NO01G00150.1, NO01G00150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00150.1
Unique NameNO01G00150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length612
Alignment locationchr1:23281..23892 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:23281..23892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00150.1 vs.
Match: EWM28943.1 (hypothetical protein Naga_100347g2 [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 4.200e-14
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 0 
Query:   21 AFLIPSCPYTCLAGPTRVTRTAGR------QGDHYHHSLLDRRRKPYSWSSLAATTSSSSSSARTTVEGQTPVLLRADISGLSREQAVAWVHAWCSRSLPTPPPSSPASSSSSPS-PTLPLPAPSADKAAVLQHMPRACRPSL 157
            AFL+PS   T +A P   T  + R      QG    H +  RRR+   ++ L    ++SSSSA  ++EGQ+P++ RADI+G+SR+QA+AW+HAWC+RSLP+PPPS+ +SSSS  S  T P    S    A    +    RP L
Sbjct:   27 AFLVPSSVVTRVASPLSSTPASIRFSQNEQQGYSSRHPV-KRRRESLLFTPLTLAATTSSSSASVSIEGQSPIVFRADIAGMSRKQALAWLHAWCTRSLPSPPPSASSSSSSPASLSTRPYGGQSGSTTAYAARL--QARPGL 166
The following BLAST results are available for this feature:
BLAST of NO01G00150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28943.14.200e-1442.66hypothetical protein Naga_100347g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00150NO01G00150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00150.1NO01G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00150.1.cds1NO01G00150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00150.1 ID=NO01G00150.1|Name=NO01G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
ATGCAACGCCTCGGCGGCCATTGGCTCACGATGTTCCTAATCTCCGTCCA
CGCAGCGACTGCCTTCCTTATCCCGTCTTGTCCTTACACGTGCCTCGCGG
GGCCCACCAGGGTTACCAGGACGGCCGGCCGCCAAGGCGACCATTATCAC
CACTCCTTGTTAGATAGAAGACGGAAGCCCTACTCTTGGTCCTCCCTCGC
CGCCACCACCTCCTCCTCCTCCTCCTCGGCACGCACGACAGTCGAGGGCC
AGACGCCTGTCCTTCTTCGTGCCGACATATCAGGGTTGTCGCGTGAGCAA
GCCGTCGCGTGGGTCCATGCTTGGTGCTCGCGATCCCTTCCTACTCCCCC
GCCTTCCTCTCCTGCCTCCTCCTCCTCCTCTCCCTCACCTACCTTGCCAC
TACCCGCCCCTTCGGCGGACAAAGCAGCAGTACTACAGCATATGCCGCGG
GCTTGCAGGCCCAGCCTGGGTTGCCCGTGGGTGGAACAAGTCTACCAATC
TCCCCCTCCCTCACAGCCCAGGGGGCCCGCGTCGTGTGTCAAGGCCTGGG
GCCCGCATTTTTGGACATCGAGGTACTTGGTGGCGGCGGAGGGGGGGGAG
GAGGGACGGTGA
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protein sequence of NO01G00150.1

>NO01G00150.1-protein ID=NO01G00150.1-protein|Name=NO01G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQRLGGHWLTMFLISVHAATAFLIPSCPYTCLAGPTRVTRTAGRQGDHYH
HSLLDRRRKPYSWSSLAATTSSSSSSARTTVEGQTPVLLRADISGLSREQ
AVAWVHAWCSRSLPTPPPSSPASSSSSPSPTLPLPAPSADKAAVLQHMPR
ACRPSLGCPWVEQVYQSPPPSQPRGPASCVKAWGPHFWTSRYLVAAEGGE
EGR*
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mRNA from alignment at chr1:23281..23892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00150.1 ID=NO01G00150.1|Name=NO01G00150.1|organism=Nannochloropsis oceanica|type=mRNA|length=612bp|location=Sequence derived from alignment at chr1:23281..23892- (Nannochloropsis oceanica)
ATGCAACGCCTCGGCGGCCATTGGCTCACGATGTTCCTAATCTCCGTCCA
CGCAGCGACTGCCTTCCTTATCCCGTCTTGTCCTTACACGTGCCTCGCGG
GGCCCACCAGGGTTACCAGGACGGCCGGCCGCCAAGGCGACCATTATCAC
CACTCCTTGTTAGATAGAAGACGGAAGCCCTACTCTTGGTCCTCCCTCGC
CGCCACCACCTCCTCCTCCTCCTCCTCGGCACGCACGACAGTCGAGGGCC
AGACGCCTGTCCTTCTTCGTGCCGACATATCAGGGTTGTCGCGTGAGCAA
GCCGTCGCGTGGGTCCATGCTTGGTGCTCGCGATCCCTTCCTACTCCCCC
GCCTTCCTCTCCTGCCTCCTCCTCCTCCTCTCCCTCACCTACCTTGCCAC
TACCCGCCCCTTCGGCGGACAAAGCAGCAGTACTACAGCATATGCCGCGG
GCTTGCAGGCCCAGCCTGGGTTGCCCGTGGGTGGAACAAGTCTACCAATC
TCCCCCTCCCTCACAGCCCAGGGGGCCCGCGTCGTGTGTCAAGGCCTGGG
GCCCGCATTTTTGGACATCGAGGTACTTGGTGGCGGCGGAGGGGGGGGAG
GAGGGACGGTGA
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Coding sequence (CDS) from alignment at chr1:23281..23892-

>NO01G00150.1 ID=NO01G00150.1|Name=NO01G00150.1|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr1:23281..23892- (Nannochloropsis oceanica)
ATGCAACGCCTCGGCGGCCATTGGCTCACGATGTTCCTAATCTCCGTCCA
CGCAGCGACTGCCTTCCTTATCCCGTCTTGTCCTTACACGTGCCTCGCGG
GGCCCACCAGGGTTACCAGGACGGCCGGCCGCCAAGGCGACCATTATCAC
CACTCCTTGTTAGATAGAAGACGGAAGCCCTACTCTTGGTCCTCCCTCGC
CGCCACCACCTCCTCCTCCTCCTCCTCGGCACGCACGACAGTCGAGGGCC
AGACGCCTGTCCTTCTTCGTGCCGACATATCAGGGTTGTCGCGTGAGCAA
GCCGTCGCGTGGGTCCATGCTTGGTGCTCGCGATCCCTTCCTACTCCCCC
GCCTTCCTCTCCTGCCTCCTCCTCCTCCTCTCCCTCACCTACCTTGCCAC
TACCCGCCCCTTCGGCGGACAAAGCAGCAGTACTACAGCATATGCCGCGG
GCTTGCAGGCCCAGCCTGGGTTGCCCGTGGGTGGAACAAGTCTACCAATC
TCCCCCTCCCTCACAGCCCAGGGGGCCCGCGTCGTGTGTCAAGGCCTGGG
GCCCGCATTTTTGGACATCGAGGTACTTGGTGGCGGCGGAGGGGGGGGAG
GAGGGACGGTGA
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Synonyms
Publications