jgi.p|Nanoce1779_2|536626, gene_928 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|536626
Unique Namegene_928
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:772699..776711 +

Link to JBrowse

Properties
Property NameValue
TranscriptId536712
ProteinId536626
Product nameDNA-directed RNA polymerase III subunit RPC2
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:772699..776711 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00340625'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03400NO02G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536626mRNA_928-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|536626mRNA_928Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|536626

>mRNA_928-protein ID=mRNA_928-protein|Name=jgi.p|Nanoce1779_2|536626|organism=Nannochloropsis oceanica|type=polypeptide|length=1206bp
MAPPSAGGSISNNSTTTHPTMQSPVALATERAFDDAAKPVTDVADKWKLL
PHFLQLRGLMRQHIDSFNYFVNREIKDIVNAASNRELRSEADSKFWLRYT
DVQVGEPSVDDDAYVSSRITPFQCRLRDCTYSAPITVDVRYTRGRQIVVK
RGVMIGRIPIMLRSCKCILTGLDEAKLAEKKECPYDPGGYFVVKGVERVI
LMQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIFIKNGSKVYLKN
NLLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPEMLDAFAPSLEEPYHLGI
CTQSQALRYIGAKIRTTTQNRGPGPSGMGFAYYRRASSPEEEAREVLASV
ILNHVPVVNFDFRTKCIFVCHVIRRVLLTHRDRSQLDDKDYYGNKRLELA
GQLLSLLFEDLFKRLNVQLKKQADQGLSKPNRTQSFDVIKCIRTDTITNG
FIQAIATGNWKLQRFRMDRQGVTQVLTRLSYISCLGMMTRINSQFEKTRK
VSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEESDPIREL
CFDLGVEDVTLLSGAEINASSNYLIFLNGLIVGCHWRPLRFVRLLRLLRR
KGLVAEFVSVYLHEVQRAVYIATDGGRVCRPLLVCERGIPRLTHMMMRQL
SAGLLTLAELIRSGVVEYVDVNEENNCLIALAQTDLTAKHTHVEIDPLTV
LGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGTVALNQYERLDSLLYAMVY
PQKPLVTTRTLDLINFNELPGGQNAVVAVMSYSGYDIEDAVVLNKASLDR
GFGRCLILRKHQTSLRKYANGAADNLRGPPEDTTAAAAAAAAAAAAAAAT
VTLAGGGGEGGVAHYPARRDPRLRRFEALDRDGICQVGERLENGSVMINK
ESPVSVADLNMGSGAEPTPCKPTPLSYKGPAPSHVDQVLITSNEGGDLLV
KVSLRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDLPFNDDGICPDLIMNP
HGFPSRMTVGKLIEFVAGKAGVMIGRQAYGTAFGEEFGSADRVAACSATL
VQHGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARG
PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFT
ATVCENCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKL
KLMEF*
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Synonyms
Publications