Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr1 genome chr1:43955..46168 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00260.1 vs.
Match: EWM28941.1 (protein kinase domain containing protein [Nannochloropsis gaditana])
HSP 1 Score: 555.4 bits (1430), Expect = 2.600e-154
Identity = 307/450 (68.22%), Postives = 341/450 (75.78%), Query Frame = 0
Query: 46 PSSFSSLPSFPSYPPSSS----FTTIQDFHVLAKLGLGAYGSVYQVVRKADHHTYAMKRVNLDGLDQRDLAMALNEIRLLASFRHPRIIRCYETFMDGPTHLCIVMEYCGFQDLARKIQRYRTRGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLDEEGNAKLGDMNVSKSLDDETGEVQSVMGTLPYMAPEIWEGKPYGFAADLYSLGCTLFELTTLVQPFDGPNPLYLRRAVLKRQFQARLDTDDFYSQELRDLILLRLLHPDPAQRLTADSLMRVPEVASRLDLVRHKLPKDLPASLPLTPAALLIHHLNSNGGNSSSSGSSNSKEEEGVDTGAETPSSRRIIVTATSTNYTSSSNNNNNDNDTTVNSLSLTLEELPFLLPHLLPGPSYP------TLSPPPSPPSPSATPNVNRSNSRSNNSIDTPSNATFLPSPLP 486
P+S SS P+ P+SS TTIQDFHVL+KLGLGAYGSVYQV+RKAD+HTYA+KRVNL+GLDQRDLAMALNEIRLL+SFRHPRIIRCYETF+DGPTHLCIVMEYCGFQDLARKIQRYR RGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLD+EGNAKLGD+NVSK LDDETGE+ +V GTLPYMAPEIWEGKPYGFA+DLYSLGCTLFELT LV PFDGP PL+LRRAVLKRQFQ+ L TD YS +LR +IL RLLH DPAQRLTADSLM++PEVASRL+LVRHKLP DLPA+LPLTP++LL+ HLN+ +SS K EG E + + N+ S SLTL LP LLP LLPGPSYP LSP S P S+ P +R + D P A LP P P
Sbjct: 9 PTSSSSF--LPALSPNSSSHNPITTIQDFHVLSKLGLGAYGSVYQVIRKADNHTYAIKRVNLEGLDQRDLAMALNEIRLLSSFRHPRIIRCYETFLDGPTHLCIVMEYCGFQDLARKIQRYRARGERVDERVVWVYLVQCLEALSALHALRVLHRDIKPANILLDKEGNAKLGDLNVSKCLDDETGEIHAVWGTLPYMAPEIWEGKPYGFASDLYSLGCTLFELTKLVPPFDGPTPLHLRRAVLKRQFQSDLATDTVYSHDLRHVILSRLLHHDPAQRLTADSLMQLPEVASRLELVRHKLPTDLPAALPLTPSSLLLKHLNTPIARNSSEVREEGKSLEGSPVQLEEGGA---------------DTTRGSTNEEAQGSASLTLGALPSLLPTLLPGPSYPPLSSAQALSPSASLPVSSSAPERSRETAH-----DHPRQACPLPPPFP 436
The following BLAST results are available for this feature:
BLAST of NO01G00260.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 2.60e-154 / Id = 68.22 Sequence EWM28941.1
Match Name E-value Identity Description
EWM28941.1 2.600e-154 68.22 protein kinase domain containing protein [Nannochl... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp back to top protein sequence of NO01G00260.1
>NO01G00260.1-protein ID=NO01G00260.1-protein|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp back to top mRNA from alignment at chr1:43955..46168+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at chr1:43955..46168+ (Nannochloropsis oceanica)ATGCAGCCCTTACAACGAAATCATCATACCACTTTACCGCTTACCACAGT
