NO01G00570.1, NO01G00570.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00570.1
Unique Name	NO01G00570.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1849
Alignment location	chr1:151243..154199 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:151243..154199 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G00570.1 vs.
Match: XP_012193837.1 (hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65]; KDO35500.1 hypothetical protein SPRG_00347 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 292.0 bits (746), Expect = 2.700e-75
Identity = 153/372 (41.13%), Postives = 209/372 (56.18%), Query Frame = 0

Query:    1 MLADKLEVREHTLYGFRCRGLFAAETIKAGEVVWSYKEGTEILRTYNKHHIDALPDSSAKSNIITYSYMLDDDLFGSTPTPEEDPSYFFNHSCAPNCWYSGDNCIVAMRDINRDEHVVYDYAMTETEGSLHAGLECRCGAGREGGKEGRGEEGMTCRGVLRFDDWR---------------------RASWAE-RREWRGGGRDGGGGEGGGKEKGLF----LTAAMRKGEVVLVFAGKVVGMEGLLAAG---RRNMELSLQINDTLWQIPSTRGP----ETSDFVNHSCDANSGMEDSTTVVAIRDMRAGEEVTIDYATVNSGINTSEGDNFQCRCQAKGCRGTVTSRDWMLPDVQEKYWPYFPPFVRRLI 340
            ML + +E+R+   YGF C+GLFA   +     VW++ + TE L T+ +H I A  D   +  +I +SYM+ DD F +T  PE DP+++FNH+C PNCW+ GD  IV  R + + E + YDYA TETE SLHAG+ C+CG+ +             CRG L+FDDWR                       SW + R E R   +            GLF        +  GE+VLVF+GKV+  +  L  G    R+ E+SLQ++  LWQIP+ +      ETSD++NHSCD   GM+DS TV+AIRD+  G+E+TIDY  VN G N    DNF C C +  CRG +T+ DW LP++Q +  PYF PFV+ LI
Sbjct:    1 MLPETVELRDFQFYGFACKGLFATADLPTNTPVWTWDKATEPLETWTRHEIMAHAD---RQKLINFSYMVGDDAFATTLEPERDPTWYFNHACDPNCWFEGDGQIVTRRPVKKGEQLCYDYACTETESSLHAGMMCQCGSDK-------------CRGKLKFDDWRSRAFIKANYGHVTDFIMKKHAENSWYDSRMELRHKSK---------SSLGLFCREDADCKIHAGEIVLVFSGKVIHKDQFLEPGAMTARDFEMSLQVHKDLWQIPAWKETGDKIETSDYINHSCDPTCGMQDSVTVIAIRDVHPGDEITIDYCMVNDGCNDEPSDNFMCNCGSANCRGEITTLDWQLPELQSRLGPYFAPFVKHLI 347

The following BLAST results are available for this feature:

BLAST of NO01G00570.1 vs.

BLAST of NO01G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_012193837.1	2.700e-75	41.13	hypothetical protein SPRG_00347 [Saprolegnia paras...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00570	NO01G00570	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00570.1	NO01G00570.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00570.1.cds1	NO01G00570.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds2	NO01G00570.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds3	NO01G00570.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds4	NO01G00570.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds5	NO01G00570.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds6	NO01G00570.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds7	NO01G00570.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00570.1.cds8	NO01G00570.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:151243..154199-
coding sequence from alignment at chr1:151243..154199-

