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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:363..2838 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00010.2 vs.
Match: XP_009033836.1 (hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens]; EGB11473.1 hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens]) HSP 1 Score: 159.1 bits (401), Expect = 3.700e-35 Identity = 126/409 (30.81%), Postives = 201/409 (49.14%), Query Frame = 0
Query: 98 VRLNCAYYLPGLPLALLQQHYDSTFDSRLGSHAAYLTRIISATLILTLTLLCLPSVPASDAPTLLGLTSIMGAFSWLAHGTASTVVSIFPPAALVWLQSGFRMPEIYTLGMVSFLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFL 507
V L YY+ GLP++ LQQ YD+ +D + GS YL R L++ + +L +P + +L L + +G SW+ HGTA + S+ +A+ LQ+GFR PE+ + +L I + + +R+ F A L SG W L+ P QALL KDR + A IE+K V A+ A ++ S+ P + + A + ALS + + + + P L T+ SIF ++ AY S+ S + ++LYF RLF D GRP LP + QL + ++R+ ++F VYIF P +P SD+FV + +F++ SGYL ++SYEYAA+ A +++A ++MN FQ + F+AV+ + +
Sbjct: 941 VELYGIYYIMGLPVSFLQQRYDTYWDMKFGSSKMYLFRGQMNFLVILVVVLLMPMM-LLQRGAMLALMAALGVSSWMLHGTACMLASMVSTSAISALQTGFRTPELLAIVACYYLNIGSTASPASIRVFFILMATLAVSGLVAWTMLVLSPKIQALLADKDRCVDELDMTKAPLIEDKAKAPVSGSGATA--AFRRNSSAEDVSAAPGDDEAPGRLEGDEAAAETPADGDDDKPTFDALSGNDMEAIAKQVWPCRVALFWTMFGSIFTAAFFAYANSN---SGIDIEQVLYFTRLFGDLFGRPFTS-LPRPKCLQTGQQLATFAISRLIFSVIFFVYIFVPG-IPSSDLFVIADIGIFSVSSGYLGIISYEYAARDFKSTAA-KSYAATLMNTTFQISMFLAVLLGIII 1340
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00010.2 ID=NO01G00010.2|Name=NO01G00010.2|organism=Nannochloropsis oceanica|type=mRNA|length=2394bp
GAAATGTTTGCGTAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGT
GCGCAGCTTTATGCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGG
CAAAGCCCTTTCATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCC
GAATGAAGGTGAAGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCT
CTTGGCAACATTGCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGA
ACAACAAGAGTGAGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTT
AAATATACTCAAGCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAA
GCTACAAGCCTTTCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGA
GGGAGGAGGGAGGCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGA
AAAAACTTAACGCAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGA
GTGAAATCTGCCATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATC
CTTTCCTCTTCGCCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGT
GCATGACCACACCCAGTACCACACGCGGAAACCATAACGATAAAGTTGAA
CAGAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTAC
CCGCTCTTCATTTATAACGTCTTCTTCCCCCTACTCCCCAAGCACTCCTT
TGTCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGC
TTTCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTC
TCTTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGAC
TCAATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAA
CACTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCT
TACCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCC
TCCCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGC
ATTATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGT
GAGCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGA
TGCCAGAAATATATACACTTGGTATGGTCTCCTTTCTCCAAATAAATGCT
CACCCAAAAAACAGCGACTTGCGCCTTCTCTTCCATTTCACGGCAGCACT
GGTGTTTAGCGGAGCGGGAATATGGGTCTATCTCATGTCCCACCCTGCGA
CACAAGCGCTACTGCATTTGAAGGACCGAGGAGGACAGGTCAGCTTTCTT
CCAGTCGCGGGGCGGATTGAGGAGAAATGCGGAGAAAAGGTTCAGGAGGA
GGACGCTTCCCTTTTACATGCGTCCGCCATTGACAACCAAGTCGGACGTC
ACAGCAGCACCCCATCTACAAGCAAAACTACCACCTTAAATATCAGTAGC
