jgi.p|Nanoce1779_2|522575, gene_894 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522575
Unique Namegene_894
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:679551..682157 -

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Properties
Property NameValue
TranscriptId522661
ProteinId522575
Product nameDNA ligase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:679551..682157 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003911DNA ligase (NAD+) activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G03050NO02G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522575mRNA_894-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522575mRNA_894Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|522575

>mRNA_894-protein ID=mRNA_894-protein|Name=jgi.p|Nanoce1779_2|522575|organism=Nannochloropsis oceanica|type=polypeptide|length=765bp
MQAPAEIKQELRDLVRELEAHDDFYYNKDEPQITDAEYDALSQRLEALEG
AHPALVKELHAEEGHVSRAERVGAALPAAVAVGSSAEVGARFAPVTHGWP
MMSLDNAFSAEDVEAWAMRLEKNEKIEEGASAVVSKPLKFVAEAKIDGVS
LSLRYEDGVLVRGATRGNGFVGEDVTANVRAIASIPKRLSCSSLSLSSLP
PVMEIRGEVYLSRQVFEELNRARAAQGAPLLSNPRNAASGSLRQLDTALT
RERRLGFFAYAAETDLSSSSSSSSSSSSFPTRQAALLTQLQSWGFEVAQP
WARCEGTDDLQQFHGRLERERSLLGFDVDGVVYKLDDLSSRAKAGRSARA
PRWALAHKFSPVEAQTRVRSVEVQVGRTGILTPVALLEPVTVGGVVISRA
TLHNFQDVARRDVRVGDIVAVRRAGDVIPQVLGRANITAVGEEGEGGKRP
ERVVPPVVCPSCGGPVRVEVDMVGIYCPAGLSCPAQSLERLAHFTSRDAF
DIKGLGGRRLEELVAWGLLPSGPEEAEDEEEGNEGVWLLEEREGWGTKSV
KALFSAIAARRSVPLGRFIFGLGVPHVGLATAQAIARHFGSVENWWRAMQ
ELEKETEVVVEVEKEKEEEDEDEDEEEKEEKAGGLETIDGIGPTVIGSLR
AFVRDERNQRTVDALLREVQVTREAGSMVVPTEGPLVGKMVLFTGTLGGM
TRSEAEAKAKQLGAKTVKTLSKKVDIVVVGADPGGKVRKARELGVGLLDE
AEWQALVVEARELG*
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Synonyms
Publications