGGA
TGAAGAGGAGGAGGGGGGGGGGAAGAGGAAGATGAGGTGA
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Synonyms
Publications