mRNA sequence

>NO01G00570.1 ID=NO01G00570.1|Name=NO01G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp
ATGTTGGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTCAG
ATGTCGTGGGCTTTTTGCAGCGGAGACAATCAAGGCTGGGGAGGTTGTCT
GGTCCTACAAGGAAGGCACCGAGATTCTTCGGACGTACAACAAGCACCAC
ATCGACGCCCTTCCCGACTCATCCGCCAAATCCAATATTATCACCTACTC
GTACATGCTTGACGACGACCTCTTCGGCTCTACTCCTACTCCTGAAGAGG
ACCCTTCATACTTCTTCAACCACTCTTGCGCGCCAAACTGCTGGTACAGC
GGCGACAACTGCATCGTGGCCATGCGGGACATAAATAGGGACGAGCATGT
GGTGTATGATTATGCCATGACCGAGACCGAAGGGAGTTTGCACGCTGGGC
TGGAGTGCCGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGG
GAGGAAGGGATGACGTGCCGGGGGGTGCTCCGGTTCGACGACTGGAGGAG
GGCGAGCTGGGCGGAGAGGCGCGAATGGCGCGGGGGAGGGCGGGATGGTG
GAGGGGGGGAGGGGGGAGGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCG
ATGAGGAAGGGGGAGGTGGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAAT
GGAGGGACTGCTGGCAGCCGGGAGAAGGAATATGGAGCTGTCGTTGCAGA
TCAACGATACCCTGTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAGT
GATTTCGTCAACCACTCCTGCGACGCCAACTCGGGCATGGAAGACTCCAC
CACTGTGGTGGCCATCCGGGACATGCGGGCGGGGGAGGAGGTGACAATTG
ACTACGCTACTGTCAACAGCGGCATCAACACCTCGGAGGGCGACAACTTT
CAGTGCCGCTGCCAGGCCAAGGGATGTCGAGGCACGGTCACCAGCCGAGA
TTGGATGCTCCCCGACGTGCAAGAGAAGTACTGGCCGTACTTCCCGCCAT
TCGTGCGTCGGCTCATTTTGTCGCAAGCCGCGACGGCGAGTGGGAGGGCG
GGAGGGAGTGAAGGAGGGAGGGAGGGGTGGCGGGGCGAGACCAAGGGAAT
GATTCCTTCGAGCATGTCCGTCGTAGAGCTTTCTTAGGGCGGGAGGGCGG
GAGGGGGGAGGGCGGGACGGAGGGCGACTGCGGCTGTTTGCGTGGATGGT
GTGTCGTCGTTTTTCATGTCTCCCGGAGAGGGTGTGAAGGGGGAGGGCGG
GAGGGAGAGCGGGAGGAAGCGTGAGGGAGGGAGTGTAGTGGTGTTTTTTT
AAATGATTCGTTTTCGAGTGAGAGGATGTCAGGAATCGGAGAGAAAGCGA
TCGGGAATGGACGGAGGTGTGGGTCTAGGAAAATGGGTGAAGGAATGACA
AGGGATGGACCGATGTAGGGAGGGAAAGGAGAACCTTCACTTGAGGTGCT
TATAGTCACCAGCGGAGATCGCAGGATGAGGAGGGAAGGCAAGGGACGAC
AGTTCGATGACTAGTAAGACAGGGAGGAGGGGGGTGGGATGGGGAGTGAC
AGAACAGTGGAAGTAGACAGGAGGGGAAGGAGGGAGGGAGAGAAAGAGGG
AGGGGGAGACGAACTCACCAACCAGAGTACTGAATTTATTCTTTCTAGAT
GAGGTATAGTGGGAAGGGATCAGAGTGAGAGGGAAGGAAGCATGGCATGT
GTGTGAAGGCAGGGTAGTGGAAACCAATCACGATAGCGAGATGAAGCGCG
TTTATGGCCGTGCCCTGCCGTAGCTCGCTTTCATCTCTGTGTGTGTGTGA
GTGAGTGACTGGAAACAAACCGTTCCCTAGTCAACCTCCTCTTCGTCCT

protein sequence of NO01G00570.1

>NO01G00570.1-protein ID=NO01G00570.1-protein|Name=NO01G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MLADKLEVREHTLYGFRCRGLFAAETIKAGEVVWSYKEGTEILRTYNKHH
IDALPDSSAKSNIITYSYMLDDDLFGSTPTPEEDPSYFFNHSCAPNCWYS
GDNCIVAMRDINRDEHVVYDYAMTETEGSLHAGLECRCGAGREGGKEGRG
EEGMTCRGVLRFDDWRRASWAERREWRGGGRDGGGGEGGGKEKGLFLTAA
MRKGEVVLVFAGKVVGMEGLLAAGRRNMELSLQINDTLWQIPSTRGPETS
DFVNHSCDANSGMEDSTTVVAIRDMRAGEEVTIDYATVNSGINTSEGDNF
QCRCQAKGCRGTVTSRDWMLPDVQEKYWPYFPPFVRRLILSQAATASGRA
GGSEGGREGWRGETKGMIPSSMSVVELS*