AATCTTGACGTGTGTAATCCACCCAAGCTCCTCCGCCCCCAAGGAGGGCC
TCAAGCTCAGTCGTATGGGAGACTCGACATCTGCCCCCTCCTCCTTCTCC
TCCTTGCCTTCCTTCCCCTCCTACCCCCCTTCTTCCTCTTTCACGACCAT
TCAAGACTTCCACGTCTTGGCCAAACTCGGTCTGGGTGCTTATGGAAGCG
TGTACCAAGTTGTGCGCAAGGCCGACCACCACACATACGCTATGAAGCGC
GTCAATCTTGATGGTCTGGATCAACGTGATCTGGCAATGGCTTTGAATGA
AATTCGGCTACTCGCCTCCTTTCGCCACCCGCGCATCATCCGCTGCTACG
AGACTTTCATGGACGGACCTACACACCTGTGCATTGTTATGGAGTACTGC
GGCTTCCAGGACCTGGCCCGCAAGATTCAGCGGTACCGGACGAGGGGGGA
GCGAGTGGACGAACGCGTGGTGTGGGTATACTTGGTGCAGTGCTTGGAGG
CCCTGTCAGCATTGCATGCCTTGCGTGTACTCCATCGTGACATCAAGCCC
GCGAACATTCTGCTGGACGAGGAGGGGAATGCCAAGCTGGGGGACATGAA
CGTGTCCAAGTCCCTGGACGACGAGACAGGCGAGGTGCAATCGGTCATGG
GTACGCTGCCCTACATGGCCCCTGAGATCTGGGAGGGCAAGCCATACGGA
TTCGCCGCCGATCTATACTCCCTCGGTTGCACGCTCTTCGAGCTCACGAC
CCTCGTACAGCCCTTCGATGGGCCCAACCCTCTTTACCTAAGGCGGGCCG
TGCTCAAGCGCCAGTTTCAGGCACGGCTGGACACGGATGACTTCTACTCT
CAGGAATTGCGAGACCTGATCCTCCTCCGCCTCCTACATCCTGATCCTGC
CCAGCGTCTCACCGCCGACAGCCTCATGCGGGTGCCCGAGGTAGCCTCTC
GGTTGGACTTGGTGCGGCACAAGCTCCCCAAGGACTTGCCCGCCTCCCTC
CCCCTCACCCCTGCTGCCTTGCTGATACATCATTTGAACAGCAATGGCGG
TAATAGCAGCAGCAGCGGTAGCAGCAATAGCAAAGAGGAAGAAGGTGTGG
ATACAGGCGCAGAAACACCAAGCAGCAGGAGGATCATTGTCACCGCCACT
AGCACCAACTACACCAGCAGCAGTAACAACAACAACAACGACAACGACAC
CACCGTGAACAGTCTGTCGCTGACGCTGGAAGAACTGCCTTTCCTCCTAC
CCCACCTCCTACCGGGGCCCTCTTACCCTACTCTTTCTCCTCCTCCTTCT
CCTCCTTCTCCCTCTGCCACACCGAACGTCAACAGAAGCAACAGCAGGAG
CAATAACAGCATTGACACTCCAAGCAATGCGACATTCCTCCCTTCTCCTC
TTCCGCCCTCCCTTTCCCTTTCCAGGCCTGAGGTGACGCGGGAAGACTCG
CTGACGGCCTTGCTCCGCTCGCCCTTCGCCACCTCCTCCTCCGGCACCAC
CAGCAGGACTACTATTGAGACAAAGCCGCCGGTGGGGGAGGGAGGAGGAG
ATGTGGTCACGACTCACCAGCGACACTGCAGGGAGGAAGGACAGACACTC
GTGCACTCTTTATCTTCTCCCGTGGCCTCTGCTCCCTGCTCCTCGTCGTC
CCCGGGAGCATCAGTCATGTCACCGCCCTCCGCAGCAGCGACGATGACCA
CCACCACCGACGGGGCAGCAGCGACAGCAGTCGCAGGCAAGCCCAGACAT
GGGGGCAAGCGCCCGAGGAAGAAACGGCCCGACTCCTTGTCTACCGCCAG
TATGACAACCGCGCCCGCCTCCTCCGCCTTGGAGAGCAGTGCCTCCCTCC
TGCATAGCCTCTCCCTCGATCAGACTCCAGACAATGTCTGCGAGGAAAGG
GAGGAAGGCGGGGAGGGAAATTCGAGGGAAAAGCTTAACAGCGAAGGGCA
AGTGCAATGGGAGGCCTTACCTACGCCGAATTCTTTCCCCCTCCCTCTCT
TGTCGCCCTGTCCCGCCAGCCCTCCCTTTGAGCAGCAGCTGATGGTCAGG
AGGGAGGGGGGAAAGGTTGAAGGAGGAGAGGGGGAGGAGGGAGGAGGAAA
TGAGGGGCTTATAAAGGGGGAGGAAAGAGAGGGGCTAGACGGATGTCTCA
CTGATAAAAAATAA back to top Coding sequence (CDS) from alignment at chr1:43955..46168+
>NO01G00260.1 ID=NO01G00260.1|Name=NO01G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at chr1:43955..46168+ (Nannochloropsis oceanica) back to top