jgi.p|Nanoce1779_2|560017, gene_8908 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560017
Unique Namegene_8908
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_29:161973..164975 -

Link to JBrowse

Properties
Property NameValue
TranscriptId560103
ProteinId560017
Product nameDNA topoisomerase, type IA, core domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:161973..164975 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003916DNA topoisomerase activity
GO:0003677DNA binding
GO:0003917DNA topoisomerase type I activity
Vocabulary: Biological Process
TermDefinition
GO:0006304DNA modification
GO:0006268DNA unwinding involved in DNA replication
GO:0006265DNA topological change
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL046ncniL046Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560017mRNA_8908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560017mRNA_8908Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|560017

>mRNA_8908-protein ID=mRNA_8908-protein|Name=jgi.p|Nanoce1779_2|560017|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MDLRVGRCRTSSCSTNRACAVLLLILFLAHSLCCCSCNPSPPAAFLGPLP
ASSRMWRVLSHHQQLETIAARLIMSTQHRTRLTLMAALASSAASKVKKPT
AAATTTTRKTATKAKPSSAKTKAASSTTKKATTTRASSSKASAAAASGEA
DGMKPGMKLIIVESATKANTIKRFLSSGKGNGKWEVDYCMGHVRELPRTA
ADMPPTAKKEKNKVLGIKVDQGYEPIWIVLPGRESVVSRLKQKAKACSEL
FLATDEDREGEAISWHLLDILKPTVPAHRVIFHEITAKAVMGGLNSPRPL
DTDLVEAQHARRVLDRVAGYTMSPLLWKKIATGLSAGRVQSAGLKLLVDR
ERERMLFHSAAYAGLRAMMLVATGTDFDPRTGTLLESKKEGVLWLGEEGM
EEVAARLAEPRTTWVVREVETKVVTRKRPTPFTTSTLQQDANSRLGFTSS
QTMKLAQELYEEGHISYMRTDSPNMGPEARINPFLPPSLSPFFRQVGSRK
NAASATAQEAHEAIRPSIVTEGGRFRTPKEMTAGWIADKKKLDLYTLIYE
RTLASVMKDAKLERKTVGVEARNEGGKEGGVPLQAELVLTGQTILTHGDA
DNSPSSSLPASSLGLLTPGQTLQCEGMKVLSHSTSPPYRFTQGSFVRMVE
ELGIGRPSTYATIIEVLKTRRYVIVGFNIDQ*
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Synonyms
Publications