mRNA from alignment at chr1:151243..154199-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00570.1 ID=NO01G00570.1|Name=NO01G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2957bp|location=Sequence derived from alignment at chr1:151243..154199- (Nannochloropsis oceanica)
ATGTTGGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTCAG
ATGTCGTGGGCTTTTTGCAGCGGAGACAATCAAGGTAAGGCGCGCGAAGG
CCTCCCAACCTCCAACCCCCTCGCTCTGCTCCTCTGAACCTCTCCGACAC
TTCCTTATGAAGTCAATCAGGACCATAATTATATTCTTCTAGCTGCCTTA
TCATCTCAAATGTACATGCATATTGCCTCTGCCAACACCCGTCCCTCCCT
CCCTCCTTCCCTCCCTCCAGGCTGGGGAGGTTGTCTGGTCCTACAAGGAA
GGCACCGAGATTCTTCGGACGTACAACAAGCACCACATCGACGCCCTTCC
CGACTCATCCGCCAAATCCAATATTATCACCTACTCGTACATGCTTGACG
ACGACCTCTTCGGCTCTACTCCTACTCCTGAAGGTCCCTCCCTCCCTCCC
TCCCTCCCTGCCTGCTGTTCTGTCCCCCTTCTCCCCTTGGTTTTTTTATT
TCATTTCCTGGTTCTAATCCATATTCTGGAACAAATTGCTGTGTTCCCCC
TCTCTCTTTTCCCCCCTCTTCCTCAGAGGACCCTTCATACTTCTTCAACC
ACTCTTGCGCGCCAAACTGCTGGTACAGCGGCGACAACTGCATCGTGGCC
ATGCGGGACATAAATAGGGACGAGCATGTGGTGTATGATTATGCCATGAC
CGAGACCGAAGGGAGTTTGCACGCTGGGCTGGAGTGCCGGTGCGGGGCCG
GGAGGGAGGGCGGGAAGGAGGGAAGGGGGGAGGAAGGGATGACGTGCCGG
GGGGTGCTCCGGTTCGACGACTGGAGGAGGGCGAGCTGGGCGGAGAGGTA
CAGTGGGCATGTGACGAGTTATGTGCAGAGAAAGATGGAGGAAAACAGCT
GGCACGATACCCGGGTGGTGTTGAGGTTCAAAAAAGGCGCGAATGGCGCG
GGGGAGGGCGGGATGGTGGAGGGGGGGAGGGGGGAGGGAAGGAAAAGGGC
TTGTTTCTGACGGCGGCGATGAGGAAGGGGGAGGTGGTGCTGGTGTTTGC
AGGGAAGGTGGTGGGAATGGAGGGACTGCTGGCAGCCGGGAGAAGGAATA
TGGAGCTGTCGTTGCAGGTACGCCTCGGCCTCCTTCCCTTCCTCCCTCCC
TCCCTCCTTCCCTCCCTTCCCTTTTTTTCACGACGATCGATAGCGTGCGC
CATCGCCACATGCAACCCACCTCAGTGCTACCGACACATACACATCCTCC
CTCCATCCCCAGATCAACGATACCCTGTGGCAGATTCCGTCCACCAGAGG
CCCCGAGACGAGTGATTTCGTCAACCACTCCTGCGACGCCAACTCGGGTA
AGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGGGGTTGGGAGGGAAGGAGG
GAGGGCAACGTCGACAAAGACAAAGGTGGGCTTCGTCCCGTGCCTTGGTT
CCTTTATTCTCATCCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CTTCCCTCCCTCCATCCCTCCCTCTCCCAGGCATGGAAGACTCCACCACT
GTGGTGGCCATCCGGGACATGCGGGCGGGGGAGGAGGTGACAATTGACTA
CGCTACTGTCAACAGCGGCATCAACACCTCGGAGGGCGACAACTTTCAGT
GCCGGTAGGTCGGTCGGGAAGCAACCCCTCCCCTCTTCCCTCCCTCCCTC
CGCTCTTTTCTGCCGTTAACGGTCTGGAACCTGTACCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCAACCTGTCCTGCTTCTCCTCCCATGCC
GTTCAACGCACCACGTCCATATAATCATGTTCCATGCCTTTCGTTCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGCTGCCAGGCCAAGGGATGTCGAG
GCACGGTCACCAGCCGAGATTGGATGCTCCCCGACGTGCAAGAGAAGTAA
GGAGGAAAAGAGGGGGGGAGGGGGGAGGCATTGACTCGACGAGTCGTATC
ACTGCTCATGCTTGAACTTACGCCCCGCCATCGGTCCCTTCCTCCCTCCC
TTCCTCCCTCCCTCTCTCCATCCCTCCCTCCCTAGGTACTGGCCGTACTT
CCCGCCATTCGTGCGTCGGCTCATTTTGTCGCAAGCCGCGACGGCGAGTG
GGAGGGCGGGAGGGAGTGAAGGAGGGAGGGAGGGGTGGCGGGGCGAGACC
AAGGGAATGATTCCTTCGAGCATGTCCGTCGTAGAGCTTTCTTAGGGCGG
GAGGGCGGGAGGGGGGAGGGCGGGACGGAGGGCGACTGCGGCTGTTTGCG
TGGATGGTGTGTCGTCGTTTTTCATGTCTCCCGGAGAGGGTGTGAAGGGG
GAGGGCGGGAGGGAGAGCGGGAGGAAGCGTGAGGGAGGGAGTGTAGTGGT
GTTTTTTTAAATGATTCGTTTTCGAGTGAGAGGATGTCAGGAATCGGAGA
GAAAGCGATCGGGAATGGACGGAGGTGTGGGTCTAGGAAAATGGGTGAAG
GAATGACAAGGGATGGACCGATGTAGGGAGGGAAAGGAGAACCTTCACTT
GAGGTGCTTATAGTCACCAGCGGAGATCGCAGGATGAGGAGGGAAGGCAA
GGGACGACAGTTCGATGACTAGTAAGACAGGGAGGAGGGGGGTGGGATGG
GGAGTGACAGAACAGTGGAAGTAGACAGGAGGGGAAGGAGGGAGGGAGAG
AAAGAGGGAGGGGGAGACGAACTCACCAACCAGAGTACTGAATTTATTCT
TTCTAGATGAGGTATAGTGGGAAGGGATCAGAGTGAGAGGGAAGGAAGCA
TGGCATGTGTGTGAAGGCAGGGTAGTGGAAACCAATCACGATAGCGAGAT
GAAGCGCGTTTATGGCCGTGCCCTGCCGTAGCTCGCTTTCATCTCTGTGT
GTGTGTGAGTGAGTGACTGGAAACAAACCGTTCCCTAGTCAACCTCCTCT
TCGTCCT

