jgi.p|Nanoce1779_2|533220, gene_9247 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533220
Unique Namegene_9247
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_33:95510..97781 -

Link to JBrowse

Properties
Property NameValue
TranscriptId533306
ProteinId533220
Product nameProtein phosphatase 2C (PP2C)-like domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:95510..97781 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
GO:0004723calcium-dependent protein serine/threonine phosphatase activity
GO:0004724magnesium-dependent protein serine/threonine phosphatase activity
GO:0008420RNA polymerase II CTD heptapeptide repeat phosphatase activity
GO:0008597calcium-dependent protein serine/threonine phosphatase regulator activity
GO:0017018myosin phosphatase activity
GO:0017020myosin phosphatase regulator activity
GO:0003824catalytic activity
GO:0004722protein serine/threonine phosphatase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005963magnesium-dependent protein serine/threonine phosphatase complex
GO:0017023myosin phosphatase complex
GO:0008287protein serine/threonine phosphatase complex
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL051ncniL051Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00670NO30G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533220mRNA_9247-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533220mRNA_9247Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|533220

>mRNA_9247-protein ID=mRNA_9247-protein|Name=jgi.p|Nanoce1779_2|533220|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MGCIHSGPKTQGARRPKAPKATDKIILDRIEASTATVETTIGSTKLRYAY
VSQRGYYPDALHKANQDCFLVCRNFMRDPDRAVFAVFDGHGREGDLCAQF
CRDLLVEKLGKHLKGKETEKDIRAGLTRGFLELNELLHSCPGIDDTLSGT
TAIVLLLLGDRMFVCNVGDSRAILGQRASAARGGREGGREGGNGSNPSPA
PVLPQLIGGEAAAAAAAAVAGEEEVRVYPLSDDQTPYRRDERERVKKCGA
RVLSMDQLAGFEPLHEKWGASVKLGEAIDEAGDPPRVWSKYGEYPGTAFT
RSLGDSIAEELGVYAVPEITVRKVSAKDKYVMVASDGVFEFLTNAHCIDI
VKGHSDPLAACHAVVREAFNLWLSYEVRTDDITLICLYIDEAGQGGKGGA
LSVGVEEGEEEDPAWAMTTTRPLRSPRG
back to top
Synonyms
Publications