NO01G00010.1, NO01G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00010.1
Unique NameNO01G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2351
Alignment locationchr1:363..2838 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:363..2838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G00010.1 vs.
Match: XP_009033836.1 (hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens]; EGB11473.1 hypothetical protein AURANDRAFT_61938 [Aureococcus anophagefferens])

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-15
Identity = 85/284 (29.93%), Postives = 134/284 (47.18%), Query Frame = 0 
Query:   17 LRLLFHFTAALVFSGAGIWVYLMSHPATQALLHLKDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPSTSKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLSITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLPHYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFALLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFL 301
            +R+ F   A L  SG   W  L+  P  QALL  KDR      +  A  IE+K    V    A+   A   ++     S+ P   +         + A +            ALS  + + +   + P    L  T+  SIF ++  AY  S+   S   + ++LYF RLF D  GRP   L P    +    QL +  ++R+   ++F VYIF P  +P SD+FV   + +F++ SGYL ++SYEYAA+      A +++A ++MN  FQ + F+AV+  + +
Sbjct: 1065 IRVFFILMATLAVSGLVAWTMLVLSPKIQALLADKDRCVDELDMTKAPLIEDKAKAPVSGSGATA--AFRRNSSAEDVSAAPGDDEAPGRLEGDEAAAETPADGDDDKPTFDALSGNDMEAIAKQVWPCRVALFWTMFGSIFTAAFFAYANSN---SGIDIEQVLYFTRLFGDLFGRPFTSL-PRPKCLQTGQQLATFAISRLIFSVIFFVYIFVPG-IPSSDLFVIADIGIFSVSSGYLGIISYEYAARDFKSTAA-KSYAATLMNTTFQISMFLAVLLGIII 1340
The following BLAST results are available for this feature:
BLAST of NO01G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009033836.11.200e-1529.93hypothetical protein AURANDRAFT_61938 [Aureococcus... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00010NO01G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00010.1NO01G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00010.1.cds1NO01G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00010.1.cds2NO01G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00010.1 ID=NO01G00010.1|Name=NO01G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2351bp
GAAATGTTTGCGTAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGT
GCGCAGCTTTATGCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGG
CAAAGCCCTTTCATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCC
GAATGAAGGTGAAGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCT
CTTGGCAACATTGCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGA
ACAACAAGAGTGAGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTT
AAATATACTCAAGCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAA
GCTACAAGCCTTTCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGA
GGGAGGAGGGAGGCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGA
AAAAACTTAACGCAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGA
GTGAAATCTGCCATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATC
CTTTCCTCTTCGCCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGT
GCATGACCACACCCAGTACCACACGCGGAAACCATAACGATAAAGTTGAA
CAGAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTAC
CCGCTCTTCATTTATAACGTCTTCTTCCCCCTACTCCCCAAGCACTCCTT
TGTCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGC
TTTCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTC
TCTTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGAC
TCAATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAA
CACTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCT
TACCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCC
TCCCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGC
ATTATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGT
GAGCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGA
TGCCAGAAATATATACACTTGCGACTTGCGCCTTCTCTTCCATTTCACGG
CAGCACTGGTGTTTAGCGGAGCGGGAATATGGGTCTATCTCATGTCCCAC
CCTGCGACACAAGCGCTACTGCATTTGAAGGACCGAGGAGGACAGGTCAG
CTTTCTTCCAGTCGCGGGGCGGATTGAGGAGAAATGCGGAGAAAAGGTTC
AGGAGGAGGACGCTTCCCTTTTACATGCGTCCGCCATTGACAACCAAGTC
GGACGTCACAGCAGCACCCCATCTACAAGCAAAACTACCACCTTAAATAT
CAGTAGCAACAGCCGAGCGTGCAGCCGCACCACTCATTTATCATCCAATG
CCGTCATCCAGGCCCTGTCAGAGGCGGAACGGGACTTTGTGGAAGCAACA
ATAGCGCCCTATTGCTGGGTACTATCCATTACCATTGCCTCGTCCATCTT
CCAATCGTCACTCCTGGCCTATGTACAGAGCAGCCGCCCGCAGTCCAATT
ACTGTGTCTGCGAGCTGCTCTATTTTGTGCGTCTCTTCGCCGACTTTCTT
GGGCGTCCTCTCGCTTGCCTTCTCCCCCACTATCTCCCTATATCGCAATC
GTCACAACTTGTATCTGCTACGCTGGCCCGCATGTCCCTCTTGCTTCTAT
TTCTGGTCTACATCTTCTTCCCCGCACACGTCCCGCAATCGGACGTGTTT
GTGACCCTTCTGGTCGCCGTCTTCGCCCTTTTGTCTGGCTACCTCGTCGT
CCTCTCGTACGAGTACGCGGCTAAGACGGTCGACCACTGCAAAGCCTATC
AGGCGCATGCGGGCAGCGTCATGAACCTCCACTTCCAATCCGCATGCTTT
GTGGCCGTGATCTGCAGTCTTTTTCTTGTTGACTTGGGCTTTTCCTGAGC
ACCGTAGCATGAAGAGAACTTGACGATGGTTTCTGTTGTCATTACCTGGA
TTGTAAAGTGCCGGGACGAGAAAATAAAGTCCAAGGCATTGAGGTAGAAA
AGGGACTCTCTTCGGACTACTTGTAGATTTCTGTGACTGAAACGTGTAAC
ATCTACATTGGCTCATCTTGGTATAATGGAGTAGAATGACGGCAGAGAAA
GACAACAAGAAGACTCCATCACTGAAAAGAAAGACGCCATTGCTTTTACT
A
back to top