AACAGCCGAGCGTGCAGCCGCACCACTCATTTATCATCCAATGCCGTCAT
CCAGGCCCTGTCAGAGGCGGAACGGGACTTTGTGGAAGCAACAATAGCGC
CCTATTGCTGGGTACTATCCATTACCATTGCCTCGTCCATCTTCCAATCG
TCACTCCTGGCCTATGTACAGAGCAGCCGCCCGCAGTCCAATTACTGTGT
CTGCGAGCTGCTCTATTTTGTGCGTCTCTTCGCCGACTTTCTTGGGCGTC
CTCTCGCTTGCCTTCTCCCCCACTATCTCCCTATATCGCAATCGTCACAA
CTTGTATCTGCTACGCTGGCCCGCATGTCCCTCTTGCTTCTATTTCTGGT
CTACATCTTCTTCCCCGCACACGTCCCGCAATCGGACGTGTTTGTGACCC
TTCTGGTCGCCGTCTTCGCCCTTTTGTCTGGCTACCTCGTCGTCCTCTCG
TACGAGTACGCGGCTAAGACGGTCGACCACTGCAAAGCCTATCAGGCGCA
TGCGGGCAGCGTCATGAACCTCCACTTCCAATCCGCATGCTTTGTGGCCG
TGATCTGCAGTCTTTTTCTTGTTGACTTGGGCTTTTCCTGAGCACCGTAG
CATGAAGAGAACTTGACGATGGTTTCTGTTGTCATTACCTGGATTGTAAA
GTGCCGGGACGAGAAAATAAAGTCCAAGGCATTGAGGTAGAAAAGGGACT
CTCTTCGGACTACTTGTAGATTTCTGTGACTGAAACGTGTAACATCTACA
TTGGCTCATCTTGGTATAATGGAGTAGAATGACGGCAGAGAAAGACAACA
AGAAGACTCCATCACTGAAAAGAAAGACGCCATTGCTTTTACTA back to topprotein sequence of NO01G00010.2 >NO01G00010.2-protein ID=NO01G00010.2-protein|Name=NO01G00010.2|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MTTPSTTRGNHNDKVEQSDTSRFMAINGIDSCTRSSFITSSSPYSPSTPL
STHNPSLTPTPTLGPCFLLLAFTYMSPWTVMGSLVSYFKEHHGPAFFVRL
NCAYYLPGLPLALLQQHYDSTFDSRLGSHAAYLTRIISATLILTLTLLCL
PSVPASDAPTLLGLTSIMGAFSWLAHGTASTVVSIFPPAALVWLQSGFRM
PEIYTLGMVSFLQINAHPKNSDLRLLFHFTAALVFSGAGIWVYLMSHPAT
QALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRH
SSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAP
YCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRP
LACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTL
LVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAV
ICSLFLVDLGFS* back to topmRNA from alignment at chr1:363..2838+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00010.2 ID=NO01G00010.2|Name=NO01G00010.2|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at chr1:363..2838+ (Nannochloropsis oceanica)
GAAATGTTTGCGTAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGT
GCGCAGCTTTATGCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGG
CAAAGCCCTTTCATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCC
GAATGAAGGTGAAGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCT
CTTGGCAACATTGCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGA
ACAACAAGAGTGAGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTT
AAATATACTCAAGCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAA
GCTACAAGCCTTTCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGA
GGGAGGAGGGAGGCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGA
AAAAACTTAACGCAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGA
GTGAAATCTGCCATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATC
CTTTCCTCTTCGCCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGT
GCATGACCACACCCAGTACCACACGCGGAAACCATAACGATAAAGTTGAA
CAGAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTAC
CCGCTCTTCATTTATAACGTCTTCTTCCCCCTACTCCCCAAGCACTCCTT
TGTCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGC
TTTCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTC
TCTTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGAC
TCAATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAA
CACTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCT
TACCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCC
TCCCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGC
ATTATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGT
GAGCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGA
TGCCAGAAATATATACACTTGGTAAGCGTGGGGACGAACTGGGCGGAAAA