Coding sequence (CDS) from alignment at chr1:151243..154199-

>NO01G00570.1 ID=NO01G00570.1|Name=NO01G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr1:151243..154199- (Nannochloropsis oceanica)
ATGTTGGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTCAG
ATGTCGTGGGCTTTTTGCAGCGGAGACAATCAAGGCTGGGGAGGTTGTCT
GGTCCTACAAGGAAGGCACCGAGATTCTTCGGACGTACAACAAGCACCAC
ATCGACGCCCTTCCCGACTCATCCGCCAAATCCAATATTATCACCTACTC
GTACATGCTTGACGACGACCTCTTCGGCTCTACTCCTACTCCTGAAGAGG
ACCCTTCATACTTCTTCAACCACTCTTGCGCGCCAAACTGCTGGTACAGC
GGCGACAACTGCATCGTGGCCATGCGGGACATAAATAGGGACGAGCATGT
GGTGTATGATTATGCCATGACCGAGACCGAAGGGAGTTTGCACGCTGGGC
TGGAGTGCCGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGG
GAGGAAGGGATGACGTGCCGGGGGGTGCTCCGGTTCGACGACTGGAGGAG
GGCGAGCTGGGCGGAGAGGCGCGAATGGCGCGGGGGAGGGCGGGATGGTG
GAGGGGGGGAGGGGGGAGGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCG
ATGAGGAAGGGGGAGGTGGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAAT
GGAGGGACTGCTGGCAGCCGGGAGAAGGAATATGGAGCTGTCGTTGCAGA
TCAACGATACCCTGTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAGT
GATTTCGTCAACCACTCCTGCGACGCCAACTCGGGCATGGAAGACTCCAC
CACTGTGGTGGCCATCCGGGACATGCGGGCGGGGGAGGAGGTGACAATTG
ACTACGCTACTGTCAACAGCGGCATCAACACCTCGGAGGGCGACAACTTT
CAGTGCCGCTGCCAGGCCAAGGGATGTCGAGGCACGGTCACCAGCCGAGA
TTGGATGCTCCCCGACGTGCAAGAGAAGTACTGGCCGTACTTCCCGCCAT
TCGTGCGTCGGCTCATTTTGTCGCAAGCCGCGACGGCGAGTGGGAGGGCG
GGAGGGAGTGAAGGAGGGAGGGAGGGGTGGCGGGGCGAGACCAAGGGAAT
GATTCCTTCGAGCATGTCCGTCGTAGAGCTTTCTTAG

Synonyms

Publications