protein sequence of NO01G00010.1

>NO01G00010.1-protein ID=NO01G00010.1-protein|Name=NO01G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MVTIRFSDARNIYTCDLRLLFHFTAALVFSGAGIWVYLMSHPATQALLHL
KDRGGQVSFLPVAGRIEEKCGEKVQEEDASLLHASAIDNQVGRHSSTPST
SKTTTLNISSNSRACSRTTHLSSNAVIQALSEAERDFVEATIAPYCWVLS
ITIASSIFQSSLLAYVQSSRPQSNYCVCELLYFVRLFADFLGRPLACLLP
HYLPISQSSQLVSATLARMSLLLLFLVYIFFPAHVPQSDVFVTLLVAVFA
LLSGYLVVLSYEYAAKTVDHCKAYQAHAGSVMNLHFQSACFVAVICSLFL
VDLGFS*
back to top

mRNA from alignment at chr1:363..2838+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00010.1 ID=NO01G00010.1|Name=NO01G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2476bp|location=Sequence derived from alignment at chr1:363..2838+ (Nannochloropsis oceanica)
GAAATGTTTGCGTAAAAGTGAGAGATTTGTAAACAAATGGTGCCGGTGGT
GCGCAGCTTTATGCATAGACCAGGAACAGTATTGCTGCTAGTCACATGGG
CAAAGCCCTTTCATACAAGTCAACGACCCTACTGCCTTTTTGCCTCGGCC
GAATGAAGGTGAAGAGCCTGTCACACGGTGCCTCGATGCGGAGCCTCGCT
CTTGGCAACATTGCTTTCGAGCCGTTTCAACACCTCACACCAATGCCCGA
ACAACAAGAGTGAGCGCTGACAGCAGCACTCTTAAAGAGCTTTCCATCTT
AAATATACTCAAGCAACATACGTCAAAGAATTTTTTGGAGCTGGCAAAAA
GCTACAAGCCTTTCTCTCAGCAATTTTCGGTTTGTCTGGACAGAAGACGA
GGGAGGAGGGAGGCAAATTTCAGAGCCTCACGCTACTTATACGCCAGTGA
AAAAACTTAACGCAGGTCAAAGATCTGCATCAAATACCGCATCAACAGGA
GTGAAATCTGCCATTGGGTCGCCTGTCCTCCCAGCCATTCTGCAGTCATC
CTTTCCTCTTCGCCAAGGAGCCCAGACTTGCCCCTCGTCGCTGTCCAAGT
GCATGACCACACCCAGTACCACACGCGGAAACCATAACGATAAAGTTGAA
CAGAGTGATACGAGCAGGTTCATGGCAATAAATGGCATAGATAGCTGTAC
CCGCTCTTCATTTATAACGTCTTCTTCCCCCTACTCCCCAAGCACTCCTT
TGTCTACACACAATCCATCCCTTACCCCAACTCCGACCTTGGGTCCCTGC
TTTCTCCTGCTTGCCTTCACCTACATGTCGCCATGGACTGTTATGGGCTC
TCTTGTTTCTTATTTCAAAGAGCATCACGGCCCCGCATTTTTTGTTAGAC
TCAATTGTGCGTATTACCTCCCTGGCCTCCCACTCGCCCTCCTTCAACAA
CACTACGACTCGACCTTCGACTCACGCCTTGGCTCCCACGCCGCCTATCT
TACCCGTATCATTTCAGCCACCCTCATTTTGACGCTTACCCTGCTTTGCC
TCCCCTCGGTCCCGGCCTCCGACGCGCCAACTCTACTTGGGCTCACTAGC
ATTATGGGTGCCTTCTCCTGGTTGGCGCATGGCACAGCTTCCACAGTGGT
GAGCATATTTCCCCCTGCAGCCCTGGTATGGTTACAATCAGGTTTTCGGA
TGCCAGAAATATATACACTTGGTAAGCGTGGGGACGAACTGGGCGGAAAA
TAGAACAAAAAATCATTTCATCCCCTCCTTGACGCTTCCCATTTTCCTCA
AAGGTATGGTCTCCTTTCTCCAAATAAATGCTCACCCAAAAAACAGCGAC
TTGCGCCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGG
AATATGGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATT
TGAAGGACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATT
GAGGAGAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACA
TGCGTCCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTA
CAAGCAAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGC
CGCACCACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGC
GGAACGGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTAT
CCATTACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTA
CAGAGCAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTT
TGTGCGTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCC
CCCACTATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTG
GCCCGCATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGC
ACACGTCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCG
CCCTTTTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAG
ACGGTCGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAA
CCTCCACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTC
TTGTTGACTTGGGCTTTTCCTGAGCACCGTAGCATGAAGAGAACTTGACG
ATGGTTTCTGTTGTCATTACCTGGATTGTAAAGTGCCGGGACGAGAAAAT
AAAGTCCAAGGCATTGAGGTAGAAAAGGGACTCTCTTCGGACTACTTGTA
GATTTCTGTGACTGAAACGTGTAACATCTACATTGGCTCATCTTGGTATA
ATGGAGTAGAATGACGGCAGAGAAAGACAACAAGAAGACTCCATCACTGA
AAAGAAAGACGCCATTGCTTTTACTA
back to top

