NO01G00640.1, NO01G00640.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00640.1
Unique Name	NO01G00640.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	885
Alignment location	chr1:166879..167914 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:166879..167914 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO01G00640.1 vs.

BLAST of NO01G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00640	NO01G00640	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00640.1	NO01G00640.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00640.1.cds1	NO01G00640.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00640.1.cds2	NO01G00640.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:166879..167914-
coding sequence from alignment at chr1:166879..167914-

mRNA sequence

>NO01G00640.1 ID=NO01G00640.1|Name=NO01G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGCCACAATTGTGTAGGCCGGTTAAGGCCGAGGCCTCCTCCAGTGTCTC
GACAGAGTTGTTCAGCAGCAGAAGCACCAGCCAGTATAGTAGCACCACCA
CCACCACCAATCCCCCTCCTAGCGGCATCACGTTTGCGGCATTGACCCCG
CTAATAAGCTTTTCAATTTTACTAGGCGTCGTGATGGACGACGTAATCAT
CGATTTTTGCGAGAATGCCGAATGGAAGAAGGCCTATCTTGCCGCACATC
GGACGGCAACTCTGCCGACTAGCGCCTTTGTTCCTCTTGCTTGTGTCTTG
GGATTTGGTGGATTCGTGTACAATATTTATGTGAACAACTTGAGCAGCAG
CCGCAGTGGCTGCAAGATCCACAGTAGTGAAGGTAGTAGTATCAATGCAT
CTGGATGTACCAGTGAGGAGAAGGTGATAACCACCATGGATGGCAAGAAC
AAGAGGCGATGCAGCAGTAGACGGAAACCCAGCAGCAACACTAGCACCAA
GAATGCCGTTATCTACACTGATAGCACATCCCTGCATACTCCCATCTCTC
CTTCAATCCATGCCCCTCTTTCCAACACTCGCCAATGCAGTAGCCCTTCC
CCTCTTCTCGACTGGCGCATCCTTATTAGCACCGGTCTTGGACTCTTAAT
GTACGTACTCTTCGTCCACTTTCTCATCCCCAGCCAAGACTTCATCGCCG
GCGTCGTAGTGTCTGACAAGTCGCGTCTACGGAGCGCTGGACAGGTACAA
GAGGCTTTAAGGCTTGTGAAGGGAGGGCATCTGCTGTTGTTCGGTGCATT
GACTGGAATGGTTGCCTTGCAGGTCTCATTGCTAGGCCACGGCGGGCTAA
GTAAATGGAGGAATCGACAGGTAGAGAATGAATAG

protein sequence of NO01G00640.1

>NO01G00640.1-protein ID=NO01G00640.1-protein|Name=NO01G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MPQLCRPVKAEASSSVSTELFSSRSTSQYSSTTTTTNPPPSGITFAALTP
LISFSILLGVVMDDVIIDFCENAEWKKAYLAAHRTATLPTSAFVPLACVL
GFGGFVYNIYVNNLSSSRSGCKIHSSEGSSINASGCTSEEKVITTMDGKN
KRRCSSRRKPSSNTSTKNAVIYTDSTSLHTPISPSIHAPLSNTRQCSSPS
PLLDWRILISTGLGLLMYVLFVHFLIPSQDFIAGVVVSDKSRLRSAGQVQ
EALRLVKGGHLLLFGALTGMVALQVSLLGHGGLSKWRNRQVENE*

