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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:160574..161812 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00600.1 vs.
Match: BAW99689.1 (lysophosphatidate acyltransferase 1 [Nannochloropsis sp. NIES-2145]) HSP 1 Score: 607.4 bits (1565), Expect = 3.200e-170 Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 0
Query: 125 MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDLTLDVLLWMGVQVVMYTVLYALGARVLGRMTVR 413
MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDL LDVLLWMGVQVVMYTVLYALGARVLGRMTVR
Sbjct: 1 MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDLALDVLLWMGVQVVMYTVLYALGARVLGRMTVR 288
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA back to topprotein sequence of NO01G00600.1 >NO01G00600.1-protein ID=NO01G00600.1-protein|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp MGTPTTPSTPQRNGERLETRPLDTSSDKVNGGAGGSKTHEVSASISADLL GYFLAVLILLNFWSAAFLELVMYVVFAPMYPPIWHATRILGVRFGWLPPM IFLKWANIRLRVTGHAAAASGLGTMPSSSSSSWSSSWQRYIDLFTPGKLP RALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYM SECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSH EYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSL YNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEE KDRFLDDYYKGKGGVMVEGGKEEGPRWRDLTLDVLLWMGVQVVMYTVLYA LGARVLGRMTVR* back to topmRNA from alignment at chr1:160574..161812+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at chr1:160574..161812+ (Nannochloropsis oceanica) ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT
CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG
GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA
GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT
TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT
GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG
ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC
AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT
CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC
CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT
CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC
CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG
TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT
CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC
TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC
GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC
AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA
TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG
TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC
ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT
GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG
AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT
GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG
TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG
CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA back to topCoding sequence (CDS) from alignment at chr1:160574..161812+ >NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr1:160574..161812+ (Nannochloropsis oceanica) ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA back to top
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