jgi.p|Nanoce1779_2|667914, gene_940 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667914
Unique Namegene_940
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:803893..809955 -

Link to JBrowse

Properties
Property NameValue
TranscriptId668000
ProteinId667914
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:803893..809955 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03520NO02G03520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667914mRNA_940-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667914mRNA_940Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|667914

>mRNA_940-protein ID=mRNA_940-protein|Name=jgi.p|Nanoce1779_2|667914|organism=Nannochloropsis oceanica|type=polypeptide|length=1175bp
MTFDSKEVIIDGRGHLLGRLASIVAKELLSGQKVVVVRCEELMISGGLTR
NHTRYMQFLRKRTNTNPTKGPFHYRAPSRILWRTIRGMVPHKTFRGAQAL
ERLTTFEGIPAPFDTKKRVVVPQALKILRLKPGRRFCTLGKLAHEVGWGH
RDLVARLESKRKIRAEAFYQQKKAGTAAKALAERKAASDLAAVNSVLAGF
GYHVAPTPTAERIAAPVKKANNMAIDGTSGRVTQRKRKRPLPASDSSKST
TTNSAPQRGGTCPKSASLSSSATTNSLSGNKKRSRSNTTHNGMSGEGDEM
AAEDLDVDEEDGGRGAAACLESSLTSTAGGHGATGKTFTRAIDKPRARSE
IVRQVEKLVSNMFKELDVLLRAENINRRVMYRWSGAERSSSGAIGEGKAS
YCTWGRELIKQYIEDAIELVRTSLTMGDWDNSVEAARRLTLQYLGKAADR
FIIENEPVLHAEVMNTLGNLWFALLPYMPPPQRHQFRRLVARIRKTNISS
RSSRNNKVGNASCTSTAAACTGILASGGAWGAVNHSLAPAATCVDPQGQQ
LELQHPEPPPPPQQQQHLYQHQPEQQQPQQQRQQPQQQQHHSGSLAVSFR
CALQFAKLDLSPEALAVQGPHETQNKLAALLVSDVYECDAYICLWKVSEV
LAGLKDFQVLCQEFRLKALDAEMWRCMLLEEQESRQRGGGGSDDEDDEDD
YDSEEEEEEDEEGGKAEVVDNKDRLSISKLATIPGIMATLPKKTAAAPSS
RFSNIRRSSDREGQESGSRVAGAERWRTKAALEDGEVDQYMDFMSLHQHE
YRRVVTPDFLFRVRTFLEAFETTPSALQDGRDGIRGTNIADAAAAPSLSP
SSLLFVRSRPFLYRVATIIPTGQLDGYLDLLSSKIGFQATLLLLEPLLMD
EQEIFSTGRVTQALEWAINHEEGRYLAVFSRLILPRIQSRTQLERIACHA
VVYGQASLAVIDRALARVPRKNYEGMALNLCRRAVQNWGPGTRGVHLMVL
RALQGMPSLGLYLKCRGCFSDPLPTLVRPLLHQLDPMGELSIGIRLVEGV
VQSAVKSIVASLEASSEGPERLAKAKRWMDFAFAGVRGGQFPPCVLERLF
SNQIFLLAALGPPSADISCVEAVAGCFSKLAELSRTHSTAIAGPVQAIMN
TYTTHPQKHLIWKAANEKGIEVAA*
back to top
Synonyms
Publications