mRNA from alignment at chr1:166879..167914-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00640.1 ID=NO01G00640.1|Name=NO01G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp|location=Sequence derived from alignment at chr1:166879..167914- (Nannochloropsis oceanica)
ATGCCACAATTGTGTAGGCCGGTTAAGGCCGAGGCCTCCTCCAGTGTCTC
GACAGAGTTGTTCAGCAGCAGAAGCACCAGCCAGTATAGTAGCACCACCA
CCACCACCAATCCCCCTCCTAGCGGCATCACGTTTGCGGCATTGACCCCG
CTAATAAGCTTTTCAATTTTACTAGGCGTCGTGATGGACGACGTAATCAT
CGATTTTTGCGAGAATGCCGGTACGGAGCCTCTGGGATGGGGCATGAGTG
GGGTTTACCCTCTTCTAGATGTATACCCCCCCCCTCCTTTGTATCTATGA
CGACAAACGCTGACCATTTCGTCTAATTCTTTCCATTACCTCTATTCTTT
ACCTTTCTCCTCTCCTCTCAGAATGGAAGAAGGCCTATCTTGCCGCACAT
CGGACGGCAACTCTGCCGACTAGCGCCTTTGTTCCTCTTGCTTGTGTCTT
GGGATTTGGTGGATTCGTGTACAATATTTATGTGAACAACTTGAGCAGCA
GCCGCAGTGGCTGCAAGATCCACAGTAGTGAAGGTAGTAGTATCAATGCA
TCTGGATGTACCAGTGAGGAGAAGGTGATAACCACCATGGATGGCAAGAA
CAAGAGGCGATGCAGCAGTAGACGGAAACCCAGCAGCAACACTAGCACCA
AGAATGCCGTTATCTACACTGATAGCACATCCCTGCATACTCCCATCTCT
CCTTCAATCCATGCCCCTCTTTCCAACACTCGCCAATGCAGTAGCCCTTC
CCCTCTTCTCGACTGGCGCATCCTTATTAGCACCGGTCTTGGACTCTTAA
TGTACGTACTCTTCGTCCACTTTCTCATCCCCAGCCAAGACTTCATCGCC
GGCGTCGTAGTGTCTGACAAGTCGCGTCTACGGAGCGCTGGACAGGTACA
AGAGGCTTTAAGGCTTGTGAAGGGAGGGCATCTGCTGTTGTTCGGTGCAT
TGACTGGAATGGTTGCCTTGCAGGTCTCATTGCTAGGCCACGGCGGGCTA
AGTAAATGGAGGAATCGACAGGTAGAGAATGAATAG

Coding sequence (CDS) from alignment at chr1:166879..167914-

>NO01G00640.1 ID=NO01G00640.1|Name=NO01G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr1:166879..167914- (Nannochloropsis oceanica)
ATGCCACAATTGTGTAGGCCGGTTAAGGCCGAGGCCTCCTCCAGTGTCTC
GACAGAGTTGTTCAGCAGCAGAAGCACCAGCCAGTATAGTAGCACCACCA
CCACCACCAATCCCCCTCCTAGCGGCATCACGTTTGCGGCATTGACCCCG
CTAATAAGCTTTTCAATTTTACTAGGCGTCGTGATGGACGACGTAATCAT
CGATTTTTGCGAGAATGCCGAATGGAAGAAGGCCTATCTTGCCGCACATC
GGACGGCAACTCTGCCGACTAGCGCCTTTGTTCCTCTTGCTTGTGTCTTG
GGATTTGGTGGATTCGTGTACAATATTTATGTGAACAACTTGAGCAGCAG
CCGCAGTGGCTGCAAGATCCACAGTAGTGAAGGTAGTAGTATCAATGCAT
CTGGATGTACCAGTGAGGAGAAGGTGATAACCACCATGGATGGCAAGAAC
AAGAGGCGATGCAGCAGTAGACGGAAACCCAGCAGCAACACTAGCACCAA
GAATGCCGTTATCTACACTGATAGCACATCCCTGCATACTCCCATCTCTC
CTTCAATCCATGCCCCTCTTTCCAACACTCGCCAATGCAGTAGCCCTTCC
CCTCTTCTCGACTGGCGCATCCTTATTAGCACCGGTCTTGGACTCTTAAT
GTACGTACTCTTCGTCCACTTTCTCATCCCCAGCCAAGACTTCATCGCCG
GCGTCGTAGTGTCTGACAAGTCGCGTCTACGGAGCGCTGGACAGGTACAA
GAGGCTTTAAGGCTTGTGAAGGGAGGGCATCTGCTGTTGTTCGGTGCATT
GACTGGAATGGTTGCCTTGCAGGTCTCATTGCTAGGCCACGGCGGGCTAA
GTAAATGGAGGAATCGACAGGTAGAGAATGAATAG

Synonyms

Publications