jgi.p|Nanoce1779_2|207426, gene_8530 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|207426
Unique Name	gene_8530
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_26:127204..131845 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	207512
ProteinId	207426
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:127204..131845 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL043	ncniL043	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|207426	mRNA_8530-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|207426	mRNA_8530	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|207426

>mRNA_8530-protein ID=mRNA_8530-protein|Name=jgi.p|Nanoce1779_2|207426|organism=Nannochloropsis oceanica|type=polypeptide|length=1214bp
MSAWRTRRLRKPLAPSSKSHSRPRRAGRSVEGRGNNGAGGASRMSLKMAL
MTSKTLGMAGYGPSLIEHAVLCAGLQPLQKIMQPTSISPSPPLSFLSAPD
PENQMEEYHEDDVGRGMGEATAVAVAAATTLAISLEQANRLAESLQGLEG
VVKALDLPGQQGYILCKKEGVIMAESEAEKPGEGQGEGKKETRVLYDEFL
PHILHQHQQEEMVAKELRAFPSFDAAVDEFFVKVEEQKLRQAATAQEEAV
KCKLVRIQRENEARLQELEASEARLLDAARLIEIHSEAVDKALLVLRSAV
ATGADWTTLQEYIKTEQAAGNGLAQMIVGAKWNENKVTMALEDPYHESDD
GCEDEVYGKQVEEGQTQRRKKQLAQKKEKIMHVDIDMALSAYANSRALYE
AKKKATDKASKTVLGMRKALRAAERQAAVTLSKQQTKRSLSSIRKPHWFE
KFNWFITSDNYLVVSGRDAQQNEILVKRYLREGDAYVHADVHGAASCIVR
NKGRKAPAGPSSTGAAENSSGGGGKYAAISPIALHEAGCACVCRSAAWRA
KMVTSAWWVHATQVSKTAPTGEYLTTGSFMIRGKKHFLAPHALEMGLGIL
FKVDEDSLVRHVNERRERVEGQDGELVFEGEEGGEGPAGGEDEEKRRRSQ
ALRHERTKAALVQQPVEETGVAAEQEEDDEEDDEGWAVAEMQAALEPREA
TGQEKEKEEAKGNEGIHEKEEDGTPHTSWLAASRVDDKKGIKRGEGTDAE
AGAGGGGRLSAKERRLVKKGMTLEEIRARERQIQVEPVSSRQQQQAREDE
IGGEKERDEDEEEEVKDARRGLQRLGREDGGIKEEEDGGNNKRGKKGKMK
KIKKKYAEQDDEDRHLALQALGVVKHPAGKGKDKKGAKKGSGSGADPRVR
KDGKDSKEMGSKLAEDLAQMDNAVWKEAWEGLPPWAQRMMEGWVEAKLLR
FLRDLGVMELRALISLPSESQQRAALEAFHTAVMAGVGGAAGRMVRNKSA
VLGREIQKQVVTGGLTSEAPPTAITTCSTKESARAAEVGDEDKPANGEVK
ATFQTSRRAAAKAEEEGMVALLQEEGMLSGGAGEDPMQMEEEQRELRRLT
GKPHPDDMLLFALPVCAPYAALSPANYKYRVKLTPGPQKKGKAAHQALEV
FVRDREATPREVELLKAVPDNDLIASIMGDVKVSKPGIQATLLKAKRIKA
KAARTKSRGLRER*

Synonyms

Publications