jgi.p|Nanoce1779_2|601691, gene_8350 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601691
Unique Namegene_8350
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_24:157..8810 +

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Properties
Property NameValue
TranscriptId601777
ProteinId601691
Product name1, 4-beta cellobiohydrolase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:157..8810 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL039ncniL039Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00130NO23G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601691mRNA_8350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601691mRNA_8350Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|601691

>mRNA_8350-protein ID=mRNA_8350-protein|Name=jgi.p|Nanoce1779_2|601691|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MPRLFHPAAATAAVLASMLLSSFTSVQAAIKTQNMRGMAVTSTGKPRGTN
IFKGADMYVNPYFQEELDSSIATASGEVKKTLKSIRGLSSAYWLDVKSKV
HRADGPGDDFFSMEGILEDAASKNPPPATTFIVYDLPNRDCHAHASNGEI
CCTYLPDGRCDYQAEGDCKEGIQTYKKQYIDPIVQVLKKFQRKVPIALVI
EPDSLPNLATNLGDPRCGSKATVNAYEQGVAYAVEQIGTHAPDVMMYLDS
SHGGWLGWEHSLMDYLAILEKINVAKHVRGFALNTANYQPVGEMCPFWDY
CLGGKNVNATCCADPCKLAQQYNAGNNEMNFALMMHNKTTGMWPSFEPRF
VIDTGRNGQSGMRESCSNWCNIRGAGIGHRPTTDTGSPLVDAFLWLKTPG
ESDGCTQVRE*
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Synonyms
Publications