Coding sequence (CDS) from alignment at chr1:363..2838+

>NO01G00010.1 ID=NO01G00010.1|Name=NO01G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at chr1:363..2838+ (Nannochloropsis oceanica)
ATGGTTACAATCAGGTTTTCGGATGCCAGAAATATATACACTTGCGACTT
GCGCCTTCTCTTCCATTTCACGGCAGCACTGGTGTTTAGCGGAGCGGGAA
TATGGGTCTATCTCATGTCCCACCCTGCGACACAAGCGCTACTGCATTTG
AAGGACCGAGGAGGACAGGTCAGCTTTCTTCCAGTCGCGGGGCGGATTGA
GGAGAAATGCGGAGAAAAGGTTCAGGAGGAGGACGCTTCCCTTTTACATG
CGTCCGCCATTGACAACCAAGTCGGACGTCACAGCAGCACCCCATCTACA
AGCAAAACTACCACCTTAAATATCAGTAGCAACAGCCGAGCGTGCAGCCG
CACCACTCATTTATCATCCAATGCCGTCATCCAGGCCCTGTCAGAGGCGG
AACGGGACTTTGTGGAAGCAACAATAGCGCCCTATTGCTGGGTACTATCC
ATTACCATTGCCTCGTCCATCTTCCAATCGTCACTCCTGGCCTATGTACA
GAGCAGCCGCCCGCAGTCCAATTACTGTGTCTGCGAGCTGCTCTATTTTG
TGCGTCTCTTCGCCGACTTTCTTGGGCGTCCTCTCGCTTGCCTTCTCCCC
CACTATCTCCCTATATCGCAATCGTCACAACTTGTATCTGCTACGCTGGC
CCGCATGTCCCTCTTGCTTCTATTTCTGGTCTACATCTTCTTCCCCGCAC
ACGTCCCGCAATCGGACGTGTTTGTGACCCTTCTGGTCGCCGTCTTCGCC
CTTTTGTCTGGCTACCTCGTCGTCCTCTCGTACGAGTACGCGGCTAAGAC
GGTCGACCACTGCAAAGCCTATCAGGCGCATGCGGGCAGCGTCATGAACC
TCCACTTCCAATCCGCATGCTTTGTGGCCGTGATCTGCAGTCTTTTTCTT
GTTGACTTGGGCTTTTCCTGA
back to top
Synonyms
Publications