TAGAACAAAAAATCATTTCATCCCCTCCTTGACGCTTCCCATTTTCCTCA
AAGGTATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGAC
TTGCGCCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGG
AATATGGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATT
TGAAGGACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATT
GAGGAGAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACA
TGCGTCCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTA
CAAGCAAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGC
CGCACCACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGC
GGAACGGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTAT
CCATTACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTA
CAGAGCAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTT
TGTGCGTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCC
CCCACTATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTG
GCCCGCATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGC
ACACGTCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCG
CCCTTTTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAG
ACGGTCGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAA
CCTCCACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTC
TTGTTGACTTGGGCTTTTCCTGAGCACCGTAGCATGAAGAGAACTTGACG
ATGGTTTCTGTTGTCATTACCTGGATTGTAAAGTGCCGGGACGAGAAAAT
AAAGTCCAAGGCATTGAGGTAGAAAAGGGACTCTCTTCGGACTACTTGTA
GATTTCTGTGACTGAAACGTGTAACATCTACATTGGCTCATCTTGGTATA
ATGGAGTAGAATGACGGCAGAGAAAGACAACAAGAAGACTCCATCACTGA
AAAGAAAGACGCCATTGCTTTTACTA back to topCoding sequence (CDS) from alignment at chr1:363..2838+ >NO01G00010.2 ID=NO01G00010.2|Name=NO01G00010.2|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr1:363..2838+ (Nannochloropsis oceanica)
ATGACCACACCCAGTACCACACGCGGAAACCATAACGATAAAGTTGAACA
GAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTACCC
GCTCTTCATTTATAACGTCTTCTTCCCCCTACTCCCCAAGCACTCCTTTG
TCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGCTT
TCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTCTC
TTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGACTC
AATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAACA
CTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCTTA
CCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCCTC
CCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGCAT
TATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGTGA
GCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGATG
CCAGAAATATATACACTTGGTATGGTCTCCTTTCTCCAAATAAATGCTCA
CCCAAAAAACAGCGACTTGCGCCTTCTCTTCCATTTCACGGCAGCACTGG
TGTTTAGCGGAGCGGGAATATGGGTCTATCTCATGTCCCACCCTGCGACA
CAAGCGCTACTGCATTTGAAGGACCGAGGAGGACAGGTCAGCTTTCTTCC
AGTCGCGGGGCGGATTGAGGAGAAATGCGGAGAAAAGGTTCAGGAGGAGG
ACGCTTCCCTTTTACATGCGTCCGCCATTGACAACCAAGTCGGACGTCAC
AGCAGCACCCCATCTACAAGCAAAACTACCACCTTAAATATCAGTAGCAA
CAGCCGAGCGTGCAGCCGCACCACTCATTTATCATCCAATGCCGTCATCC
AGGCCCTGTCAGAGGCGGAACGGGACTTTGTGGAAGCAACAATAGCGCCC
TATTGCTGGGTACTATCCATTACCATTGCCTCGTCCATCTTCCAATCGTC
ACTCCTGGCCTATGTACAGAGCAGCCGCCCGCAGTCCAATTACTGTGTCT
GCGAGCTGCTCTATTTTGTGCGTCTCTTCGCCGACTTTCTTGGGCGTCCT
CTCGCTTGCCTTCTCCCCCACTATCTCCCTATATCGCAATCGTCACAACT
TGTATCTGCTACGCTGGCCCGCATGTCCCTCTTGCTTCTATTTCTGGTCT
ACATCTTCTTCCCCGCACACGTCCCGCAATCGGACGTGTTTGTGACCCTT
CTGGTCGCCGTCTTCGCCCTTTTGTCTGGCTACCTCGTCGTCCTCTCGTA
CGAGTACGCGGCTAAGACGGTCGACCACTGCAAAGCCTATCAGGCGCATG
CGGGCAGCGTCATGAACCTCCACTTCCAATCCGCATGCTTTGTGGCCGTG
ATCTGCAGTCTTTTTCTTGTTGACTTGGGCTTTTCCTGA back to top
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